miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF459639.1/191055-190921 4568:Triticum monococcum
Length = 135
Score = 149 bits (75), Expect = 1e-35
Identities = 93/99 (93%)
Strand = Plus / Plus
Query: 34 tagatttgtctagatacgaaggtatctagcactaaaatgagtctagatacatccatatct 93
|||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||
Sbjct: 33 tagatttgtctagatacggagatatctagcactaaaatgagtctagatacatccgtatct 92
Query: 94 agacaaatcaaagacaagtaattcagaacggagggagta 132
||||||||| ||||||||||||| ||||||||||||||
Sbjct: 93 agacaaatccaagacaagtaatttggaacggagggagta 131
Score = 75.8 bits (38), Expect = 1e-13
Identities = 85/98 (86%), Gaps = 2/98 (2%)
Strand = Plus / Minus
Query: 36 gatttgtctagatacgaaggtatctagcactaaaatgagt-ctagatacatccatatcta 94
|||||||||||||||| | |||||||| ||| | | ||| ||||||| ||| ||||||
Sbjct: 101 gatttgtctagatacggatgtatctag-actcattttagtgctagatatctccgtatcta 43
Query: 95 gacaaatcaaagacaagtaattcagaacggagggagta 132
|||||||| |||||||||||||| ||||||||||||||
Sbjct: 42 gacaaatctaagacaagtaattcggaacggagggagta 5
>RF00906;MIR1122;DQ123819.1/2832-2966 4571:Triticum turgidum
Length = 135
Score = 133 bits (67), Expect = 7e-31
Identities = 91/99 (91%)
Strand = Plus / Minus
Query: 36 gatttgtctagatacgaaggtatctagcactaaaatgagtctagatacatccatatctag 95
||||||||||||||| | | |||||||||||||||||||||||||||||| |||||||
Sbjct: 101 gatttgtctagatacagatatgtctagcactaaaatgagtctagatacatccgtatctag 42
Query: 96 acaaatcaaagacaagtaattcagaacggagggagtaca 134
|||||| |||||||||||||||||||||||||||||||
Sbjct: 41 acaaatttaagacaagtaattcagaacggagggagtaca 3
Score = 63.9 bits (32), Expect = 5e-10
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 89 tatctagacaaatcaaagacaagtaattcagaacggagggagta 132
|||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 88 tatctagacaaatcgaagacaagtaatttggaacggagggagta 131
>RF00906;MIR1122;AM932686.1/57613-57747 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 67.9 bits (34), Expect = 3e-11
Identities = 67/78 (85%)
Strand = Plus / Minus
Query: 34 tagatttgtctagatacgaaggtatctagcactaaaatgagtctagatacatccatatct 93
||||||||||||||||| | ||||||| || |||||| | || ||||||||| |||||
Sbjct: 103 tagatttgtctagatacagatgtatctaatacgaaaatgtgacttgatacatccgtatct 44
Query: 94 agacaaatcaaagacaag 111
||||||||| ||||||||
Sbjct: 43 agacaaatctaagacaag 26
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 77 tagatacatccatatctagacaaatcaaagacaagtaatt 116
|||||||||| |||||||||||||| |||||||| ||||
Sbjct: 76 tagatacatctgtatctagacaaatctaagacaagaaatt 115
>RF00906;MIR1122;AY821733.1/621-487 4568:Triticum monococcum
