miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU399684.1/4485-4371 4550:Secale cereale (rye)
Length = 115
Score = 133 bits (67), Expect = 6e-31
Identities = 97/107 (90%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacatgtcgtagaaatggatgtatttagatgtattttaatt 68
|||||||||||||||||||||| |||| |||||||||||||| |||| |||||||| ||
Sbjct: 111 tactccctccgttcggaattacttgtctcagaaatggatgtatctagacgtattttagtt 52
Query: 69 ctagatatatccatttccgagacaagtaattcggaacgtagggagta 115
||||||| |||||||| ||||||||||||||| ||||| ||||||||
Sbjct: 51 ctagatagatccattttcgagacaagtaattccgaacggagggagta 5
Score = 71.9 bits (36), Expect = 2e-12
Identities = 90/108 (83%)
Strand = Plus / Plus
Query: 8 ctactccctccgttcggaattacatgtcgtagaaatggatgtatttagatgtattttaat 67
||||||||||||||||||||||| |||| |||||||| ||| |||| || ||
Sbjct: 4 ctactccctccgttcggaattacttgtctcgaaaatggatctatctagaactaaaatacg 63
Query: 68 tctagatatatccatttccgagacaagtaattcggaacgtagggagta 115
|||||||| ||||||||| |||||||||||||| ||||| ||||||||
Sbjct: 64 tctagatacatccatttctgagacaagtaattccgaacggagggagta 111
>RF00906;MIR1122;AY491681.1/88752-88866 4568:Triticum monococcum
Length = 115
Score = 125 bits (63), Expect = 1e-28
Identities = 99/111 (89%)
Strand = Plus / Minus
Query: 5 attctactccctccgttcggaattacatgtcgtagaaatggatgtatttagatgtatttt 64
|||||||||| |||||| |||||||| ||||| ||||||| |||||| ||||||||||||
Sbjct: 115 attctactccatccgtttggaattacttgtcgcagaaatgaatgtatctagatgtatttt 56
Query: 65 aattctagatatatccatttccgagacaagtaattcggaacgtagggagta 115
| ||||||||| |||||| ||||||||||||||||| ||| | ||||||||
Sbjct: 55 agttctagatacatccatatccgagacaagtaattccgaatggagggagta 5
>RF00906;MIR1122;EU117148.1/1866-1980 4571:Triticum turgidum
Length = 115
Score = 123 bits (62), Expect = 6e-28
Identities = 95/106 (89%)
Strand = Plus / Plus
Query: 8 ctactccctccgttcggaattacatgtcgtagaaatggatgtatttagatgtattttaat 67
||||||||||||||| ||||||| |||| |||||||||||||| ||||||||||||| |
Sbjct: 4 ctactccctccgttctgaattactcgtcgcagaaatggatgtatctagatgtattttagt 63
Query: 68 tctagatatatccatttccgagacaagtaattcggaacgtagggag 113
| |||||||||||||||| ||||| ||||||| |||||| ||||||
Sbjct: 64 tttagatatatccatttctgagacgagtaatttggaacggagggag 109
>RF00906;MIR1122;AY146587.2/110938-111052 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 115
Score = 117 bits (59), Expect = 4e-26
Identities = 95/107 (88%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacatgtcgtagaaatggatgtatttagatgtattttaatt 68
|||||||||||||| ||||||| ||||| | |||||||||||| |||| ||||||| ||
Sbjct: 111 tactccctccgttctgaattacttgtcgaaaaaatggatgtatctagacatattttagtt 52
Query: 69 ctagatatatccatttccgagacaagtaattcggaacgtagggagta 115
||||||| |||||||| |||||||||||||||||||| ||||||||
Sbjct: 51 ctagatacatccatttttgagacaagtaattcggaacggagggagta 5
Score = 54.0 bits (27), Expect = 4e-07
Identities = 87/107 (81%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacatgtcgtagaaatggatgtatttagatgtattttaatt 68
|||||||||||||| ||||||| |||| | |||||||||||| |||| || || |
Sbjct: 5 tactccctccgttccgaattacttgtctcaaaaatggatgtatctagaactaaaatatgt 64
Query: 69 ctagatatatccatttccgagacaagtaattcggaacgtagggagta 115
||||||| |||||||| |||||||||||| ||||| ||||||||
Sbjct: 65 ctagatacatccattttttcgacaagtaattcagaacggagggagta 111
>RF00906;MIR1122;AM932682.1/94335-94221 4565:Triticum aestivum
(bread wheat)
Length = 115
Score = 101 bits (51), Expect = 2e-21
Identities = 84/95 (88%)
Strand = Plus / Plus
Query: 12 tccctccgttcggaattacatgtcgtagaaatggatgtatttagatgtattttaattcta 71
||||||||||||||||||| |||||||||||||||||||| |||| | ||| | |||||
