miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;BT009606.1/1324-1200 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 149 bits (75), Expect = 1e-35
Identities = 106/115 (92%), Gaps = 1/115 (0%)
Strand = Plus / Plus
Query: 12 tccctccgttcggaattacttgtcacaaaaatg-ataaaaatggatgtatctacaactaa 70
|||||||||||| ||||||| |||||||||||| |||||||||||||||||||||| |||
Sbjct: 8 tccctccgttcgaaattactcgtcacaaaaatggataaaaatggatgtatctacaattaa 67
Query: 71 aatgcatttagatacatttatttcttggacgagtaattccgaacggaaggagtag 125
||| ||| |||||||||| |||||||||||||||||||| ||||||| |||||||
Sbjct: 68 aatacatctagatacattcatttcttggacgagtaattctgaacggagggagtag 122
>RF00906;MIR1122;CT009625.1/8885-8999 37682:Aegilops tauschii
Length = 115
Score = 113 bits (57), Expect = 6e-25
Identities = 101/117 (86%), Gaps = 9/117 (7%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtcacaaaaatgataaaaatggatgtatctacaact 68
|||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 5 tactccctccgttcggaattacttgtca---------taaaaatggatgtatctataact 55
Query: 69 aaaatgcatttagatacatttatttcttggacgagtaattccgaacggaaggagtag 125
||||| ||| |||||||||| ||||||||||||||||||| ||||| || |||||||
Sbjct: 56 aaaatacatctagatacattcatttcttggacgagtaatttcgaacagagggagtag 112
>RF00906;MIR1122;AF474373.1/52258-52134 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 97.6 bits (49), Expect = 4e-20
Identities = 74/81 (91%), Gaps = 1/81 (1%)
Strand = Plus / Minus
Query: 8 atactccctccgttcggaattacttgtcacaaaaat-gataaaaatggatgtatctacaa 66
||||||||||||| ||||||||||||||||| |||| ||||||||||||| |||||| ||
Sbjct: 122 atactccctccgtccggaattacttgtcacacaaatggataaaaatggatatatctagaa 63
Query: 67 ctaaaatgcatttagatacat 87
||||||| ||| |||||||||
Sbjct: 62 ctaaaatacatctagatacat 42
>RF00906;MIR1122;AF325196.1/33744-33620 4565:Triticum aestivum
(bread wheat)
Length = 125
Score = 89.7 bits (45), Expect = 9e-18
Identities = 100/117 (85%), Gaps = 1/117 (0%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtcacaaaaatg-ataaaaatggatgtatctacaac 67
||||||||| || |||||||||||||| || ||||| ||||||||||||||||||| ||
Sbjct: 5 tactccctctgtccggaattacttgtcgcataaatggataaaaatggatgtatctagaat 64
Query: 68 taaaatgcatttagatacatttatttcttggacgagtaattccgaacggaaggagta 124
|||||| ||| |||||| ||| |||||| ||| |||| ||||| ||||| ||||||
Sbjct: 65 taaaatacatctagatagattcatttctccgacaagtatttccggacggagggagta 121
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 6 atatactccctccgttcggaattacttgtc 35
||||||||||||||| ||||| ||||||||
Sbjct: 124 atatactccctccgtccggaaatacttgtc 95
>RF00906;MIR1122;L41869.1/3010-3134 4513:Hordeum vulgare
Length = 125
Score = 89.7 bits (45), Expect = 9e-18
Identities = 100/117 (85%), Gaps = 1/117 (0%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtcacaaaaatga-taaaaatggatgtatctacaac 67
|||||||||| | |||||||||||||| ||||||||| || ||||||||||||||| |||
Sbjct: 121 tactccctccatgcggaattacttgtcgcaaaaatgaatagaaatggatgtatctataac 62
Query: 68 taaaatgcatttagatacatttatttcttggacgagtaattccgaacggaaggagta 124
|||||| ||| ||||||||| ||| |||||| |||| ||||| ||| | ||||||