Length = 135
Score = 65.9 bits (33), Expect = 1e-10
Identities = 84/101 (83%)
Strand = Plus / Minus
Query: 34 tagatttgtctagatacgaaggtatctagcactaaaatgagtctagatacatccatatct 93
|||||||| ||||||||| | ||||||| ||||||| | | || ||||||||| ||| |
Sbjct: 103 tagatttgcctagatacggatgtatctaatactaaaacgtgacttgatacatccgtattt 44
Query: 94 agacaaatcaaagacaagtaattcagaacggagggagtaca 134
||||||||| |||||||| | || | ||||||||||||||
Sbjct: 43 agacaaatctaagacaagaattttgggacggagggagtaca 3
Score = 48.1 bits (24), Expect = 3e-05
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 77 tagatacatccatatctagacaaatcaaagacaagtaattcagaacggagggagta 132
||||||||||| ||||||| |||||| |||||||| | || ||||||||| ||||
Sbjct: 76 tagatacatccgtatctaggcaaatctaagacaagaattttggaacggaggaagta 131
>RF00906;MIR1122;FJ374610.1/683-817 4568:Triticum monococcum
Length = 135
Score = 63.9 bits (32), Expect = 5e-10
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 77 tagatacatccatatctagacaaatcaaagacaagtaattcagaacggagggagta 132
|||||||||||||||||||||||||| |||||||| | || | ||||||||||||
Sbjct: 76 tagatacatccatatctagacaaatctaagacaagaattttgggacggagggagta 131
Score = 44.1 bits (22), Expect = 5e-04
Identities = 64/78 (82%)
Strand = Plus / Minus
Query: 34 tagatttgtctagatacgaaggtatctagcactaaaatgagtctagatacatccatatct 93
|||||||||||||||| | | ||||||| ||||||| | | | ||||||||| ||| |
Sbjct: 103 tagatttgtctagatatggatgtatctaatactaaaacgtgagttgatacatccctattt 44
Query: 94 agacaaatcaaagacaag 111
||| ||||| ||||||||
Sbjct: 43 agaaaaatctaagacaag 26
>RF00906;MIR1122;AY485644.1/84291-84425 4568:Triticum monococcum
Length = 135
Score = 61.9 bits (31), Expect = 2e-09
Identities = 82/99 (82%)
Strand = Plus / Minus
Query: 37 atttgtctagatacgaaggtatctagcactaaaatgagtctagatacatccatatctaga 96
|||||| |||||||| | ||||||| |||||||||| ||| |||||||||||| ||||
Sbjct: 100 atttgtttagatacggatgtatctaacactaaaatgtaactacatacatccatatttaga 41
Query: 97 caaatcaaagacaagtaattcagaacggagggagtacaa 135
||||| ||||||| | || | |||||||||||||||
Sbjct: 40 caaatttaagacaacaattttgggacggagggagtacaa 2
>RF00906;MIR1122;AY853252.1/217307-217173 4513:Hordeum vulgare
Length = 135
Score = 60.0 bits (30), Expect = 8e-09
Identities = 57/66 (86%)
Strand = Plus / Minus
Query: 36 gatttgtctagatacgaaggtatctagcactaaaatgagtctagatacatccatatctag 95
||||| |||||||||| | ||||||| |||||||| | | |||||||||||||||| |||
Sbjct: 101 gatttatctagatacggatgtatctaacactaaaacgtgactagatacatccatatttag 42
Query: 96 acaaat 101
| ||||
Sbjct: 41 agaaat 36
>RF00906;MIR1122;DQ890018.1/183-48 77009:Hordeum vulgare subsp.
