miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF459639.1/191055-190921 4568:Triticum monococcum
Length = 135
Score = 204 bits (103), Expect = 3e-52
Identities = 115/119 (96%)
Strand = Plus / Plus
Query: 24 ccgttccgaattacttgtcttagatttgtctagatacggaggtatctagcactaaaatga 83
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 13 ccgttccgaattacttgtcttagatttgtctagatacggagatatctagcactaaaatga 72
Query: 84 gtctagatacatcagtatctagacaaattcaagacaagtaattcggaacggagggagta 142
||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 73 gtctagatacatccgtatctagacaaatccaagacaagtaatttggaacggagggagta 131
Score = 111 bits (56), Expect = 3e-24
Identities = 106/120 (88%), Gaps = 2/120 (1%)
Strand = Plus / Minus
Query: 24 ccgttccgaattacttgtcttagatttgtctagatacggaggtatctagcactaaaatga 83
||||||| ||||||||||||| |||||||||||||||||| |||||||| ||| | | |
Sbjct: 123 ccgttccaaattacttgtcttggatttgtctagatacggatgtatctag-actcatttta 65
Query: 84 gt-ctagatacatcagtatctagacaaattcaagacaagtaattcggaacggagggagta 142
|| ||||||| || |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 64 gtgctagatatctccgtatctagacaaatctaagacaagtaattcggaacggagggagta 5
>RF00906;MIR1122;DQ123819.1/2832-2966 4571:Triticum turgidum
Length = 135
Score = 170 bits (86), Expect = 4e-42
Identities = 113/122 (92%)
Strand = Plus / Minus
Query: 24 ccgttccgaattacttgtcttagatttgtctagatacggaggtatctagcactaaaatga 83
||||||| ||||||||||||| ||||||||||||||| || | ||||||||||||||||
Sbjct: 123 ccgttccaaattacttgtcttcgatttgtctagatacagatatgtctagcactaaaatga 64
Query: 84 gtctagatacatcagtatctagacaaattcaagacaagtaattcggaacggagggagtac 143
||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 63 gtctagatacatccgtatctagacaaatttaagacaagtaattcagaacggagggagtac 4
Query: 144 at 145
||
Sbjct: 3 at 2
Score = 105 bits (53), Expect = 2e-22
Identities = 112/129 (86%), Gaps = 2/129 (1%)
Strand = Plus / Plus
Query: 15 gtacttcccccgttccgaattacttgtcttagatttgtctagatacggaggtatctagca 74
||||| || |||||| ||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct: 4 gtactccctccgttctgaattacttgtcttaaatttgtctagatacggatgtatctag-a 62
Query: 75 ctaaaatgagt-ctagatacatcagtatctagacaaattcaagacaagtaattcggaacg 133
|| | | ||| ||||| | ||| |||||||||||||| ||||||||||||| ||||||
Sbjct: 63 ctcattttagtgctagacatatctgtatctagacaaatcgaagacaagtaatttggaacg 122
Query: 134 gagggagta 142
|||||||||
Sbjct: 123 gagggagta 131
>RF00906;MIR1122;AY821733.1/621-487 4568:Triticum monococcum
Length = 135
Score = 101 bits (51), Expect = 3e-21
Identities = 111/131 (84%)
Strand = Plus / Minus
Query: 16 tacttcccccgttccgaattacttgtcttagatttgtctagatacggaggtatctagcac 75
||||||| ||||||| || | ||||||||||||||| ||||||||||| ||||||| ||
Sbjct: 131 tacttcctccgttccaaaattcttgtcttagatttgcctagatacggatgtatctaatac 72
Query: 76 taaaatgagtctagatacatcagtatctagacaaattcaagacaagtaattcggaacgga 135
||||| | | || |||||||| |||| ||||||||| |||||||| | || || |||||
Sbjct: 71 taaaacgtgacttgatacatccgtatttagacaaatctaagacaagaattttgggacgga 12
Query: 136 gggagtacatg 146
|||||||||||
Sbjct: 11 gggagtacatg 1
Score = 50.1 bits (25), Expect = 9e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 37 cttgtcttagatttgtctagatacggaggtatc 69
||||||||||||||||||| ||||||| |||||
Sbjct: 26 cttgtcttagatttgtctaaatacggatgtatc 58
>RF00906;MIR1122;AM932686.1/57613-57747 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 87.7 bits (44), Expect = 4e-17
Identities = 95/112 (84%)
Strand = Plus / Minus
Query: 32 aattacttgtcttagatttgtctagatacggaggtatctagcactaaaatgagtctagat 91
|||| |||||||||||||||||||||||| || ||||||| || |||||| | || |||