Sbjct: 61 taaaatacatctagatacatccattctttggacaagtatttccggacgaagggagta 5
>RF00906;MIR1122;AF022725.1/11631-11507 4513:Hordeum vulgare
Length = 125
Score = 89.7 bits (45), Expect = 9e-18
Identities = 73/81 (90%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 8 atactccctccgttcggaattacttgtcacaaaaatg-ataaaaatggatgtatctacaa 66
||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||| ||
Sbjct: 4 atactccctccgtccggaattacttgtcacataaatgtataaaaatggatgtatctagaa 63
Query: 67 ctaaaatgcatttagatacat 87
|| ||| ||| |||||||||
Sbjct: 64 ttataatacatctagatacat 84
>RF00906;MIR1122;EF540321.1/236564-236678 4571:Triticum turgidum
Length = 115
Score = 81.8 bits (41), Expect = 2e-15
Identities = 62/69 (89%)
Strand = Plus / Minus
Query: 49 aaatggatgtatctacaactaaaatgcatttagatacatttatttcttggacgagtaatt 108
||||||||||||||| ||||||||| ||| ||||||||| |||| ||||||||||||||
Sbjct: 80 aaatggatgtatctataactaaaatacatctagatacatccatttattggacgagtaatt 21
Query: 109 ccgaacgga 117
| |||||||
Sbjct: 20 cggaacgga 12
>RF00906;MIR1122;AY491681.1/88752-88866 4568:Triticum monococcum
Length = 115
Score = 77.8 bits (39), Expect = 3e-14
Identities = 66/75 (88%)
Strand = Plus / Plus
Query: 51 atggatgtatctacaactaaaatgcatttagatacatttatttcttggacgagtaattcc 110
||||||||||||| ||||||||| ||| |||||||||| |||||| ||| |||||||||
Sbjct: 38 atggatgtatctagaactaaaatacatctagatacattcatttctgcgacaagtaattcc 97
Query: 111 gaacggaaggagtag 125
|||||| |||||||
Sbjct: 98 aaacggatggagtag 112
>RF00906;MIR1122;EU282650.1/1397-1273 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 125
Score = 77.8 bits (39), Expect = 3e-14
Identities = 70/79 (88%), Gaps = 1/79 (1%)
Strand = Plus / Minus
Query: 10 actccctccgttcggaattacttgtcacaaaaat-gataaaaatggatgtatctacaact 68
|||||||| || | |||||||||||| || |||| |||||||||||||||||||| ||||
Sbjct: 120 actccctctgtccagaattacttgtcgcataaattgataaaaatggatgtatctagaact 61
Query: 69 aaaatgcatttagatacat 87
||||| ||| |||||||||
Sbjct: 60 aaaatacatctagatacat 42
>RF00906;MIR1122;EU117148.1/1866-1980 4571:Triticum turgidum
Length = 115
Score = 75.8 bits (38), Expect = 1e-13
Identities = 68/78 (87%)
Strand = Plus / Minus
Query: 49 aaatggatgtatctacaactaaaatgcatttagatacatttatttcttggacgagtaatt 108
|||||||| |||||| ||||||||| ||| ||||||||| |||||| |||||||||||
Sbjct: 80 aaatggatatatctaaaactaaaatacatctagatacatccatttctgcgacgagtaatt 21
Query: 109 ccgaacggaaggagtagt 126
| ||||||| ||||||||
Sbjct: 20 cagaacggagggagtagt 3
>RF00906;MIR1122;AF548379.1/5968-6092 37682:Aegilops tauschii
Length = 125
Score = 75.8 bits (38), Expect = 1e-13
Identities = 99/118 (83%), Gaps = 1/118 (0%)
Strand = Plus / Minus
Query: 8 atactccctccgttcggaattacttgtcacaaaaatg-ataaaaatggatgtatctacaa 66
||||||||||||| ||||| ||||||| || ||||| ||||||||||||||||||| ||
Sbjct: 122 atactccctccgtccggaactacttgttgcagaaatggataaaaatggatgtatctagaa 63
Query: 67 ctaaaatgcatttagatacatttatttcttggacgagtaattccgaacggaaggagta 124
||||||| | | ||||||||| |||||| ||| | ||||| || ||||| ||||||
Sbjct: 62 ctaaaatacgtctagatacatccatttctccgacaaataatttcggacggagggagta 5
