miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;CT009625.1/8885-8999 37682:Aegilops tauschii
Length = 115
Score = 147 bits (74), Expect = 4e-35
Identities = 95/102 (93%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattactcgtccaaaaaatgaatgtacctagatgtattttagtt 68
||||||||| ||||| |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 111 tactccctctgttcgaaattactcgtccaagaaatgaatgtatctagatgtattttagtt 52
Query: 69 gtagatacatccatttttgtgacaagtaattcccaacggagg 110
||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 51 atagatacatccatttttatgacaagtaattccgaacggagg 10
Score = 52.0 bits (26), Expect = 2e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattactcgtccaaaaaatgaatgta 50
||||||||||||||||||||||| ||| ||||||| |||||
Sbjct: 5 tactccctccgttcggaattacttgtcataaaaatggatgta 46
>RF00906;MIR1122;BT009606.1/1324-1200 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 123 bits (62), Expect = 6e-28
Identities = 74/78 (94%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattactcgtccaaaaaatgaatgtacctagatgtattttagtt 68
|||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct: 121 tactccctccgttcagaattactcgtccaagaaatgaatgtatctagatgtattttaatt 62
Query: 69 gtagatacatccattttt 86
||||||||||||||||||
Sbjct: 61 gtagatacatccattttt 44
>RF00906;MIR1122;AY146587.2/110938-111052 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 115
Score = 117 bits (59), Expect = 3e-26
Identities = 92/103 (89%)
Strand = Plus / Minus
Query: 8 ttactccctccgttcggaattactcgtccaaaaaatgaatgtacctagatgtattttagt 67
||||||||||||||| |||||||| ||| |||||||| ||||| ||||| |||||||||
Sbjct: 112 ttactccctccgttctgaattacttgtcgaaaaaatggatgtatctagacatattttagt 53
Query: 68 tgtagatacatccatttttgtgacaagtaattcccaacggagg 110
| |||||||||||||||||| |||||||||||| ||||||||
Sbjct: 52 tctagatacatccatttttgagacaagtaattcggaacggagg 10
Score = 60.0 bits (30), Expect = 7e-09
Identities = 84/102 (82%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattactcgtccaaaaaatgaatgtacctagatgtattttagtt 68
|||||||||||||| |||||||| ||| ||||||| ||||| ||||| || || |
Sbjct: 5 tactccctccgttccgaattacttgtctcaaaaatggatgtatctagaactaaaatatgt 64
Query: 69 gtagatacatccatttttgtgacaagtaattcccaacggagg 110
||||||||||||||||| |||||||||||| ||||||||
Sbjct: 65 ctagatacatccattttttcgacaagtaattcagaacggagg 106
>RF00906;MIR1122;EF540321.1/236564-236678 4571:Triticum turgidum
Length = 115
Score = 111 bits (56), Expect = 2e-24
Identities = 80/88 (90%)
Strand = Plus / Plus
Query: 12 tccctccgttcggaattactcgtccaaaaaatgaatgtacctagatgtattttagttgta 71
||||||||||| ||||||||||||||| ||||| ||||| ||||||||||||||||| ||
Sbjct: 8 tccctccgttccgaattactcgtccaataaatggatgtatctagatgtattttagttata 67
Query: 72 gatacatccatttttgtgacaagtaatt 99
||||||||||||| || ||| |||||||
Sbjct: 68 gatacatccatttctgcgacgagtaatt 95
>RF00906;MIR1122;EU399684.1/4485-4371 4550:Secale cereale (rye)
Length = 115
Score = 107 bits (54), Expect = 3e-23
Identities = 90/102 (88%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattactcgtccaaaaaatgaatgtacctagatgtattttagtt 68
||||||||||||||||||||||| ||| | ||||| ||||| ||||| |||||||||||
Sbjct: 111 tactccctccgttcggaattacttgtctcagaaatggatgtatctagacgtattttagtt 52
Query: 69 gtagatacatccatttttgtgacaagtaattcccaacggagg 110
|||||| ||||||||| | ||||||||||||| ||||||||