Sbjct: 115 aatttcttgtcttagatttgtctagatacagatgtatctaatacgaaaatgtgacttgat 56
Query: 92 acatcagtatctagacaaattcaagacaagtaattcggaacggagggagtac 143
||||| |||||||||||||| |||||||| | || || || ||||||||||
Sbjct: 55 acatccgtatctagacaaatctaagacaagaattttgggaccgagggagtac 4
Score = 58.0 bits (29), Expect = 4e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 37 cttgtcttagatttgtctagatacggaggtatc 69
||||||||||||||||||||||||||| |||||
Sbjct: 26 cttgtcttagatttgtctagatacggatgtatc 58
Score = 56.0 bits (28), Expect = 1e-07
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 87 tagatacatcagtatctagacaaattcaagacaagtaattcggaacggagggagta 142
|||||||||| |||||||||||||| |||||||| |||| || || |||||||||
Sbjct: 76 tagatacatctgtatctagacaaatctaagacaagaaatttgggacagagggagta 131
>RF00906;MIR1122;EF540321.1/52965-52831 4571:Triticum turgidum
Length = 135
Score = 79.8 bits (40), Expect = 1e-14
Identities = 91/108 (84%)
Strand = Plus / Plus
Query: 37 cttgtcttagatttgtctagatacggaggtatctagcactaaaatgagtctagatacatc 96
||||||||| |||||| |||||| || ||||||| |||||||||| |||||||||||
Sbjct: 26 cttgtcttacatttgtttagataaagatgtatctaacactaaaatgtaactagatacatc 85
Query: 97 agtatctagacaaattcaagacaagtaattcggaacggagggagtaca 144
|||| |||||||||| |||||||| | || || |||||||| |||||
Sbjct: 86 cgtatttagacaaatttaagacaagaattttgggacggagggggtaca 133
>RF00906;MIR1122;AY485644.1/84291-84425 4568:Triticum monococcum
Length = 135
Score = 79.8 bits (40), Expect = 1e-14
Identities = 91/108 (84%)
Strand = Plus / Minus
Query: 37 cttgtcttagatttgtctagatacggaggtatctagcactaaaatgagtctagatacatc 96
||||||||| |||||| |||||||||| ||||||| |||||||||| ||| |||||||
Sbjct: 110 cttgtcttacatttgtttagatacggatgtatctaacactaaaatgtaactacatacatc 51
Query: 97 agtatctagacaaattcaagacaagtaattcggaacggagggagtaca 144
||| |||||||||| ||||||| | || || ||||||||||||||
Sbjct: 50 catatttagacaaatttaagacaacaattttgggacggagggagtaca 3
>RF00906;MIR1122;AY465427.2/1983-1848 4567:Triticum turgidum subsp.
durum (durum wheat)
Length = 136
Score = 65.9 bits (33), Expect = 2e-10
Identities = 86/101 (85%), Gaps = 2/101 (1%)
Strand = Plus / Minus
Query: 47 atttgtctagatacggaggtatctag-cactaaaatgagtctagatacatcagtatctag 105
|||| |||||| ||||| |||||||| ||||||| ||| |||||||||| || | |||
Sbjct: 100 atttatctagacacggatgtatctagacactaaaca-agtatagatacatccgtgtttag 42
Query: 106 acaaattcaagacaagtaattcggaacggagggagtacatg 146
||||||||||| ||| || || |||||||||||||||||||
Sbjct: 41 acaaattcaagtcaactattttggaacggagggagtacatg 1
>RF00906;MIR1122;EU862588.1/607-710 4516:Hordeum bulbosum
Length = 104
Score = 61.9 bits (31), Expect = 2e-09
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 37 cttgtcttagatttgtctagatacggaggtatctagcactaaa 79
|||||||||||||| |||||||||||| ||||||| |||||||
Sbjct: 79 cttgtcttagatttatctagatacggatgtatctaacactaaa 37
>RF00906;MIR1122;AY853252.1/217307-217173 4513:Hordeum vulgare
Length = 135
Score = 60.0 bits (30), Expect = 9e-09
Identities = 69/82 (84%)
Strand = Plus / Minus
Query: 37 cttgtcttagatttgtctagatacggaggtatctagcactaaaatgagtctagatacatc 96
||||||| ||||| |||||||||||| ||||||| |||||||| | | |||||||||||
Sbjct: 110 cttgtctaggatttatctagatacggatgtatctaacactaaaacgtgactagatacatc 51
Query: 97 agtatctagacaaattcaagac 118
||| |||| ||||| |||||
Sbjct: 50 catatttagagaaatttaagac 29
>RF00906;MIR1122;AY146587.2/110938-111052 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 115
Score = 58.0 bits (29), Expect = 4e-08
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 115 agacaagtaattcggaacggagggagtac 143
|||||||||||||||||||||||||||||
Sbjct: 32 agacaagtaattcggaacggagggagtac 4