>RF00906;MIR1122;DJ023136.1/240-116 4513:Hordeum vulgare
Length = 125
Score = 69.9 bits (35), Expect = 8e-12
Identities = 66/75 (88%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 14 cctccgttcggaattacttgtcacaaaaatg-ataaaaatggatgtatctacaactaaaa 72
||||||| ||||||||||| || |||||||| ||| ||||| |||||| || ||||||||
Sbjct: 10 cctccgtccggaattacttatcgcaaaaatggatagaaatgaatgtatttagaactaaaa 69
Query: 73 tgcatttagatacat 87
||||| |||||||||
Sbjct: 70 tgcatctagatacat 84
>RF00906;MIR1122;AY951945.1/93583-93458 4568:Triticum monococcum
Length = 126
Score = 67.9 bits (34), Expect = 3e-11
Identities = 59/66 (89%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtcacaaaaatg-ataaaaatggatgtatctacaac 67
|||||||||||| ||||| |||||||| || ||||| ||| ||||||||||||||| |||
Sbjct: 5 tactccctccgtccggaaatacttgtcgcagaaatggatataaatggatgtatctagaac 64
Query: 68 taaaat 73
||||||
Sbjct: 65 taaaat 70
>RF00906;MIR1122;AM932683.1/23310-23434 4565:Triticum aestivum
(bread wheat)
Length = 125
Score = 67.9 bits (34), Expect = 3e-11
Identities = 59/66 (89%), Gaps = 1/66 (1%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtcacaaaaatg-ataaaaatggatgtatctacaac 67
|||||||||||||| ||| |||||||| |||||||| ||| ||||||||| ||||| |||
Sbjct: 121 tactccctccgttcagaaatacttgtcgcaaaaatgaatataaatggatgcatctaaaac 62
Query: 68 taaaat 73
||||||
Sbjct: 61 taaaat 56
>RF00906;MIR1122;AY643843.1/31186-31309 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 67.9 bits (34), Expect = 3e-11
Identities = 97/118 (82%)
Strand = Plus / Plus
Query: 8 atactccctccgttcggaattacttgtcacaaaaatgataaaaatggatgtatctacaac 67
||||||||||||| | ||| |||||||| | |||||| | ||| |||||||||| |||
Sbjct: 4 atactccctccgtccagaaatacttgtcctagaaatgaatataatagatgtatctataac 63
Query: 68 taaaatgcatttagatacatttatttcttggacgagtaattccgaacggaaggagtag 125
|||||| | |||||||||| |||| | |||| |||| ||||||||||| |||||||
Sbjct: 64 taaaataagtctagatacattcatttttaggacaagtatttccgaacggagggagtag 121
Score = 50.1 bits (25), Expect = 7e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtcacaaaaatga 45
|||||||||||||||||| |||||||| ||||||||
Sbjct: 120 tactccctccgttcggaaatacttgtcctaaaaatga 84
>RF00906;MIR1122;AF459085.1/1867-1743 4513:Hordeum vulgare
Length = 125
Score = 67.9 bits (34), Expect = 3e-11
Identities = 98/118 (83%), Gaps = 1/118 (0%)
Strand = Plus / Plus
Query: 8 atactccctccgttcggaattacttgtcacaaaaatgataa-aaatggatgtatctacaa 66
||||||||||||| ||||| |||||||| |||||| || ||||||||||||||| ||
Sbjct: 4 atactccctccgtccggaagtacttgtcgtcaaaatggaaagaaatggatgtatctagaa 63
Query: 67 ctaaaatgcatttagatacatttatttcttggacgagtaattccgaacggaaggagta 124
||||||| | | ||||||||| |||||| ||| | |||||||| ||||| ||||||
Sbjct: 64 ctaaaatacgtctagatacatccatttctatgacaaataattccggacggagggagta 121
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 7 tatactccctccgttcggaattacttgtca 36
|||||||||||||| |||||||| ||||||
Sbjct: 123 tatactccctccgtccggaattatttgtca 94
>RF00906;MIR1122;AY235466.1/780-656 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 65.9 bits (33), Expect = 1e-10
Identities = 70/81 (86%), Gaps = 1/81 (1%)