Sbjct: 51 ctagatagatccattttcgagacaagtaattccgaacggagg 10
Score = 60.0 bits (30), Expect = 7e-09
Identities = 84/102 (82%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattactcgtccaaaaaatgaatgtacctagatgtattttagtt 68
||||||||||||||||||||||| ||| |||||| || || ||||| || || |
Sbjct: 5 tactccctccgttcggaattacttgtctcgaaaatggatctatctagaactaaaatacgt 64
Query: 69 gtagatacatccatttttgtgacaagtaattcccaacggagg 110
||||||||||||||| || ||||||||||||| ||||||||
Sbjct: 65 ctagatacatccatttctgagacaagtaattccgaacggagg 106
>RF00906;MIR1122;EU117148.1/1866-1980 4571:Triticum turgidum
Length = 115
Score = 93.7 bits (47), Expect = 5e-19
Identities = 80/91 (87%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattactcgtccaaaaaatgaatgtacctagatgtattttagtt 68
|||||||||||||| |||||||||||| | ||||| ||||| |||||||||||||||||
Sbjct: 5 tactccctccgttctgaattactcgtcgcagaaatggatgtatctagatgtattttagtt 64
Query: 69 gtagatacatccatttttgtgacaagtaatt 99
|||||| |||||||| || ||| |||||||
Sbjct: 65 ttagatatatccatttctgagacgagtaatt 95
>RF00906;MIR1122;AM932686.1/4713-4599 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 93.7 bits (47), Expect = 5e-19
Identities = 86/99 (86%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattactcgtccaaaaaatgaatgtacctagatgtattttagtt 68
||||||||||||||||||||||| ||| |||||| ||||| ||||| |||||||||||
Sbjct: 111 tactccctccgttcggaattacttgtcgcgaaaatggatgtatctagacgtattttagtt 52
Query: 69 gtagatacatccatttttgtgacaagtaattcccaacgg 107
|||||||||| ||||| | ||||| ||||||| |||||
Sbjct: 51 ctagatacatctattttcgagacaaataattccgaacgg 13
Score = 58.0 bits (29), Expect = 3e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 70 tagatacatccatttttgtgacaagtaattcccaacggagg 110
|||||||||||||||| | ||||||||||||| ||||||||
Sbjct: 66 tagatacatccattttcgcgacaagtaattccgaacggagg 106
>RF00906;MIR1122;AY491681.1/88752-88866 4568:Triticum monococcum
Length = 115
Score = 91.7 bits (46), Expect = 2e-18
Identities = 88/102 (86%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattactcgtccaaaaaatgaatgtacctagatgtattttagtt 68
|||||| |||||| ||||||||| ||| | ||||||||||| |||||||||||||||||
Sbjct: 111 tactccatccgtttggaattacttgtcgcagaaatgaatgtatctagatgtattttagtt 52
Query: 69 gtagatacatccatttttgtgacaagtaattcccaacggagg 110
||||||||||||| | | ||||||||||||| || |||||
Sbjct: 51 ctagatacatccatatccgagacaagtaattccgaatggagg 10
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 70 tagatacatccatttttgtgacaagtaattcccaacgga 108
||||||||| ||||| || ||||||||||||| ||||||
Sbjct: 66 tagatacattcatttctgcgacaagtaattccaaacgga 104
>RF00906;MIR1122;L41869.1/3010-3134 4513:Hordeum vulgare
Length = 125
Score = 87.7 bits (44), Expect = 3e-17
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattactcgtccaaaaaatgaatgtacctagatgtattttagtt 68
|||||||| ||| ||||| |||| ||||||| |||| ||||| |||||||||||||||||
Sbjct: 5 tactcccttcgtccggaaatacttgtccaaagaatggatgtatctagatgtattttagtt 64
Query: 69 gtagatacatccattt 84
|||||||||||||||
Sbjct: 65 atagatacatccattt 80
>RF00906;MIR1122;AY643843.1/31186-31309 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 85.7 bits (43), Expect = 1e-16
Identities = 64/71 (90%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattactcgtccaaaaaatgaatgtacctagatgtattttagtt 68