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 116 gacaagtaattcggaacggagggagta 142
|||||||||||| ||||||||||||||
Sbjct: 85 gacaagtaattcagaacggagggagta 111
>RF00906;MIR1122;EF081030.1/6132-5986 4572:Triticum urartu
Length = 147
Score = 58.0 bits (29), Expect = 4e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 116 gacaagtaattcggaacggagggagtaca 144
|||||||||||||||||||||||||||||
Sbjct: 117 gacaagtaattcggaacggagggagtaca 145
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 116 gacaagtaattcggaacggagggagta 142
|||||||||||||||||| ||||||||
Sbjct: 31 gacaagtaattcggaacgaagggagta 5
>RF00906;MIR1122;FJ374610.1/683-817 4568:Triticum monococcum
Length = 135
Score = 56.0 bits (28), Expect = 1e-07
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 37 cttgtcttagatttgtctagatacggaggtatctagcactaaaa 80
||||||||||||||||||||||| ||| ||||||| |||||||
Sbjct: 110 cttgtcttagatttgtctagatatggatgtatctaatactaaaa 67
Score = 48.1 bits (24), Expect = 4e-05
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 87 tagatacatcagtatctagacaaattcaagacaagtaattcggaacggagggagta 142
|||||||||| ||||||||||||| |||||||| | || || ||||||||||||
Sbjct: 76 tagatacatccatatctagacaaatctaagacaagaattttgggacggagggagta 131
>RF00906;MIR1122;AY013754.1/1932-2046 37682:Aegilops tauschii
Length = 115
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 116 gacaagtaattcggaacggagggagtac 143
||||||||||||||||||||||||||||
Sbjct: 85 gacaagtaattcggaacggagggagtac 112
>RF00906;MIR1122;AF277239.1/1056-1190 37679:Heteranthelium piliferum
Length = 135
Score = 54.0 bits (27), Expect = 6e-07
Identities = 84/103 (81%)
Strand = Plus / Minus
Query: 40 gtcttagatttgtctagatacggaggtatctagcactaaaatgagtctagatacatcagt 99
||||||||||||| |||||| | | || |||| |||||||| | ||||||||||| ||
Sbjct: 107 gtcttagatttgtttagatatgaatgtgtctaacactaaaacatgactagatacatccgt 48
Query: 100 atctagacaaattcaagacaagtaattcggaacggagggagta 142
|| ||||||||| | |||||| | || || ||||||||||||
Sbjct: 47 atttagacaaatctatgacaagaattttgggacggagggagta 5
Score = 48.1 bits (24), Expect = 4e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 37 cttgtcttagatttgtctagatacggaggtatctag 72
|||||| |||||||||||| ||||||| ||||||||
Sbjct: 26 cttgtcatagatttgtctaaatacggatgtatctag 61
>RF00906;MIR1122;EU399684.1/4485-4371 4550:Secale cereale (rye)
Length = 115
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 115 agacaagtaattcggaacggagggagtac 143
||||||||||||| |||||||||||||||
Sbjct: 84 agacaagtaattccgaacggagggagtac 112
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 115 agacaagtaattcggaacggagggagta 142
||||||||||||| ||||||||||||||
Sbjct: 32 agacaagtaattccgaacggagggagta 5
>RF00906;MIR1122;EU660895.1/53244-53110 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 37 cttgtcttagatttgtctagatacggaggtat 68
||||||||||||||||||| ||||||| ||||
Sbjct: 110 cttgtcttagatttgtctaaatacggatgtat 79
Score = 44.1 bits (22), Expect = 6e-04
Identities = 85/106 (80%)
Strand = Plus / Plus
Query: 37 cttgtcttagatttgtctagatacggaggtatctagcactaaaatgagtctagatacatc 96
||||||||| |||||||||||||| | |||| || |||||||| | || |||||||
Sbjct: 26 cttgtcttacatttgtctagatacatatgtatttaatactaaaatatgacttcatacatc 85
Query: 97 agtatctagacaaattcaagacaagtaattcggaacggagggagta 142
|||| ||||||||| |||||||| | || || | ||||||||||
Sbjct: 86 cgtatttagacaaatctaagacaagaattttgggatggagggagta 131
>RF00906;MIR1122;X73528.1/281-181 4565:Triticum aestivum (bread
wheat)
Length = 101
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 37 cttgtcttagatttgtctagatac 60
||||||||||||||||||||||||
Sbjct: 76 cttgtcttagatttgtctagatac 53