Strand = Plus / Minus
Query: 8 atactccctccgttcggaattacttgtcacaaaaatg-ataaaaatggatgtatctacaa 66
||||||||||||| | || |||||||| | ||||| ||||||||||||||||||| ||
Sbjct: 122 atactccctccgtcccaaaatacttgtcgtagaaatgcataaaaatggatgtatctagaa 63
Query: 67 ctaaaatgcatttagatacat 87
||||||| ||| |||||||||
Sbjct: 62 ctaaaatacatctagatacat 42
>RF00906;MIR1122;AY235464.1/714-838 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 65.9 bits (33), Expect = 1e-10
Identities = 70/81 (86%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 8 atactccctccgttcggaattacttgtcacaaaaatg-ataaaaatggatgtatctacaa 66
||||||||||||| | || |||||||| | ||||| ||||||||||||||||||| ||
Sbjct: 4 atactccctccgtcccaaaatacttgtcgtagaaatgcataaaaatggatgtatctagaa 63
Query: 67 ctaaaatgcatttagatacat 87
||||||| ||| |||||||||
Sbjct: 64 ctaaaatacatctagatacat 84
>RF00906;MIR1122;EU399684.1/4485-4371 4550:Secale cereale (rye)
Length = 115
Score = 65.9 bits (33), Expect = 1e-10
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 48 aaaatggatgtatctacaactaaaatgcatttagatacatttatttcttggacgagtaat 107
||||||||| |||||| ||||||||| | | ||||||||| |||||| ||| ||||||
Sbjct: 35 aaaatggatctatctagaactaaaatacgtctagatacatccatttctgagacaagtaat 94
Query: 108 tccgaacggaaggagta 124
|||||||||| ||||||
Sbjct: 95 tccgaacggagggagta 111
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtcacaaaaatg 44
||||||||||||||||||||||||||| || |||||
Sbjct: 111 tactccctccgttcggaattacttgtctcagaaatg 76
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 102 agtaattccgaacggaaggagtagtt 127
|||||||||||||||| |||||||||
Sbjct: 27 agtaattccgaacggagggagtagtt 2
>RF00906;MIR1122;EU096089.1/6299-6422 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 124
Score = 65.9 bits (33), Expect = 1e-10
Identities = 96/117 (82%)
Strand = Plus / Plus
Query: 8 atactccctccgttcggaattacttgtcacaaaaatgataaaaatggatgtatctacaac 67
||||||||||||| ||||| |||||||| ||||||| | | |||||||||||| |||
Sbjct: 4 atactccctccgtccggaaatacttgtcctaaaaatggatatattggatgtatctataac 63
Query: 68 taaaatgcatttagatacatttatttcttggacgagtaattccgaacggaaggagta 124
|||||| | |||||||||| || ||| |||| |||| ||||| ||||| ||||||
Sbjct: 64 taaaataagtctagatacattcatctctaggacaagtatttccggacggagggagta 120
>RF00906;MIR1122;DQ445241.1/4641-4518 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 124
Score = 65.9 bits (33), Expect = 1e-10
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtcacaaaaatgataaaaatggatgtatctacaact 68
|||||||||||| ||||| ||||||||| ||||||| |||||||||||||||| || |
Sbjct: 120 tactccctccgtccggaaatacttgtcataaaaatgtataaaatggatgtatctataagt 61
Query: 69 aaaat 73
|||||
Sbjct: 60 aaaat 56
>RF00906;MIR1122;DQ445236.1/8526-8403 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 65.9 bits (33), Expect = 1e-10
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtcacaaaaatgataaaaatggatgtatctacaact 68
|||||||||||| ||||| |||||||| || |||||| | |||||||||||||| ||||
Sbjct: 5 tactccctccgtccggaaatacttgtcccagaaatgaatataatggatgtatctataact 64
Query: 69 aaaat 73
|||||
Sbjct: 65 aaaat 69