spontaneum
Length = 136
Score = 58.0 bits (29), Expect = 3e-08
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 76 ctagatacatccatatctagacaaatcaaagacaagtaattcagaacggagggagta 132
|||||||||| |||||||| ||||||| |||||||| | || ||||||||||||||
Sbjct: 61 ctagatacattcatatctaaacaaatctaagacaagaattttggaacggagggagta 5
Score = 48.1 bits (24), Expect = 3e-05
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 77 tagatacatccatatctagacaaatcaaagacaagtaattcagaacggagggagta 132
|||||||||| || |||||||||| | |||||||| | || || ||||||||||||
Sbjct: 77 tagatacatcaatttctagacaaagctaagacaagaattttaggacggagggagta 132
>RF00906;MIR1122;AY146587.2/110938-111052 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 115
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 106 gacaagtaattcagaacggagggagta 132
|||||||||||||||||||||||||||
Sbjct: 85 gacaagtaattcagaacggagggagta 111
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 105 agacaagtaattcagaacggagggagtac 133
||||||||||||| |||||||||||||||
Sbjct: 32 agacaagtaattcggaacggagggagtac 4
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 55 gtatctagcactaaaatgagtctagatacatccat 89
|||||||| |||||||| ||||||||||||||||
Sbjct: 44 gtatctagaactaaaatatgtctagatacatccat 78
>RF00906;MIR1122;AP009567.1/9225-9090 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 136
Score = 54.0 bits (27), Expect = 5e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 77 tagatacatccatatctagacaaatcaaagacaag 111
||||||||| |||||||||||||||| ||||||||
Sbjct: 60 tagatacattcatatctagacaaatctaagacaag 26
>RF00906;MIR1122;AF277239.1/1056-1190 37679:Heteranthelium piliferum
Length = 135
Score = 54.0 bits (27), Expect = 5e-07
Identities = 81/99 (81%)
Strand = Plus / Minus
Query: 34 tagatttgtctagatacgaaggtatctagcactaaaatgagtctagatacatccatatct 93
||||||||| |||||| ||| || |||| |||||||| | |||||||||||| ||| |
Sbjct: 103 tagatttgtttagatatgaatgtgtctaacactaaaacatgactagatacatccgtattt 44
Query: 94 agacaaatcaaagacaagtaattcagaacggagggagta 132
||||||||| | |||||| | || | ||||||||||||
Sbjct: 43 agacaaatctatgacaagaattttgggacggagggagta 5
>RF00906;MIR1122;DJ023121.1/176-54 4513:Hordeum vulgare
Length = 123
Score = 52.0 bits (26), Expect = 2e-06
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 87 catatctagacaaatcaaagacaagtaattcagaacggagggagta 132
|||||||||||||||| |||||||| | || || ||||||||||||
Sbjct: 50 catatctagacaaatctaagacaagaattttaggacggagggagta 5
>RF00906;MIR1122;AY887089.1/1801-1936 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 136
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 76 ctagatacatccatatctagacaaat 101
||||||||||||||||||||||||||
Sbjct: 61 ctagatacatccatatctagacaaat 36
>RF00906;MIR1122;EF081030.1/6132-5986 4572:Triticum urartu
Length = 147
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 106 gacaagtaattcagaacggagggagtaca 134
|||||||||||| ||||||||||||||||
Sbjct: 117 gacaagtaattcggaacggagggagtaca 145
>RF00906;MIR1122;EF540321.1/52965-52831 4571:Triticum turgidum
Length = 135
Score = 50.1 bits (25), Expect = 8e-06
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 55 gtatctagcactaaaatgagtctagatacatccatatctagacaaatcaaagacaag 111
||||||| |||||||||| |||||||||||| ||| ||||||||| ||||||||
Sbjct: 54 gtatctaacactaaaatgtaactagatacatccgtatttagacaaatttaagacaag 110
>RF00906;MIR1122;EU399684.1/4485-4371 4550:Secale cereale (rye)
Length = 115
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 105 agacaagtaattcagaacggagggagtac 133
||||||||||||| |||||||||||||||
Sbjct: 84 agacaagtaattccgaacggagggagtac 112
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 105 agacaagtaattcagaacggagggagta 132