|||||||||||||||||| |||| |||| ||||||||||||| ||||| ||||||||||
Sbjct: 120 tactccctccgttcggaaatacttgtcctaaaaatgaatgtatctagacttattttagtt 61
Query: 69 gtagatacatc 79
||||||||||
Sbjct: 60 atagatacatc 50
>RF00906;MIR1122;AF325196.1/33744-33620 4565:Triticum aestivum
(bread wheat)
Length = 125
Score = 75.8 bits (38), Expect = 1e-13
Identities = 68/78 (87%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattactcgtccaaaaaatgaatgtacctagatgtattttagtt 68
|||||||||||| ||||| |||| ||| | |||||||| || |||||||||||||| ||
Sbjct: 121 tactccctccgtccggaaatacttgtcggagaaatgaatctatctagatgtattttaatt 62
Query: 69 gtagatacatccattttt 86
|||||||||||||||||
Sbjct: 61 ctagatacatccattttt 44
>RF00906;MIR1122;AM932682.1/94335-94221 4565:Triticum aestivum
(bread wheat)
Length = 115
Score = 73.8 bits (37), Expect = 5e-13
Identities = 76/89 (85%)
Strand = Plus / Plus
Query: 12 tccctccgttcggaattactcgtccaaaaaatgaatgtacctagatgtattttagttgta 71
|||||||||||||||||||| ||| | ||||| ||||| ||||| | ||| |||| ||
Sbjct: 8 tccctccgttcggaattacttgtcgtagaaatggatgtatctagacatttttcagttcta 67
Query: 72 gatacatccatttttgtgacaagtaattc 100
||||||||||||| || ||||||||||||
Sbjct: 68 gatacatccatttatgcgacaagtaattc 96
Score = 50.1 bits (25), Expect = 7e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 70 tagatacatccatttttgtgacaagtaattcccaacggagg 110
||||||||||||||| | ||||||||||||| ||||||||
Sbjct: 50 tagatacatccatttctacgacaagtaattccgaacggagg 10
>RF00906;MIR1122;AF459085.1/1867-1743 4513:Hordeum vulgare
Length = 125
Score = 71.9 bits (36), Expect = 2e-12
Identities = 66/76 (86%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattactcgtccaaaaaatgaatgtacctagatgtattttagtt 68
|||||||||||| |||||||| | ||| | ||||| ||||| ||||| |||||||||||
Sbjct: 121 tactccctccgtccggaattatttgtcatagaaatggatgtatctagacgtattttagtt 62
Query: 69 gtagatacatccattt 84
|||||||||||||||
Sbjct: 61 ctagatacatccattt 46
>RF00906;MIR1122;AY013754.1/1932-2046 37682:Aegilops tauschii
Length = 115
Score = 71.9 bits (36), Expect = 2e-12
Identities = 66/76 (86%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattactcgtccaaaaaatgaatgtacctagatgtattttagtt 68
|||||||||||||| |||||||| ||| | ||| ||||| |||||||||||||||||
Sbjct: 111 tactccctccgttccgaattacttgtcgcacgtatggatgtatctagatgtattttagtt 52
Query: 69 gtagatacatccattt 84
|||||||||||||||
Sbjct: 51 ctagatacatccattt 36
>RF00906;MIR1122;AY235466.1/780-656 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 67.9 bits (34), Expect = 3e-11
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 41 aatgaatgtacctagatgtattttagttgtagatacatccattttt 86
|||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 37 aatggatgtatctagatgtattttagttctagatacatccattttt 82
>RF00906;MIR1122;AY368673.1/196592-196716 4571:Triticum turgidum
Length = 125
Score = 67.9 bits (34), Expect = 3e-11
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 41 aatgaatgtacctagatgtattttagttgtagatacatccattttt 86
|||| ||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 89 aatggatgtacctagacgtattttagttctagatacatccattttt 44
>RF00906;MIR1122;AY235464.1/714-838 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 67.9 bits (34), Expect = 3e-11
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 41 aatgaatgtacctagatgtattttagttgtagatacatccattttt 86