Sbjct: 8 tccctccgttcggaattacttgtcgtagaaatggatgtatctagacatttttcagttcta 67
Query: 72 gatatatccatttccgagacaagtaattcggaacg 106
|||| |||||||| | ||||||||||||||||||
Sbjct: 68 gatacatccatttatgcgacaagtaattcggaacg 102
>RF00906;MIR1122;AM932686.1/4713-4599 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 99.6 bits (50), Expect = 8e-21
Identities = 86/98 (87%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacatgtcgtagaaatggatgtatttagatgtattttaatt 68
|||||||||||||||||||||| ||||| |||||||||||| |||| |||||||| ||
Sbjct: 111 tactccctccgttcggaattacttgtcgcgaaaatggatgtatctagacgtattttagtt 52
Query: 69 ctagatatatccatttccgagacaagtaattcggaacg 106
||||||| ||| |||| |||||||| |||||| |||||
Sbjct: 51 ctagatacatctattttcgagacaaataattccgaacg 14
Score = 58.0 bits (29), Expect = 3e-08
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 68 tctagatatatccatttccgagacaagtaattcggaacgtagggagtat 116
|||||||| |||||||| || |||||||||||| ||||| |||||||||
Sbjct: 64 tctagatacatccattttcgcgacaagtaattccgaacggagggagtat 112
>RF00906;MIR1122;AF459085.1/1867-1743 4513:Hordeum vulgare
Length = 125
Score = 89.7 bits (45), Expect = 8e-18
Identities = 69/77 (89%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacatgtcgtagaaatggatgtatttagatgtattttaatt 68
|||||||||||| |||||||| |||| ||||||||||||||| |||| |||||||| ||
Sbjct: 121 tactccctccgtccggaattatttgtcatagaaatggatgtatctagacgtattttagtt 62
Query: 69 ctagatatatccatttc 85
||||||| |||||||||
Sbjct: 61 ctagatacatccatttc 45
>RF00906;MIR1122;EF540321.1/236564-236678 4571:Triticum turgidum
Length = 115
Score = 87.7 bits (44), Expect = 3e-17
Identities = 89/104 (85%)
Strand = Plus / Plus
Query: 12 tccctccgttcggaattacatgtcgtagaaatggatgtatttagatgtattttaattcta 71
||||||||||| ||||||| ||| | |||||||||||| ||||||||||||| || ||
Sbjct: 8 tccctccgttccgaattactcgtccaataaatggatgtatctagatgtattttagttata 67
Query: 72 gatatatccatttccgagacaagtaattcggaacgtagggagta 115
|||| ||||||||| | ||| ||||||| |||||| ||||||||
Sbjct: 68 gatacatccatttctgcgacgagtaatttggaacggagggagta 111
Score = 46.1 bits (23), Expect = 1e-04
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacatgtcgtagaaatggatgtat 51
|||||||||||||| |||||| |||| ||||||||||||||
Sbjct: 111 tactccctccgttccaaattactcgtcgcagaaatggatgtat 69
>RF00906;MIR1122;AF325196.1/33744-33620 4565:Triticum aestivum
(bread wheat)
Length = 125
Score = 87.7 bits (44), Expect = 3e-17
Identities = 68/76 (89%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacatgtcgtagaaatggatgtatttagatgtattttaatt 68
|||||||||||| ||||| ||| ||||| ||||||| || ||| ||||||||||||||||
Sbjct: 121 tactccctccgtccggaaatacttgtcggagaaatgaatctatctagatgtattttaatt 62
Query: 69 ctagatatatccattt 84
||||||| ||||||||
Sbjct: 61 ctagatacatccattt 46
>RF00906;MIR1122;AY013754.1/1932-2046 37682:Aegilops tauschii
Length = 115
Score = 85.7 bits (43), Expect = 1e-16
Identities = 79/91 (86%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacatgtcgtagaaatggatgtatttagatgtattttaatt 68
|||||||||||||| ||||||| ||||| | |||||||||| ||||||||||||| ||
Sbjct: 111 tactccctccgttccgaattacttgtcgcacgtatggatgtatctagatgtattttagtt 52
Query: 69 ctagatatatccatttccgagacaagtaatt 99
||||||| ||||||||| | ||| |||||||
Sbjct: 51 ctagatacatccatttcagcgacgagtaatt 21
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 89 gacaagtaattcggaacgtagggagta 115
|||||||||||||||||| ||||||||
Sbjct: 85 gacaagtaattcggaacggagggagta 111
>RF00906;MIR1122;AB298184.1/15044-14931 4565:Triticum aestivum
(bread wheat)
Length = 114
Score = 83.8 bits (42), Expect = 5e-16