>RF00906;MIR1122;EU660901.1/93085-92951 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 48.1 bits (24), Expect = 4e-05
Identities = 78/96 (81%)
Strand = Plus / Minus
Query: 48 tttgtctagatacggaggtatctagcactaaaatgagtctagatacatcagtatctagac 107
|||||||||||||||| ||||||| || |||| | | || ||||||| || | |||||
Sbjct: 99 tttgtctagatacggatgtatctaatacaaaaacgtgacttgatacattcgtctttagac 40
Query: 108 aaattcaagacaagtaattcggaacggagggagtac 143
||||| |||||||| | ||| | |||||| ||||||
Sbjct: 39 aaatttaagacaagaatttcaggacggagcgagtac 4
>RF00906;MIR1122;DQ537335.1/79725-79622 4565:Triticum aestivum
(bread wheat)
Length = 104
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 114 aagacaagtaattcggaacggagggagtacat 145
|||||||||| || ||||||||||||||||||
Sbjct: 72 aagacaagtatttaggaacggagggagtacat 103
>RF00906;MIR1122;CT009625.1/8885-8999 37682:Aegilops tauschii
Length = 115
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 116 gacaagtaattcggaacggagggagtac 143
|||||||||||| |||||||||||||||
Sbjct: 31 gacaagtaattccgaacggagggagtac 4
>RF00906;MIR1122;BT009295.1/1923-1809 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 116 gacaagtaattcggaacggaggg 138
|||||||||||||||||||||||
Sbjct: 85 gacaagtaattcggaacggaggg 107
>RF00906;MIR1122;FJ394375.1/382-487 4568:Triticum monococcum
Length = 106
Score = 46.1 bits (23), Expect = 1e-04
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 84 gtctagatacatcagtatctagacaaattcaagacaagtaattcggaacggagggagta 142
||||||||||| | |||||||||||||| ||| ||| ||| |||| | ||||||||||
Sbjct: 44 gtctagatacacctgtatctagacaaatataaggcaactaaatcgggatggagggagta 102
>RF00906;MIR1122;EU626553.1/30213-30109 4572:Triticum urartu
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 37 cttgtcttagatttgtctagatacgga 63
|||||||||||||| ||||||||||||
Sbjct: 25 cttgtcttagatttatctagatacgga 51
>RF00906;MIR1122;AM932686.1/4713-4599 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 116 gacaagtaattcggaacggagggagta 142
|||||||||||| ||||||||||||||
Sbjct: 85 gacaagtaattccgaacggagggagta 111
>RF00906;MIR1122;AP009567.1/9225-9090 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 136
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 37 cttgtcttagatttgtctagata 59
|||||||||||||||||||||||
Sbjct: 26 cttgtcttagatttgtctagata 48
>RF00906;MIR1122;DJ023121.1/176-54 4513:Hordeum vulgare
Length = 123
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 37 cttgtcttagatttgtctagata 59
|||||||||||||||||||||||
Sbjct: 26 cttgtcttagatttgtctagata 48
>RF00906;MIR1122;AY887089.1/1801-1936 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 136
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 86 ctagatacatcagtatctagacaaattcaagacaa 120
||||||||||| ||||||||||||||||| ||||
Sbjct: 61 ctagatacatccatatctagacaaattcaaaacaa 27
>RF00906;MIR1122;EU096089.1/14944-15085 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 142
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 37 cttgtcttagatttgtctagata 59
|||||||||||||||||||||||
Sbjct: 26 cttgtcttagatttgtctagata 48
>RF00906;MIR1122;EU862571.1/695-592 98113:Hordeum murinum subsp.
glaucum
Length = 104
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 37 cttgtcttagatttgtctagatacggaggtatcta 71
||||||| |||||| |||||||||||| |||||||
Sbjct: 26 cttgtctaagatttatctagatacggatgtatcta 60
>RF00906;MIR1122;AM932682.1/94335-94221 4565:Triticum aestivum
(bread wheat)
Length = 115
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 116 gacaagtaattcggaacggagggagtacat 145
|||||||||||| ||||||||||| |||||
Sbjct: 31 gacaagtaattccgaacggagggaatacat 2