|||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 89 aatggatgtatctagatgtattttagttctagatacatccattttt 44
>RF00906;MIR1122;EU282564.1/350-463 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 114
Score = 67.9 bits (34), Expect = 3e-11
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 40 aaatgaatgtacctagatgtattttagttgtagatacatccatttttgtgacaagtaatt 99
||||| ||||| |||||||||||| |||| ||||||||||||||| | |||||||||||
Sbjct: 36 aaatggatgtatctagatgtatttcagttctagatacatccatttctacgacaagtaatt 95
Query: 100 cc 101
||
Sbjct: 96 cc 97
>RF00906;MIR1122;EU282650.1/1397-1273 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 67.9 bits (34), Expect = 3e-11
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 41 aatgaatgtacctagatgtattttagttgtagatacatccattttt 86
|||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 37 aatggatgtatctagatgtattttagttctagatacatccattttt 82
>RF00906;MIR1122;AF548379.1/5968-6092 37682:Aegilops tauschii
Length = 125
Score = 67.9 bits (34), Expect = 3e-11
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattactcgtccaaaaaatgaatgtacctagatgtattttagtt 68
|||||||||||| || ||||| | ||| | ||||| ||||| ||||| |||||||||||
Sbjct: 5 tactccctccgtccgaaattatttgtcggagaaatggatgtatctagacgtattttagtt 64
Query: 69 gtagatacatccattttt 86
|||||||||||||||||
Sbjct: 65 ctagatacatccattttt 82
>RF00906;MIR1122;CT009585.1/3980-4094 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 65.9 bits (33), Expect = 1e-10
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 52 ctagatgtattttagttgtagatacatccatttttgtgacaagtaattc 100
||||||||||||||||| |||| ||||||||||| |||||||||||||
Sbjct: 68 ctagatgtattttagttctagacacatccattttgatgacaagtaattc 20
>RF00906;MIR1122;EU096089.1/6299-6422 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 124
Score = 65.9 bits (33), Expect = 1e-10
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattactcgtccaaaaaatgaatgtacctagatgtattttagtt 68
|||||||||||| ||||| |||| |||| | | ||||||||| ||||| ||||||||||
Sbjct: 120 tactccctccgtccggaaatacttgtcctagagatgaatgtatctagacttattttagtt 61
Query: 69 gtagatacatcca 81
||||||||||||
Sbjct: 60 atagatacatcca 48
>RF00906;MIR1122;DQ245819.1/394-508 4577:Zea mays
Length = 115
Score = 61.9 bits (31), Expect = 2e-09
Identities = 82/99 (82%)
Strand = Plus / Minus
Query: 13 ccctccgttcggaattactcgtccaaaaaatgaatgtacctagatgtattttagttgtag 72
||||||||||||||||| | ||| ||||| || || ||||||||||||||||| ||
Sbjct: 107 ccctccgttcggaattaattgtcgcgaaaatagatatatctagatgtattttagttctaa 48
Query: 73 atacatccatttttgtgacaagtaattcccaacggagga 111
|||| ||||||| | |||| |||||||| |||||||||
Sbjct: 47 atacgtccatttccgagacaggtaattccaaacggagga 9
>RF00906;MIR1122;X13580.1/135-24 4565:Triticum aestivum (bread
wheat)
Length = 112
Score = 61.9 bits (31), Expect = 2e-09
Identities = 76/91 (83%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattactcgtccaaaaaatgaatgtacctagatgtattttagtt 68
||||||||||||| |||||| ||||| | |||| ||||| |||| ||||||||||||
Sbjct: 5 tactccctccgtttcgaattattcgtcgcagaaatagatgtatctagttgtattttagtt 64
Query: 69 gtagatacatccatttttgtgacaagtaatt 99
||||||||| ||||| || ||| |||||||
Sbjct: 65 ctagatacattcatttctgcgacgagtaatt 95
>RF00906;MIR1122;AB298184.1/15044-14931 4565:Triticum aestivum
(bread wheat)
Length = 114
