miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF459639.1/191055-190921 4568:Triticum monococcum
Length = 135
Score = 129 bits (65), Expect = 1e-29
Identities = 102/113 (90%), Gaps = 2/113 (1%)
Strand = Plus / Plus
Query: 17 aattacttgctcttanatttgtctagatacggaggtatctagnacnaaaagtaagtctag 76
||||||||| ||||| |||||||||||||||||| ||||||| || |||| | |||||||
Sbjct: 21 aattacttg-tcttagatttgtctagatacggagatatctagcactaaaa-tgagtctag 78
Query: 77 atacatccgtatctaganaaattcaagacaagtaattcggaacagagggagta 129
||||||||||||||||| |||| |||||||||||||| ||||| |||||||||
Sbjct: 79 atacatccgtatctagacaaatccaagacaagtaatttggaacggagggagta 131
Score = 67.9 bits (34), Expect = 3e-11
Identities = 51/57 (89%)
Strand = Plus / Minus
Query: 73 ctagatacatccgtatctaganaaattcaagacaagtaattcggaacagagggagta 129
||||||| |||||||||||| |||| ||||||||||||||||||| |||||||||
Sbjct: 61 ctagatatctccgtatctagacaaatctaagacaagtaattcggaacggagggagta 5
>RF00906;MIR1122;DQ123819.1/2832-2966 4571:Triticum turgidum
Length = 135
Score = 103 bits (52), Expect = 6e-22
Identities = 111/130 (85%), Gaps = 2/130 (1%)
Strand = Plus / Minus
Query: 1 tactncctccggttnaaattacttgctcttanatttgtctagatacggaggtatctagna 60
|||| |||||| | |||||||||| |||| |||||||||||||| || | ||||| |
Sbjct: 131 tactccctccgttccaaattacttg-tcttcgatttgtctagatacagatatgtctagca 73
Query: 61 cnaaaagtaagtctagatacatccgtatctaganaaattcaagacaagtaattcggaaca 120
| |||| | |||||||||||||||||||||||| ||||| |||||||||||||| ||||
Sbjct: 72 ctaaaa-tgagtctagatacatccgtatctagacaaatttaagacaagtaattcagaacg 14
Query: 121 gagggagtac 130
||||||||||
Sbjct: 13 gagggagtac 4
Score = 56.0 bits (28), Expect = 1e-07
Identities = 93/113 (82%), Gaps = 2/113 (1%)
Strand = Plus / Plus
Query: 17 aattacttgctcttanatttgtctagatacggaggtatctagnacnaaaagtaagtctag 76
||||||||| ||||| ||||||||||||||||| |||||||| || | || ||||
Sbjct: 21 aattacttg-tcttaaatttgtctagatacggatgtatctag-actcattttagtgctag 78
Query: 77 atacatccgtatctaganaaattcaagacaagtaattcggaacagagggagta 129
| | ||| ||||||||| |||| ||||||||||||| ||||| |||||||||
Sbjct: 79 acatatctgtatctagacaaatcgaagacaagtaatttggaacggagggagta 131
>RF00906;MIR1122;AM932686.1/57613-57747 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 58.0 bits (29), Expect = 3e-08
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 74 tagatacatccgtatctaganaaattcaagacaagtaattcggaacagagggagta 129
|||||||||| ||||||||| |||| |||||||| |||| || ||||||||||||
Sbjct: 76 tagatacatctgtatctagacaaatctaagacaagaaatttgggacagagggagta 131
Score = 56.0 bits (28), Expect = 1e-07
Identities = 85/104 (81%), Gaps = 1/104 (0%)
Strand = Plus / Minus
Query: 27 tcttanatttgtctagatacggaggtatctagnacnaaaagtaagtctagatacatccgt 86
||||| |||||||||||||| || ||||||| || |||| | | || |||||||||||
Sbjct: 106 tcttagatttgtctagatacagatgtatctaatacgaaaa-tgtgacttgatacatccgt 48
Query: 87 atctaganaaattcaagacaagtaattcggaacagagggagtac 130
||||||| |||| |||||||| | || || || ||||||||||
Sbjct: 47 atctagacaaatctaagacaagaattttgggaccgagggagtac 4
Score = 44.1 bits (22), Expect = 5e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 27 tcttanatttgtctagatacggaggtatc 55
||||| ||||||||||||||||| |||||
Sbjct: 30 tcttagatttgtctagatacggatgtatc 58
>RF00906;MIR1122;AY465427.2/1983-1848 4567:Triticum turgidum subsp.
durum (durum wheat)
Length = 136
Score = 54.0 bits (27), Expect = 5e-07
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 69 aagtctagatacatccgtatctaganaaattcaagacaagtaattcggaacagagggagt 128
|||| ||||||||||||| | |||| ||||||||| ||| || || ||||| ||||||||
Sbjct: 65 aagtatagatacatccgtgtttagacaaattcaagtcaactattttggaacggagggagt 6
Query: 129 ac 130
||
Sbjct: 5 ac 4
>RF00906;MIR1122;AY146587.2/110938-111052 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 115
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 102 agacaagtaattcggaacagagggagtac 130
|||||||||||||||||| ||||||||||
Sbjct: 32 agacaagtaattcggaacggagggagtac 4
>RF00906;MIR1122;EF540321.1/52965-52831 4571:Triticum turgidum
Length = 135
Score = 50.1 bits (25), Expect = 8e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 73 ctagatacatccgtatctaganaaattcaagacaag 108
|||||||||||||||| |||| ||||| ||||||||
Sbjct: 75 ctagatacatccgtatttagacaaatttaagacaag 110
>RF00906;MIR1122;EF081030.1/6132-5986 4572:Triticum urartu
Length = 147
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 103 gacaagtaattcggaacagagggagtac 130
||||||||||||||||| ||||||||||
Sbjct: 117 gacaagtaattcggaacggagggagtac 144
>RF00906;MIR1122;AY887089.1/1801-1936 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 136
Score = 48.1 bits (24), Expect = 3e-05
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 73 ctagatacatccgtatctaganaaattcaagacaa 107
|||||||||||| |||||||| |||||||| ||||
Sbjct: 61 ctagatacatccatatctagacaaattcaaaacaa 27
>RF00906;MIR1122;AY853252.1/217307-217173 4513:Hordeum vulgare
Length = 135
Score = 48.1 bits (24), Expect = 3e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 74 tagatacatccgtatctaganaaattcaagacaag 108
|||||||||||||||||||| |||| | |||||||
Sbjct: 76 tagatacatccgtatctagataaatcctagacaag 110
>RF00906;MIR1122;EU862588.1/607-710 4516:Hordeum bulbosum
Length = 104
Score = 48.1 bits (24), Expect = 3e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 74 tagatacatccgtatctaganaaattcaagacaag 108
|||||||||||||||||||| |||| ||||||||
Sbjct: 45 tagatacatccgtatctagataaatctaagacaag 79
>RF00906;MIR1122;AY013754.1/1932-2046 37682:Aegilops tauschii
Length = 115
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 103 gacaagtaattcggaacagagggagtac 130
||||||||||||||||| ||||||||||
Sbjct: 85 gacaagtaattcggaacggagggagtac 112
>RF00906;MIR1122;EU862571.1/695-592 98113:Hordeum murinum subsp.
glaucum
Length = 104
Score = 44.1 bits (22), Expect = 5e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 74 tagatacatccgtatctaganaaat 98
|||||||||||||||||||| ||||
Sbjct: 60 tagatacatccgtatctagataaat 36
