miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY491681.1/88752-88866 4568:Triticum monococcum
Length = 115
Score = 107 bits (54), Expect = 3e-23
Identities = 85/94 (90%), Gaps = 1/94 (1%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtctcggatatggatgtatctagaactaaaatatgt 68
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 5 tactccctccattcggaattacttgtctcggatatggatgtatctagaactaaaatacat 64
Query: 69 ttaagatacatccaattctacgacaaggaattcc 102
| |||||||| || |||| ||||||| ||||||
Sbjct: 65 ct-agatacattcatttctgcgacaagtaattcc 97
Score = 50.1 bits (25), Expect = 7e-06
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 8 ctactccctccgttcggaattacttgtctcggatatggatgtatctaga 56
||||||| |||||| ||||||||||||| | || ||| |||||||||||
Sbjct: 112 ctactccatccgtttggaattacttgtcgcagaaatgaatgtatctaga 64
>RF00906;MIR1122;EU399684.1/4485-4371 4550:Secale cereale (rye)
Length = 115
Score = 103 bits (52), Expect = 5e-22
Identities = 95/107 (88%), Gaps = 2/107 (1%)
Strand = Plus / Plus
Query: 8 ctactccctccgttcggaattacttgtctcggatatggatgtatctagaactaaaatatg 67
||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||| |
Sbjct: 4 ctactccctccgttcggaattacttgtctcgaaaatggatctatctagaactaaaatacg 63
Query: 68 tttaagatacatccaattctacgacaaggaattcccgaacggnggga 114
| | ||||||||||| |||| |||||| |||| |||||||| ||||
Sbjct: 64 tct-agatacatccatttctgagacaagtaatt-ccgaacggaggga 108
Score = 79.8 bits (40), Expect = 8e-15
Identities = 46/48 (95%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtctcggatatggatgtatctaga 56
||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 111 tactccctccgttcggaattacttgtctcagaaatggatgtatctaga 64
>RF00906;MIR1122;AY146587.2/110938-111052 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 115
Score = 97.6 bits (49), Expect = 3e-20
Identities = 83/93 (89%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtctcggatatggatgtatctagaactaaaatatgt 68
|||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 5 tactccctccgttccgaattacttgtctcaaaaatggatgtatctagaactaaaatatgt 64
Query: 69 ttaagatacatccaattctacgacaaggaattc 101
| ||||||||||| || | ||||||| |||||
Sbjct: 65 ct-agatacatccattttttcgacaagtaattc 96
Score = 48.1 bits (24), Expect = 3e-05
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtctcggatatggatgtatctaga 56
|||||||||||||| |||||||||||| | |||||||||||||||
Sbjct: 111 tactccctccgttctgaattacttgtcgaaaaaatggatgtatctaga 64
>RF00906;MIR1122;AM932682.1/94335-94221 4565:Triticum aestivum
(bread wheat)
Length = 115
Score = 81.8 bits (41), Expect = 2e-15
Identities = 87/100 (87%), Gaps = 2/100 (2%)
Strand = Plus / Minus
Query: 16 tccgttcggaattacttgtctcggatatggatgtatctagaactaaaatatgtttaagat 75
||||||| |||||||||||| | | |||||||||||||||||| ||| |||| | ||||
Sbjct: 104 tccgttccgaattacttgtcgcataaatggatgtatctagaactgaaaaatgtct-agat 46
Query: 76 acatccaattctacgacaaggaattcccgaacggngggaa 115
||||||| |||||||||||| |||| |||||||| |||||
Sbjct: 45 acatccatttctacgacaagtaatt-ccgaacggagggaa 7
Score = 58.0 bits (29), Expect = 3e-08
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 12 tccctccgttcggaattacttgtctcggatatggatgtatctaga 56
|||||||||||||||||||||||| || |||||||||||||||
Sbjct: 8 tccctccgttcggaattacttgtcgtagaaatggatgtatctaga 52
>RF00906;MIR1122;AM932686.1/4713-4599 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 71.9 bits (36), Expect = 2e-12
Identities = 91/107 (85%), Gaps = 2/107 (1%)
Strand = Plus / Plus
Query: 8 ctactccctccgttcggaattacttgtctcggatatggatgtatctagaactaaaatatg 67
||||| || ||||||||||||| |||||||| | || ||||||||||||||||||||| |
Sbjct: 4 ctacttccaccgttcggaattatttgtctcgaaaatagatgtatctagaactaaaatacg 63
Query: 68 tttaagatacatccaattctacgacaaggaattcccgaacggnggga 114
| | ||||||||||| || ||||||| |||| |||||||| ||||
Sbjct: 64 tct-agatacatccattttcgcgacaagtaatt-ccgaacggaggga 108
Score = 71.9 bits (36), Expect = 2e-12