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 46 atgtacctagatgtattttagttgtagatacatccattt 84
||||| ||||||||||||||||| |||||||||||||||
Sbjct: 41 atgtatctagatgtattttagttctagatacatccattt 79
>RF00906;MIR1122;AF474373.1/14703-14580 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 61.9 bits (31), Expect = 2e-09
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattactcgtccaaaaaatgaatgtacctagatgtattttagtt 68
||||||| |||| ||||| |||| |||| ||| ||||||||| ||| || ||||||||||
Sbjct: 120 tactccccccgtccggaaatacttgtcctaaagatgaatgtatctaaatttattttagtt 61
Query: 69 gtagatacatccatt 83
| ||||||||||||
Sbjct: 60 atggatacatccatt 46
>RF00906;MIR1122;AF474373.1/52258-52134 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 60.0 bits (30), Expect = 7e-09
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 41 aatgaatgtacctagatgtattttagttgtagatacatccattttt 86
|||| ||||| ||||||||||||||||| |||||| ||||||||||
Sbjct: 37 aatggatgtatctagatgtattttagttctagatatatccattttt 82
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 77 atccatttttgtgacaagtaattcccaacggagg 110
|||||||| |||||||||||||||| |||||||
Sbjct: 83 atccatttgtgtgacaagtaattccggacggagg 116
>RF00906;MIR1122;BT009295.1/1923-1809 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 58.0 bits (29), Expect = 3e-08
Identities = 62/73 (84%)
Strand = Plus / Minus
Query: 13 ccctccgttcggaattactcgtccaaaaaatgaatgtacctagatgtattttagttgtag 72
|||||||||| |||||||| ||| | ||| ||||| | ||||||||||||||| |||
Sbjct: 107 ccctccgttccgaattacttgtcgcacttatggatgtatcaagatgtattttagttctag 48
Query: 73 atacatccatttt 85
|||||||||||||
Sbjct: 47 atacatccatttt 35
>RF00906;MIR1122;FJ225151.1/115-1 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 58.0 bits (29), Expect = 3e-08
Identities = 59/69 (85%)
Strand = Plus / Minus
Query: 10 actccctccgttcggaattactcgtccaaaaaatgaatgtacctagatgtattttagttg 69
||||||||||| | || |||||||| || ||| |||||| |||||||||||||||||
Sbjct: 115 actccctccgtctgaaaatactcgtcggaagaattaatgtatctagatgtattttagttc 56
Query: 70 tagatacat 78
|||||||||
Sbjct: 55 tagatacat 47
>RF00906;MIR1122;AF521177.1/9890-9767 4513:Hordeum vulgare
Length = 124
Score = 58.0 bits (29), Expect = 3e-08
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 7 attactccctccgttcggaattactcgtccaaaaaatgaatgtacctagatgtattttag 66
|||||| ||||||| ||||| |||| |||| | | ||||||||| ||||| |||| ||
Sbjct: 122 attactacctccgtccggaaatacttgtcctacagatgaatgtatctagacttattctaa 63
Query: 67 ttgtagatacatccatt 83
|||||||||||||||||
Sbjct: 62 ttgtagatacatccatt 46
>RF00906;MIR1122;AB095006.1/1949-2072 4565:Triticum aestivum
(bread wheat)
Length = 124
Score = 56.0 bits (28), Expect = 1e-07
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 39 aaaatgaatgtacctagatgtattttagttgtagatacatccattttt 86
|||||||||||| |||| ||||||||||| || ||||||||||||||
Sbjct: 91 aaaatgaatgtatttagacgtattttagttctacatacatccattttt 44
>RF00906;MIR1122;AY951945.1/36609-36485 4568:Triticum monococcum
Length = 125
Score = 56.0 bits (28), Expect = 1e-07
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 47 tgtacctagatgtattttagttgtagatacatccattttt 86
|||| ||||||||||||||||| ||||||||| |||||||
Sbjct: 43 tgtatctagatgtattttagttctagatacattcattttt 82
>RF00906;MIR1122;AY951945.1/93583-93458 4568:Triticum monococcum
Length = 126