>RF00906;MIR1122;FJ225151.1/115-1 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 63.9 bits (32), Expect = 5e-10
Identities = 69/80 (86%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 10 actccctccgttcggaattacttgtcacaaaaatg-ataaaaatggatgtatctacaact 68
||||||||||||||||| |||||||| | ||||| ||||||| ||||||||| ||||
Sbjct: 1 actccctccgttcggaaatacttgtcggagaaatgcctaaaaataaatgtatctagaact 60
Query: 69 aaaatgcatttagatacatt 88
||||| ||| ||||||||||
Sbjct: 61 aaaatacatctagatacatt 80
>RF00906;MIR1122;AY368673.1/196592-196716 4571:Triticum turgidum
Length = 125
Score = 63.9 bits (32), Expect = 5e-10
Identities = 60/68 (88%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 7 tatactccctccgttcggaattacttgtcacaaaaatg-ataaaaatggatgtatctaca 65
|||||||||||||| | ||| |||||||| | ||||| ||||||||||||||||||| |
Sbjct: 3 tatactccctccgtcctgaaatacttgtcggagaaatgcataaaaatggatgtatctaga 62
Query: 66 actaaaat 73
||||||||
Sbjct: 63 actaaaat 70
>RF00906;MIR1122;EU812563.1/59152-59276 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 63.9 bits (32), Expect = 5e-10
Identities = 69/80 (86%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtcacaaaaat-gataaaaatggatgtatctacaac 67
|||||| ||||| |||||||||||||| || |||| ||||||||| ||||||||| |||
Sbjct: 5 tactccgtccgtccggaattacttgtcgcacaaatatataaaaatgaatgtatctagaac 64
Query: 68 taaaatgcatttagatacat 87
|||||| || |||||||||
Sbjct: 65 taaaatatatctagatacat 84
>RF00906;MIR1122;AM932686.1/4713-4599 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 6 atatactccctccgttcggaattacttgtcacaaaaatg 44
|||||||||||||||||||||||||||||| | ||||||
Sbjct: 114 atatactccctccgttcggaattacttgtcgcgaaaatg 76
Score = 50.1 bits (25), Expect = 7e-06
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 48 aaaatggatgtatctacaactaaaatgcatttagatacatttatttcttggacgagtaat 107
||||| |||||||||| ||||||||| | | ||||||||| |||| ||| ||||||
Sbjct: 35 aaaatagatgtatctagaactaaaatacgtctagatacatccattttcgcgacaagtaat 94
Query: 108 tccgaacggaaggagta 124
|||||||||| ||||||
Sbjct: 95 tccgaacggagggagta 111
>RF00906;MIR1122;AY146587.2/110938-111052 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 115
Score = 60.0 bits (30), Expect = 8e-09
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 47 aaaaatggatgtatctacaactaaaatgcatttagatacatttatttcttggacgagtaa 106
||||||||||||||||| ||||||||| | ||||||||| |||| || ||| |||||
Sbjct: 34 aaaaatggatgtatctagaactaaaatatgtctagatacatccattttttcgacaagtaa 93
Query: 107 ttccgaacggaaggagta 124
||| ||||||| ||||||
Sbjct: 94 ttcagaacggagggagta 111
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtcacaaaaatg 44
|||||||||||||| |||||||||||| ||||||||
Sbjct: 5 tactccctccgttccgaattacttgtctcaaaaatg 40
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtcacaaaaatg 44
|||||||||||||| |||||||||||| |||||||
Sbjct: 111 tactccctccgttctgaattacttgtcgaaaaaatg 76
>RF00906;MIR1122;EU282737.1/1022-902 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 121
Score = 60.0 bits (30), Expect = 8e-09
Identities = 58/66 (87%), Gaps = 1/66 (1%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtcacaaaaat-gataaaaatggatgtatctacaac 67