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 42 atggatgtatttagatgtattttaattctagatatatccatttccgagacaagtaattcg 101
|||||||||| ||||||||||||| ||||||||| ||||||||| | ||| ||||||| |
Sbjct: 37 atggatgtatctagatgtattttagttctagatacatccatttcagcgacgagtaatttg 96
Query: 102 gaacgtagggagta 115
||||| ||||||||
Sbjct: 97 gaacggagggagta 110
Score = 46.1 bits (23), Expect = 1e-04
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 6 ttctactccctccgttcggaattacatgtcgtagaaatggatgtatttaga 56
||||||||||||||||| |||||| |||| ||||||||||||| ||||
Sbjct: 113 ttctactccctccgttccaaattactcgtcgctgaaatggatgtatctaga 63
>RF00906;MIR1122;BT009606.1/1324-1200 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 81.8 bits (41), Expect = 2e-15
Identities = 68/77 (88%)
Strand = Plus / Minus
Query: 8 ctactccctccgttcggaattacatgtcgtagaaatggatgtatttagatgtattttaat 67
||||||||||||||| ||||||| ||| ||||||| |||||| |||||||||||||||
Sbjct: 122 ctactccctccgttcagaattactcgtccaagaaatgaatgtatctagatgtattttaat 63
Query: 68 tctagatatatccattt 84
| |||||| ||||||||
Sbjct: 62 tgtagatacatccattt 46
>RF00906;MIR1122;EU282650.1/1397-1273 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 81.8 bits (41), Expect = 2e-15
Identities = 68/77 (88%)
Strand = Plus / Plus
Query: 8 ctactccctccgttcggaattacatgtcgtagaaatggatgtatttagatgtattttaat 67
|||||||| |||| ||||| ||| |||| ||| ||||||||||| ||||||||||||| |
Sbjct: 4 ctactcccgccgtccggaaatacttgtcataggaatggatgtatctagatgtattttagt 63
Query: 68 tctagatatatccattt 84
|||||||| ||||||||
Sbjct: 64 tctagatacatccattt 80
>RF00906;MIR1122;AY235466.1/780-656 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 79.8 bits (40), Expect = 8e-15
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacatgtcgtagaaatggatgtatttagatgtattttaatt 68
|||||||||||| ||||| ||| ||||| | ||||||||||| ||||||||||||| ||
Sbjct: 5 tactccctccgtccggaaatacttgtcgggggaatggatgtatctagatgtattttagtt 64
Query: 69 ctagatatatccattt 84
||||||| ||||||||
Sbjct: 65 ctagatacatccattt 80
>RF00906;MIR1122;AY235464.1/714-838 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 79.8 bits (40), Expect = 8e-15
Identities = 67/76 (88%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacatgtcgtagaaatggatgtatttagatgtattttaatt 68
|||||||||||| ||||| ||| ||||| | ||||||||||| ||||||||||||| ||
Sbjct: 121 tactccctccgtccggaaatacttgtcgggggaatggatgtatctagatgtattttagtt 62
Query: 69 ctagatatatccattt 84
||||||| ||||||||
Sbjct: 61 ctagatacatccattt 46
>RF00906;MIR1122;AF474373.1/52258-52134 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 79.8 bits (40), Expect = 8e-15
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacatgtcgtagaaatggatgtatttagatgtattttaatt 68
||||||||| || ||||| || |||| ||| ||||||||||| ||||||||||||| ||
Sbjct: 5 tactccctctgtccggaaatatttgtcataggaatggatgtatctagatgtattttagtt 64
Query: 69 ctagatatatccattt 84
||||||||||||||||
Sbjct: 65 ctagatatatccattt 80
>RF00906;MIR1122;CT009625.1/8885-8999 37682:Aegilops tauschii
Length = 115
Score = 79.8 bits (40), Expect = 8e-15
Identities = 91/108 (84%)
Strand = Plus / Minus
Query: 8 ctactccctccgttcggaattacatgtcgtagaaatggatgtatttagatgtattttaat 67
|||||||||| ||||| |||||| ||| ||||||| |||||| ||||||||||||| |
Sbjct: 112 ctactccctctgttcgaaattactcgtccaagaaatgaatgtatctagatgtattttagt 53
Query: 68 tctagatatatccatttccgagacaagtaattcggaacgtagggagta 115
| |||||| |||||||| |||||||||||| ||||| ||||||||
Sbjct: 52 tatagatacatccatttttatgacaagtaattccgaacggagggagta 5
Score = 61.9 bits (31), Expect = 2e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacatgtcgtagaaatggatgtat 51