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 54 agatgtattttagttgtagatacatccattt 84
||||||||||||||| |||||||||||||||
Sbjct: 76 agatgtattttagttctagatacatccattt 46
>RF00906;MIR1122;AB238931.1/2749-2883 4568:Triticum monococcum
Length = 135
Score = 54.0 bits (27), Expect = 4e-07
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 46 atgtacctagatgtattttagttgtagatacatccatttttgt 88
||||| ||||||||||||||||| || |||||||| |||||||
Sbjct: 84 atgtatctagatgtattttagttctaaatacatccctttttgt 42
>RF00906;MIR1122;DQ445236.1/8526-8403 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 124
Score = 54.0 bits (27), Expect = 4e-07
Identities = 63/75 (84%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattactcgtccaaaaaatgaatgtacctagatgtattttagtt 68
|||||||||||| ||||| |||| || | || |||||| || ||||| ||||||||||
Sbjct: 120 tactccctccgtccggaaatacttgttctaaggatgaatatatctagacttattttagtt 61
Query: 69 gtagatacatccatt 83
||||||||||||||
Sbjct: 60 atagatacatccatt 46
>RF00906;MIR1122;EU159422.1/10160-10283 37682:Aegilops tauschii
Length = 124
Score = 54.0 bits (27), Expect = 4e-07
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 40 aaatgaatgtacctagatgtattttagttgtagatacatccattttt 86
||||| ||||| ||||| |||||||| || |||||||||||||||||
Sbjct: 36 aaatggatgtatctagacgtattttacttctagatacatccattttt 82
>RF00906;MIR1122;DQ889708.1/343-221 4565:Triticum aestivum (bread
wheat)
Length = 123
Score = 52.0 bits (26), Expect = 2e-06
Identities = 68/82 (82%)
Strand = Plus / Plus
Query: 20 ttcggaattactcgtccaaaaaatgaatgtacctagatgtattttagttgtagatacatc 79
|||||||||||| ||| | ||||| ||||| ||||| | |||||||| |||||||||
Sbjct: 24 ttcggaattacttgtcgcagaaatggatgtatctagacgagttttagttctagatacatt 83
Query: 80 catttttgtgacaagtaattcc 101
|||||| | ||||||||||||
Sbjct: 84 cattttcgaaacaagtaattcc 105
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 70 tagatacatccatttttgtgacaagtaattcc 101
||||||||||||||| || |||||||||||||
Sbjct: 58 tagatacatccatttctgcgacaagtaattcc 27
>RF00906;MIR1122;AF022725.1/11631-11507 4513:Hordeum vulgare
Length = 125
Score = 52.0 bits (26), Expect = 2e-06
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 41 aatgaatgtacctagatgtattttagttgtagatacatccattttt 86
|||| ||||| ||||||||||| || || |||||||||||||||||
Sbjct: 89 aatgtatgtatctagatgtattataattctagatacatccattttt 44
>RF00906;MIR1122;DQ445241.1/4641-4518 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 50.1 bits (25), Expect = 7e-06
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattactcgtccaaaaaatgaatgtacctagatgtattttagtt 68
|||||||| |||||| || |||| |||| |||| | ||||| ||||| ||||||| ||
Sbjct: 5 tactcccttcgttcgaaaatacttgtcctaaaagtagatgtatctagacttattttactt 64
Query: 69 gtagatacatccatttt 85
||||||||||||||||
Sbjct: 65 atagatacatccatttt 81
>RF00906;MIR1122;DQ145552.1/668-803 4573:Aegilops speltoides
Length = 136
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 46 atgtacctagatgtattttagttgtagatacat 78
||||| ||||||||||||||||| |||||||||
Sbjct: 84 atgtatctagatgtattttagttctagatacat 52
>RF00906;MIR1122;EF081030.1/6132-5986 4572:Triticum urartu
Length = 147
Score = 48.1 bits (24), Expect = 3e-05
Identities = 75/92 (81%)
Strand = Plus / Plus
Query: 8 ttactccctccgttcggaattactcgtccaaaaaatgaatgtacctagatgtattttagt 67