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtctcggatatggatgtatctaga 56
||||||||||||||||||||||||||| || | |||||||||||||||
Sbjct: 111 tactccctccgttcggaattacttgtcgcgaaaatggatgtatctaga 64
>RF00906;MIR1122;DQ889708.1/343-221 4565:Triticum aestivum (bread
wheat)
Length = 123
Score = 67.9 bits (34), Expect = 3e-11
Identities = 80/94 (85%), Gaps = 1/94 (1%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtctcggatatggatgtatctagaactaaaatatgt 68
||||||||| ||||||||||||||| ||| | ||| |||||||||||||||||| ||
Sbjct: 119 tactccctctattcggaattacttgtttcgaaaatgaatgtatctagaactaaaactcgt 60
Query: 69 ttaagatacatccaattctacgacaaggaattcc 102
| ||||||||||| |||| ||||||| ||||||
Sbjct: 59 ct-agatacatccatttctgcgacaagtaattcc 27
Score = 50.1 bits (25), Expect = 7e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 20 ttcggaattacttgtctcggatatggatgtatctaga 56
|||||||||||||||| | || |||||||||||||||
Sbjct: 24 ttcggaattacttgtcgcagaaatggatgtatctaga 60
>RF00906;MIR1122;AB298184.1/15044-14931 4565:Triticum aestivum
(bread wheat)
Length = 114
Score = 67.9 bits (34), Expect = 3e-11
Identities = 52/58 (89%)
Strand = Plus / Minus
Query: 8 ctactccctccgttcggaattacttgtctcggatatggatgtatctagaactaaaata 65
||||||||||||||| ||||||| ||| | || ||||||||||||||||||||||||
Sbjct: 111 ctactccctccgttccaaattactcgtcgctgaaatggatgtatctagaactaaaata 54
Score = 48.1 bits (24), Expect = 3e-05
Identities = 40/44 (90%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 13 ccctccgttcggaattacttgtctcggatatggatgtatctaga 56
|||||||||| || ||||||||||| |||||||||||||||||
Sbjct: 9 ccctccgttccga-ttacttgtctcacatatggatgtatctaga 51
>RF00906;MIR1122;CT009625.1/8885-8999 37682:Aegilops tauschii
Length = 115
Score = 65.9 bits (33), Expect = 1e-10
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtctcggatatggatgtatctagaactaaaata 65
||||||||||||||||||||||||||| | ||||||||||||| ||||||||||
Sbjct: 5 tactccctccgttcggaattacttgtcataaaaatggatgtatctataactaaaata 61
>RF00906;MIR1122;DQ245819.1/394-508 4577:Zea mays
Length = 115
Score = 63.9 bits (32), Expect = 5e-10
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 14 cctccgttcggaattacttgtctcggatatggatgtatctagaactaaaata 65
|||||||| |||||||| ||||||||| ||||| |||| |||||||||||||
Sbjct: 10 cctccgtttggaattacctgtctcggaaatggacgtatttagaactaaaata 61
>RF00906;MIR1122;EF081030.1/6132-5986 4572:Triticum urartu
Length = 147
Score = 58.0 bits (29), Expect = 3e-08
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtctcggatatggatgtatct 53
|||||||||||||| |||||||||||| | | |||||||||||||
Sbjct: 143 tactccctccgttccgaattacttgtcgcaggtatggatgtatct 99
>RF00906;MIR1122;EF540321.1/236564-236678 4571:Triticum turgidum
Length = 115
Score = 58.0 bits (29), Expect = 3e-08
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtctcggatatggatgtatctagaactaaaata 65
|||||||||||||| ||||||| ||| | || ||||||||||||| ||||||||||
Sbjct: 111 tactccctccgttccaaattactcgtcgcagaaatggatgtatctataactaaaata 55
>RF00906;MIR1122;EU117148.1/1866-1980 4571:Triticum turgidum
Length = 115
Score = 58.0 bits (29), Expect = 3e-08
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 8 ctactccctccgttcggaattacttgtctcggatatggatgtatctaga 56
||||||||||||||| |||||||| ||| | || |||||||||||||||
Sbjct: 4 ctactccctccgttctgaattactcgtcgcagaaatggatgtatctaga 52
Score = 54.0 bits (27), Expect = 4e-07
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 11 ctccctccgttcggaattacttgtctcggatatggatgtatctagaactaaaata 65
|||||||||||| ||||||| ||||| || |||||| |||||| ||||||||||
Sbjct: 109 ctccctccgttccaaattactcgtctcagaaatggatatatctaaaactaaaata 55
>RF00906;MIR1122;AF459085.1/1867-1743 4513:Hordeum vulgare
Length = 125
Score = 58.0 bits (29), Expect = 3e-08
Identities = 48/53 (90%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 42 atggatgtatctagaactaaaatatgtttaagatacatccaattctacgacaa 94