|||||||||||| |||||||||||||||| ||||| || | ||||| |||||| || |||
Sbjct: 121 tactccctccgtccggaattacttgtcaccaaaatggaaataaatgaatgtatttagaac 62
Query: 68 taaaat 73
||||||
Sbjct: 61 taaaat 56
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtcacaaaaatg 44
|||||||||||| |||||||||||| || |||||||
Sbjct: 5 tactccctccgtccggaattacttgacataaaaatg 40
>RF00906;MIR1122;AB238931.1/2749-2883 4568:Triticum monococcum
Length = 135
Score = 56.0 bits (28), Expect = 1e-07
Identities = 68/80 (85%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtca-caaaaatgataaaaatggatgtatctacaac 67
|||||||||||| || || ||||||||| ||||| || ||||| |||||||| || |||
Sbjct: 5 tactccctccgtccgaaaatacttgtcatcaaaatggacaaaaagggatgtatttagaac 64
Query: 68 taaaatgcatttagatacat 87
|||||| ||| |||||||||
Sbjct: 65 taaaatacatctagatacat 84
Score = 48.1 bits (24), Expect = 3e-05
Identities = 49/56 (87%), Gaps = 1/56 (1%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtcacaaaaatg-ataaaaatggatgtatcta 63
|||||||||||| ||||| ||||||||| |||||| |||||| |||||||||||
Sbjct: 131 tactccctccgtccggaaatacttgtcatcaaaatgaataaaaggggatgtatcta 76
>RF00906;MIR1122;DQ145552.1/668-803 4573:Aegilops speltoides
Length = 136
Score = 56.0 bits (28), Expect = 1e-07
Identities = 68/80 (85%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtca-caaaaatgataaaaatggatgtatctacaac 67
||||||||||||||| || ||||||||| ||||| ||||| || ||||||||| |||
Sbjct: 5 tactccctccgttcgaaaatacttgtcatcaaaatggataataagaaatgtatctagaac 64
Query: 68 taaaatgcatttagatacat 87
|||||| ||| |||||||||
Sbjct: 65 taaaatacatctagatacat 84
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtcacaaaaatg 44
|||||||||||| ||||| |||||||||| ||||||
Sbjct: 132 tactccctccgtccggaaatacttgtcaccaaaatg 97
>RF00906;MIR1122;AB298184.1/15044-14931 4565:Triticum aestivum
(bread wheat)
Length = 114
Score = 54.0 bits (27), Expect = 5e-07
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 49 aaatggatgtatctacaactaaaatgcatttagatacat 87
||||||||||||||| ||||||||| ||| |||||||||
Sbjct: 79 aaatggatgtatctagaactaaaatacatctagatacat 41
>RF00906;MIR1122;AY013754.1/1932-2046 37682:Aegilops tauschii
Length = 115
Score = 54.0 bits (27), Expect = 5e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 49 aaatggatgtatctacaactaaaatgcatttagatacat 87
||||||||||||||| ||||||||| ||| |||||||||
Sbjct: 36 aaatggatgtatctagaactaaaatacatctagatacat 74
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtc 35
|||||||||||||| ||||||||||||
Sbjct: 111 tactccctccgttccgaattacttgtc 85
>RF00906;MIR1122;CT009586.1/21808-21942 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 52.0 bits (26), Expect = 2e-06
Identities = 60/70 (85%), Gaps = 1/70 (1%)
Strand = Plus / Minus
Query: 5 aatatactccctccgttcggaattacttgtca-caaaaatgataaaaatggatgtatcta 63
|||||||||||||||| || || ||||||||| ||||| ||||||||| |||||| ||
Sbjct: 135 aatatactccctccgtccgaaaatacttgtcatcaaaatggataaaaataaatgtattta 76
Query: 64 caactaaaat 73
|||||||||
Sbjct: 75 gaactaaaat 66