||||||||| ||||| |||||||| ||| | | |||||| || || ||||||||||||
Sbjct: 4 ttactcccttcgttccgaattacttgtcacagatatgaatatatataaatgtattttagt 63
Query: 68 tgtagatacatccatttttgtgacaagtaatt 99
| |||||| || ||||| || ||| |||||||
Sbjct: 64 tctagatatattcatttctgcgacgagtaatt 95
>RF00906;MIR1122;AB298185.1/18759-18893 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 46 atgtacctagatgtattttagttgtagataca 77
||||| ||||||||||||||||| ||||||||
Sbjct: 84 atgtatctagatgtattttagttctagataca 53
>RF00906;MIR1122;AY641411.1/11483-11599 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 117
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 70 tagatacatccatttttgtgacaagtaattcc 101
|||||||||||||||||| | |||||||||||
Sbjct: 68 tagatacatccatttttgcggcaagtaattcc 99
Score = 44.1 bits (22), Expect = 4e-04
Identities = 62/74 (83%), Gaps = 1/74 (1%)
Strand = Plus / Minus
Query: 12 tccctccgttcggaattactcgtccaaaaaatgaatgtacctagatgtatttt-agttgt 70
|||||| || |||||||||| | | ||||||| ||||| ||||| | ||||| |||| |
Sbjct: 110 tccctctgtccggaattacttgccgcaaaaatggatgtatctagacgcatttttagttct 51
Query: 71 agatacatccattt 84
||||||||||||||
Sbjct: 50 agatacatccattt 37
>RF00906;MIR1122;AY853252.1/156228-156351 4513:Hordeum vulgare
Length = 124
Score = 48.1 bits (24), Expect = 3e-05
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 28 tactcgtccaaaaaatgaatgtacctagatgtattttagttgtagatacatccatt 83
|||| |||| ||||||| ||| | ||||| |||||||||| ||||||||||||||
Sbjct: 24 tacttgtcctaaaaatggatgaatctagacttattttagttatagatacatccatt 79
>RF00906;MIR1122;DJ023136.1/240-116 4513:Hordeum vulgare
Length = 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 63/76 (82%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattactcgtccaaaaaatgaatgtacctagatgtattttagtt 68
|||||||||||| | || |||| ||| ||| |||| ||||| ||||||| |||||||||
Sbjct: 121 tactccctccgtcagaaaatacttgtcgaaagaatggatgtatctagatgcattttagtt 62
Query: 69 gtagatacatccattt 84
|| |||||| |||||
Sbjct: 61 ctaaatacattcattt 46
>RF00906;MIR1122;AF254799.1/60623-60744 4513:Hordeum vulgare
Length = 122
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 70 tagatacatccatttttgtgacaagtaattcc 101
|||||||||| |||||| ||||||||||||||
Sbjct: 73 tagatacatctatttttatgacaagtaattcc 104
>RF00906;MIR1122;DQ904440.1/75385-75530 52163:Triticum monococcum
subsp. aegilopoides
Length = 146
Score = 46.1 bits (23), Expect = 1e-04
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 46 atgtacctagatgtattttagttgtagatacatccatttttgt 88
||||| ||||||||||||||||| || ||||||| |||||||
Sbjct: 63 atgtatctagatgtattttagttctacatacatctctttttgt 105
>RF00906;MIR1122;AF459639.1/191055-190921 4568:Triticum monococcum
Length = 135
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 6 aattactccctccgttcggaattact 31
||||||||||||||||| ||||||||
Sbjct: 2 aattactccctccgttccgaattact 27
>RF00906;MIR1122;EU282737.1/1022-902 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 121
Score = 44.1 bits (22), Expect = 4e-04
Identities = 64/78 (82%)
Strand = Plus / Plus
Query: 7 attactccctccgttcggaattactcgtccaaaaaatgaatgtacctagatgtattttag 66
|||||||||||||| |||||||||| | | ||||||| ||| | ||| | ||||||||
Sbjct: 3 attactccctccgtccggaattacttgacataaaaatggatgcatctaaacatattttag 62
Query: 67 ttgtagatacatccattt 84
|| || |||||| |||||
Sbjct: 63 ttctaaatacattcattt 80
