miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY853252.1/217307-217173 4513:Hordeum vulgare
Length = 135
Score = 60.0 bits (30), Expect = 3e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 22 cacgttttagtgttagatacatctgtatctagat 55
||||||||||||||||||||||| ||||||||||
Sbjct: 63 cacgttttagtgttagatacatccgtatctagat 96
>RF00906;MIR1122;EU862588.1/607-710 4516:Hordeum bulbosum
Length = 104
Score = 50.1 bits (25), Expect = 3e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 27 tttagtgttagatacatctgtatctagat 55
|||||||||||||||||| ||||||||||
Sbjct: 37 tttagtgttagatacatccgtatctagat 65
>RF00906;MIR1122;AY821733.1/621-487 4568:Triticum monococcum
Length = 135
Score = 48.1 bits (24), Expect = 1e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 22 cacgttttagtgttagatacatctgtatctag 53
||||||||||| ||||||||||| ||||||||
Sbjct: 63 cacgttttagtattagatacatccgtatctag 94
>RF00906;MIR1122;EF540321.1/52965-52831 4571:Triticum turgidum
Length = 135
Score = 46.1 bits (23), Expect = 4e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 26 ttttagtgttagatacatctgtatcta 52
|||||||||||||||||||| ||||||
Sbjct: 69 ttttagtgttagatacatctttatcta 43
>RF00906;MIR1122;AY485644.1/84291-84425 4568:Triticum monococcum
Length = 135
Score = 46.1 bits (23), Expect = 4e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 26 ttttagtgttagatacatctgtatcta 52
||||||||||||||||||| |||||||
Sbjct: 67 ttttagtgttagatacatccgtatcta 93
>RF00906;MIR1122;AM932686.1/57613-57747 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 44.1 bits (22), Expect = 2e-04
Identities = 50/57 (87%), Gaps = 3/57 (5%)
Strand = Plus / Plus
Query: 1 tgtctagatacg-atgtat--agacacgttttagtgttagatacatctgtatctaga 54
|||||||||||| |||||| || ||| |||| || |||||||||||||||||||||
Sbjct: 39 tgtctagatacggatgtatcaagtcacattttcgtattagatacatctgtatctaga 95
>RF00906;MIR1122;EU660901.1/93085-92951 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 42.1 bits (21), Expect = 6e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 22 cacgttttagtgttagatacatctgtatctaga 54
|||||||| || ||||||||||| |||||||||
Sbjct: 63 cacgtttttgtattagatacatccgtatctaga 95
>RF00906;MIR1122;FJ374610.1/683-817 4568:Triticum monococcum
Length = 135
Score = 42.1 bits (21), Expect = 6e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 22 cacgttttagtgttagatacatctgtatctaga 54
||||||||||| ||||||||||| ||||||||
Sbjct: 63 cacgttttagtattagatacatccatatctaga 95
>RF00906;MIR1122;EU862571.1/695-592 98113:Hordeum murinum subsp.
glaucum
Length = 104
Score = 42.1 bits (21), Expect = 6e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 27 tttagtgttagatacatctgtatctagat 55
||||| |||||||||||| ||||||||||
Sbjct: 68 tttagcgttagatacatccgtatctagat 40