>RF00906;MIR1122;BT009083.1/864-988 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 50.1 bits (25), Expect = 7e-06
Identities = 72/85 (84%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 13 ccctccgttcggaattacttgtcacaaaaat-gataaaaatggatgtatctacaact-aa 70
|||||| | |||||||||||||| | |||| | |||||||| ||||||||| |||| ||
Sbjct: 8 ccctccatccggaattacttgtcgtagaaatgggtaaaaatgaatgtatctagaactaaa 67
Query: 71 aatgcatttagatacatttatttct 95
||| | ||||||||||| |||||||
Sbjct: 68 aatacgtttagatacatctatttct 92
>RF00906;MIR1122;AB298185.1/18759-18893 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 50.1 bits (25), Expect = 7e-06
Identities = 68/81 (83%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 8 atactccctccgttcggaattacttgtca-caaaaatgataaaaatggatgtatctacaa 66
||||||||||||| ||||| || |||||| || || |||||||| | |||||||| ||
Sbjct: 4 atactccctccgtccggaaatatttgtcatcagaatggataaaaagtggtgtatctagaa 63
Query: 67 ctaaaatgcatttagatacat 87
||||||| ||| |||||||||
Sbjct: 64 ctaaaatacatctagatacat 84
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 7 tatactccctccgttcggaattacttgtca 36
|||||||||||||| ||||| |||||||||
Sbjct: 133 tatactccctccgtccggaaatacttgtca 104
>RF00906;MIR1122;EU835980.1/752-629 4565:Triticum aestivum (bread
wheat)
Length = 124
Score = 50.1 bits (25), Expect = 7e-06
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtcacaaaaatgataaaaatggatgtatctacaact 68
|||||||||||| || || |||||||| | |||||| ||||| |||||||||| ||||
Sbjct: 5 tactccctccgtccgcaaatacttgtcctagaaatgaataaaattgatgtatctataact 64
Query: 69 aaaat 73
|||||
Sbjct: 65 aaaat 69
>RF00906;MIR1122;AY963808.1/10854-10720 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 50.1 bits (25), Expect = 7e-06
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 8 atactccctccgttcggaattacttgtca-caaaaatgataaaaatggatgtatcta 63
||||||||||||| ||||| ||||||||| ||||| ||||||| |||||||||||
Sbjct: 4 atactccctccgtccggaaatacttgtcatcaaaatggataaaaggggatgtatcta 60
Score = 46.1 bits (23), Expect = 1e-04
Identities = 57/67 (85%), Gaps = 1/67 (1%)
Strand = Plus / Minus
Query: 8 atactccctccgttcggaattacttgtcacaaaaatga-taaaaatggatgtatctacaa 66
||||||||||||| || || ||||||||| ||| ||| |||||| |||||||||| ||
Sbjct: 132 atactccctccgtccgaaaatacttgtcatcaaagtgactaaaaagagatgtatctagaa 73
Query: 67 ctaaaat 73
|||||||
Sbjct: 72 ctaaaat 66
>RF00906;MIR1122;AY853252.1/156228-156351 4513:Hordeum vulgare
Length = 124
Score = 50.1 bits (25), Expect = 7e-06
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtcacaaaaatgataaaaatggatgtatctacaact 68
|||||||||||| ||||| |||||| | |||||| | | |||||||||||||| ||||
Sbjct: 120 tactccctccgtccggaaatacttgacctaaaaataaatataatggatgtatctataact 61
Query: 69 aaaat 73
|||||
Sbjct: 60 aaaat 56
>RF00906;MIR1122;AM932682.1/94335-94221 4565:Triticum aestivum
(bread wheat)
Length = 115
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 12 tccctccgttcggaattacttgtc 35
||||||||||||||||||||||||
Sbjct: 8 tccctccgttcggaattacttgtc 31
>RF00906;MIR1122;BT009295.1/1923-1809 4565:Triticum aestivum
(bread wheat)
Length = 115