|||||||||||||||||||||||| || | ||||||||||| ||||| |||||
Sbjct: 48 atggatgtatctagaactaaaatacgtct-agatacatccatttctatgacaa 99
Score = 48.1 bits (24), Expect = 3e-05
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtctcggatatggatgtatctaga 56
|||||||||||| |||||||| ||||| || |||||||||||||||
Sbjct: 121 tactccctccgtccggaattatttgtcatagaaatggatgtatctaga 74
>RF00906;MIR1122;AF548379.1/5968-6092 37682:Aegilops tauschii
Length = 125
Score = 58.0 bits (29), Expect = 3e-08
Identities = 48/53 (90%), Gaps = 1/53 (1%)
Strand = Plus / Minus
Query: 42 atggatgtatctagaactaaaatatgtttaagatacatccaattctacgacaa 94
|||||||||||||||||||||||| || | ||||||||||| |||| ||||||
Sbjct: 78 atggatgtatctagaactaaaatacgtct-agatacatccatttctccgacaa 27
>RF00906;MIR1122;AY013754.1/1932-2046 37682:Aegilops tauschii
Length = 115
Score = 56.0 bits (28), Expect = 1e-07
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtctcggatatggatgtatctaga 56
|||||||||||||| |||||||||||| | ||||||||||||||||
Sbjct: 111 tactccctccgttccgaattacttgtcgcacgtatggatgtatctaga 64
Score = 50.1 bits (25), Expect = 7e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 25 aattacttgtctcggatatggatgtatctagaactaaaata 65
||||||| ||| | || ||||||||||||||||||||||||
Sbjct: 21 aattactcgtcgctgaaatggatgtatctagaactaaaata 61
>RF00906;MIR1122;CT009585.1/3980-4094 4565:Triticum aestivum
(bread wheat)
Length = 115
Score = 50.1 bits (25), Expect = 7e-06
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtctcggatatggatgtatctagaactaaaata 65
|||||||||||| | |||||||||||| | |||||||| |||||||||||||||
Sbjct: 5 tactccctccgtccagaattacttgtcatcaaaatggatgtgtctagaactaaaata 61
>RF00906;MIR1122;AY963808.1/10854-10720 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 50.1 bits (25), Expect = 7e-06
Identities = 35/37 (94%), Gaps = 1/37 (2%)
Strand = Plus / Minus
Query: 45 gatgtatctagaactaaaatatgtttaagatacatcc 81
|||||||||||||||||||||||| | ||||||||||
Sbjct: 85 gatgtatctagaactaaaatatgtct-agatacatcc 50
>RF00906;MIR1122;BT009295.1/1923-1809 4565:Triticum aestivum
(bread wheat)
Length = 115
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 42 atggatgtatctagaactaaaata 65
||||||||||||||||||||||||
Sbjct: 38 atggatgtatctagaactaaaata 61
>RF00906;MIR1122;AY951945.1/93583-93458 4568:Triticum monococcum
Length = 126
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 42 atggatgtatctagaactaaaata 65
||||||||||||||||||||||||
Sbjct: 48 atggatgtatctagaactaaaata 71
>RF00906;MIR1122;AF459639.1/191055-190921 4568:Triticum monococcum
Length = 135
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtct 36
|||||||||||||| |||||||||||||
Sbjct: 5 tactccctccgttccgaattacttgtct 32
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 8 ctactccctccgttcggaattacttgtctcggat 41
||||||||||||||| |||||||||||| ||||
Sbjct: 132 ctactccctccgttccaaattacttgtcttggat 99
>RF00906;MIR1122;DQ123819.1/2832-2966 4571:Triticum turgidum
Length = 135
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtct 36
|||||||||||||| |||||||||||||
Sbjct: 5 tactccctccgttctgaattacttgtct 32
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 5 aagctactccctccgttcggaattacttgtct 36
|||||||||||||||||| ||||||||||||
Sbjct: 135 aagctactccctccgttccaaattacttgtct 104
>RF00906;MIR1122;AY235466.1/780-656 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtctcggatatggatgtatctaga 56
|||||||||||| ||||| |||||||| || |||||||||||||||
Sbjct: 5 tactccctccgtccggaaatacttgtcgggggaatggatgtatctaga 52
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 42 atggatgtatctagaactaaaata 65
||||||||||||||||||||||||
Sbjct: 78 atggatgtatctagaactaaaata 55
>RF00906;MIR1122;AY368673.1/196592-196716 4571:Triticum turgidum
Length = 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 42 atggatgtatctagaactaaaata 65
||||||||||||||||||||||||
Sbjct: 48 atggatgtatctagaactaaaata 71