||||||||||||| ||||||||||||||
Sbjct: 32 agacaagtaattccgaacggagggagta 5
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 56 tatctagcactaaaatgagtctagatacatccat 89
||||||| |||||||| ||||||||||||||||
Sbjct: 45 tatctagaactaaaatacgtctagatacatccat 78
>RF00906;MIR1122;EU096089.1/14944-15085 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 142
Score = 50.1 bits (25), Expect = 8e-06
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 80 atacatccatatctagacaaatcaaagacaagtaattcagaacggagggagta 132
|||||| |||||||||||||||| |||||||| | || | ||||||||||||
Sbjct: 57 atacattcatatctagacaaatctaagacaagaagtttgggacggagggagta 5
>RF00906;MIR1122;AJ704455.1/466-601 4513:Hordeum vulgare
Length = 136
Score = 50.1 bits (25), Expect = 8e-06
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 76 ctagatacatccatatctagacaaatcaaagacaagtaattcagaacggagggagta 132
|||||||||| ||||||||||||||| |||||||| | || | ||||||||||||
Sbjct: 61 ctagatacattcatatctagacaaatgtaagacaagaattttgggacggagggagta 5
>RF00906;MIR1122;AF459085.1/1867-1743 4513:Hordeum vulgare
Length = 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 55 gtatctagcactaaaatgagtctagatacatccatatcta 94
|||||||| |||||||| |||||||||||||||| ||||
Sbjct: 54 gtatctagaactaaaatacgtctagatacatccatttcta 93
>RF00906;MIR1122;DQ890004.1/48-183 4513:Hordeum vulgare
Length = 136
Score = 48.1 bits (24), Expect = 3e-05
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 77 tagatacatccatatctagacaaatcaaagacaagtaattcagaacggagggagta 132
|||||||||| || |||||||||| | |||||||| | || || ||||||||||||
Sbjct: 60 tagatacatcaatttctagacaaagctaagacaagaattttaggacggagggagta 5
>RF00906;MIR1122;CT009625.1/8885-8999 37682:Aegilops tauschii
Length = 115
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 106 gacaagtaattcagaacggagggagtac 133
|||||||||||| |||||||||||||||
Sbjct: 31 gacaagtaattccgaacggagggagtac 4
>RF00906;MIR1122;AY013754.1/1932-2046 37682:Aegilops tauschii
Length = 115
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 106 gacaagtaattcagaacggagggagtac 133
|||||||||||| |||||||||||||||
Sbjct: 85 gacaagtaattcggaacggagggagtac 112
>RF00906;MIR1122;EU117148.1/1866-1980 4571:Triticum turgidum
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 110 agtaattcagaacggagggagta 132
|||||||||||||||||||||||
Sbjct: 27 agtaattcagaacggagggagta 5
>RF00906;MIR1122;AM932686.1/4713-4599 4565:Triticum aestivum
(bread wheat)
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 55 gtatctagcactaaaatgagtctagatacatccat 89
|||||||| |||||||| ||||||||||||||||
Sbjct: 44 gtatctagaactaaaatacgtctagatacatccat 78
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 106 gacaagtaattcagaacggagggagta 132
|||||||||||| ||||||||||||||
Sbjct: 85 gacaagtaattccgaacggagggagta 111
>RF00906;MIR1122;EU862588.1/607-710 4516:Hordeum bulbosum
Length = 104
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 77 tagatacatccatatctagacaaatcaaagacaag 111
||||||||||| |||||||| ||||| ||||||||
Sbjct: 45 tagatacatccgtatctagataaatctaagacaag 79
>RF00906;MIR1122;AF548379.1/5968-6092 37682:Aegilops tauschii
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 55 gtatctagcactaaaatgagtctagatacatccat 89
|||||||| |||||||| ||||||||||||||||
Sbjct: 72 gtatctagaactaaaatacgtctagatacatccat 38
>RF00906;MIR1122;AF427791.1/222786-222921 4513:Hordeum vulgare
Length = 136
Score = 44.1 bits (22), Expect = 5e-04
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 76 ctagatacatccatatctagacaaatcaaagacaagtaattcagaacggagggagtac 133
|||||||||| |||||||| ||||||| ||||||| | || | |||||||||||||
Sbjct: 61 ctagatacattcatatctaaacaaatctaagacaataattttgggacggagggagtac 4