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 48 aaaatggatgtatctacaactaaaatgcatttagatacat 87
|||||||||||||||| ||||||||| ||| | |||||||
Sbjct: 35 aaaatggatgtatctagaactaaaatacatcttgatacat 74
>RF00906;MIR1122;EF028786.1/1091-968 4565:Triticum aestivum (bread
wheat)
Length = 124
Score = 48.1 bits (24), Expect = 3e-05
Identities = 93/116 (80%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtcacaaaaatgataaaaatggatgtatctacaact 68
||||||||| || ||||||||||||| | ||| ||| |||||| |||||| || ||||
Sbjct: 120 tactccctctgtccggaattacttgtgccgaaatggattaaaatgaatgtatttagaact 61
Query: 69 aaaatgcatttagatacatttatttcttggacgagtaattccgaacggaaggagta 124
||||| | | ||||||||| |||||| ||| |||| || || ||||| ||||||
Sbjct: 60 aaaatacgtctagatacatcaatttctcagacaagtattttcggacggagggagta 5
>RF00906;MIR1122;EU159422.1/10160-10283 37682:Aegilops tauschii
Length = 124
Score = 48.1 bits (24), Expect = 3e-05
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 44 gataaaaatggatgtatctacaactaaaatgcatttagatacat 87
|||||||||||||||||||| || |||||| | | |||||||||
Sbjct: 85 gataaaaatggatgtatctagaagtaaaatacgtctagatacat 42
>RF00906;MIR1122;EF081030.1/6132-5986 4572:Triticum urartu
Length = 147
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtc 35
|||||||||||||| ||||||||||||
Sbjct: 143 tactccctccgttccgaattacttgtc 117
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtcaca 38
|||||||| ||||| |||||||||||||||
Sbjct: 5 tactcccttcgttccgaattacttgtcaca 34
>RF00906;MIR1122;AF459639.1/191055-190921 4568:Triticum monococcum
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtc 35
|||||||||||||| ||||||||||||
Sbjct: 5 tactccctccgttccgaattacttgtc 31
>RF00906;MIR1122;DQ123819.1/2832-2966 4571:Triticum turgidum
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtc 35
|||||||||||||| ||||||||||||
Sbjct: 5 tactccctccgttctgaattacttgtc 31
>RF00906;MIR1122;AF474373.1/14703-14580 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 50 aatggatgtatctacaactaaaatgcatttagatacatt 88
|||||||||||| | ||||||||| |||||||||||||
Sbjct: 46 aatggatgtatccataactaaaataaatttagatacatt 84
>RF00906;MIR1122;EU282564.1/350-463 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 114
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 49 aaatggatgtatctacaactaaaatgcatttagatacat 87
||||||||||||||| |||| |||| ||| |||||||||
Sbjct: 80 aaatggatgtatctagaactgaaatacatctagatacat 42
>RF00906;MIR1122;DQ889708.1/343-221 4565:Triticum aestivum (bread
wheat)
Length = 123
Score = 44.1 bits (22), Expect = 5e-04
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 48 aaaatggatgtatctacaactaaaatgcatttagatacatttatttcttggacgagtaat 107
|||||| ||||||||| |||||||| | | ||||||||| |||||| ||| ||||||
Sbjct: 89 aaaatgaatgtatctagaactaaaactcgtctagatacatccatttctgcgacaagtaat 30
Query: 108 tccgaa 113
||||||
Sbjct: 29 tccgaa 24
>RF00906;MIR1122;AB095006.1/1949-2072 4565:Triticum aestivum
(bread wheat)
Length = 124
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 44 gataaaaatggatgtatctacaactaaaat 73
||||||||||||||||| || |||||||||
Sbjct: 41 gataaaaatggatgtatgtagaactaaaat 70