>RF00906;MIR1122;AY235464.1/714-838 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 42 atggatgtatctagaactaaaata 65
||||||||||||||||||||||||
Sbjct: 48 atggatgtatctagaactaaaata 71
Score = 48.1 bits (24), Expect = 3e-05
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtctcggatatggatgtatctaga 56
|||||||||||| ||||| |||||||| || |||||||||||||||
Sbjct: 121 tactccctccgtccggaaatacttgtcgggggaatggatgtatctaga 74
>RF00906;MIR1122;CT009586.1/21808-21942 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 48.1 bits (24), Expect = 3e-05
Identities = 34/36 (94%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 46 atgtatctagaactaaaatatgtttaagatacatcc 81
|||||| |||||||||||||||||||| ||||||||
Sbjct: 84 atgtatttagaactaaaatatgtttaa-atacatcc 50
>RF00906;MIR1122;EU282564.1/350-463 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 114
Score = 48.1 bits (24), Expect = 3e-05
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtctcggatatggatgtatctaga 56
||||||||| || | ||| |||||||| |||| |||||||||||||||
Sbjct: 5 tactccctctgtcccgaaatacttgtcgcggaaatggatgtatctaga 52
Score = 46.1 bits (23), Expect = 1e-04
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 23 ggaattacttgtctcggatatggatgtatctagaactaaaata 65
||||||||||||| || |||||||||||||||||| |||||
Sbjct: 97 ggaattacttgtcgtagaaatggatgtatctagaactgaaata 55
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 72 agatacatccaattctacgacaaggaattcc 102
||||||||||| |||||||||||| ||||||
Sbjct: 67 agatacatccatttctacgacaagtaattcc 97
>RF00906;MIR1122;AY643843.1/31186-31309 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 8 ctactccctccgttcggaattacttgtc 35
||||||||||||||||||| ||||||||
Sbjct: 121 ctactccctccgttcggaaatacttgtc 94
>RF00906;MIR1122;EU282650.1/1397-1273 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 42 atggatgtatctagaactaaaata 65
||||||||||||||||||||||||
Sbjct: 78 atggatgtatctagaactaaaata 55
>RF00906;MIR1122;AF474373.1/52258-52134 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtc 35
|||||||||||| ||||||||||||||
Sbjct: 121 tactccctccgtccggaattacttgtc 95
>RF00906;MIR1122;EU282737.1/1022-902 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 121
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtc 35
|||||||||||| ||||||||||||||
Sbjct: 121 tactccctccgtccggaattacttgtc 95
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 46 atgtatctagaactaaaatatgttta 71
|||||| |||||||||||||||||||
Sbjct: 74 atgtatttagaactaaaatatgttta 49
>RF00906;MIR1122;AF022725.1/11631-11507 4513:Hordeum vulgare
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtc 35
|||||||||||| ||||||||||||||
Sbjct: 5 tactccctccgtccggaattacttgtc 31
>RF00906;MIR1122;BT009606.1/1324-1200 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 44.1 bits (22), Expect = 4e-04
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 7 gctactccctccgttcggaattacttgtctcggatatggatgtatctaga 56
|||||||||||||||| |||||||| ||| || ||| |||||||||||
Sbjct: 123 gctactccctccgttcagaattactcgtccaagaaatgaatgtatctaga 74
>RF00906;MIR1122;FJ225151.1/115-1 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 10 actccctccgttcggaattacttgtc 35
||||||||||||||||| ||||||||
Sbjct: 1 actccctccgttcggaaatacttgtc 26
>RF00906;MIR1122;AY641411.1/11483-11599 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 117
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 42 atggatgtatctagaactaaaa 63
||||||||||||||||||||||
Sbjct: 39 atggatgtatctagaactaaaa 60
>RF00906;MIR1122;EU159422.1/10160-10283 37682:Aegilops tauschii
Length = 124
Score = 44.1 bits (22), Expect = 4e-04
Identities = 41/46 (89%), Gaps = 1/46 (2%)
Strand = Plus / Minus
Query: 42 atggatgtatctagaactaaaatatgtttaagatacatccaattct 87
|||||||||||||||| ||||||| || | ||||||||||| ||||
Sbjct: 78 atggatgtatctagaagtaaaatacgtct-agatacatccatttct 34