|||||||||||||||||||||| |||| || ||||||||||||
Sbjct: 5 tactccctccgttcggaattacttgtcataaaaatggatgtat 47
>RF00906;MIR1122;AF548379.1/5968-6092 37682:Aegilops tauschii
Length = 125
Score = 79.8 bits (40), Expect = 8e-15
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacatgtcgtagaaatggatgtatttagatgtattttaatt 68
|||||||||||| || ||||| ||||| |||||||||||||| |||| |||||||| ||
Sbjct: 5 tactccctccgtccgaaattatttgtcggagaaatggatgtatctagacgtattttagtt 64
Query: 69 ctagatatatccattt 84
||||||| ||||||||
Sbjct: 65 ctagatacatccattt 80
>RF00906;MIR1122;DQ889708.1/343-221 4565:Triticum aestivum (bread
wheat)
Length = 123
Score = 73.8 bits (37), Expect = 5e-13
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 20 ttcggaattacatgtcgtagaaatggatgtatttagatgtattttaattctagatatatc 79
||||||||||| ||||| |||||||||||||| |||| | ||||| ||||||||| ||
Sbjct: 24 ttcggaattacttgtcgcagaaatggatgtatctagacgagttttagttctagatacatt 83
Query: 80 catttccgagacaagtaattc 100
||||| ||| |||||||||||
Sbjct: 84 cattttcgaaacaagtaattc 104
>RF00906;MIR1122;CT009585.1/3980-4094 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 73.8 bits (37), Expect = 5e-13
Identities = 91/109 (83%)
Strand = Plus / Minus
Query: 8 ctactccctccgttcggaattacatgtcgtagaaatggatgtatttagatgtattttaat 67
||||||||||||| || || ||| |||| | ||||||||| ||| ||||||||||||| |
Sbjct: 112 ctactccctccgtccgaaaatacttgtcattgaaatggatatatctagatgtattttagt 53
Query: 68 tctagatatatccatttccgagacaagtaattcggaacgtagggagtat 116
|||||| | |||||||| |||||||||||| | ||| |||||||||
Sbjct: 52 tctagacacatccattttgatgacaagtaattctggacggagggagtat 4
>RF00906;MIR1122;DQ245819.1/394-508 4577:Zea mays
Length = 115
Score = 71.9 bits (36), Expect = 2e-12
Identities = 75/88 (85%)
Strand = Plus / Minus
Query: 13 ccctccgttcggaattacatgtcgtagaaatggatgtatttagatgtattttaattctag 72
||||||||||||||||| ||||| |||| ||| ||| ||||||||||||| |||||
Sbjct: 107 ccctccgttcggaattaattgtcgcgaaaatagatatatctagatgtattttagttctaa 48
Query: 73 atatatccatttccgagacaagtaattc 100
||| ||||||||||||||| |||||||
Sbjct: 47 atacgtccatttccgagacaggtaattc 20
>RF00906;MIR1122;EU282564.1/350-463 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 114
Score = 71.9 bits (36), Expect = 2e-12
Identities = 78/92 (84%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacatgtcgtagaaatggatgtatttagatgtattttaatt 68
||||||||| || | ||| ||| ||||| ||||||||||||| ||||||||||| | ||
Sbjct: 5 tactccctctgtcccgaaatacttgtcgcggaaatggatgtatctagatgtatttcagtt 64
Query: 69 ctagatatatccatttccgagacaagtaattc 100
||||||| ||||||||| ||||||||||||
Sbjct: 65 ctagatacatccatttctacgacaagtaattc 96
Score = 58.0 bits (29), Expect = 3e-08
Identities = 77/93 (82%)
Strand = Plus / Minus
Query: 23 ggaattacatgtcgtagaaatggatgtatttagatgtattttaattctagatatatccat 82
|||||||| |||||||||||||||||||| |||| | || |||||||| ||||||
Sbjct: 97 ggaattacttgtcgtagaaatggatgtatctagaactgaaatacatctagatacatccat 38
Query: 83 ttccgagacaagtaattcggaacgtagggagta 115
||||| |||||||| ||||| || ||||||||
Sbjct: 37 ttccgcgacaagtatttcgggacagagggagta 5
>RF00906;MIR1122;BT009295.1/1923-1809 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 65.9 bits (33), Expect = 1e-10
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 8 ctactccctccgttcggaattacatgtcgtagaaatggatgtatttagatgtattttaat 67
|||| |||||||||| ||||||| ||||| | |||||||||| |||||||||||| |
Sbjct: 112 ctacgccctccgttccgaattacttgtcgcacttatggatgtatcaagatgtattttagt 53
Query: 68 tctagatatatccattt 84
|||||||| ||||||||
Sbjct: 52 tctagatacatccattt 36
>RF00906;MIR1122;AY533103.1/332-199 4565:Triticum aestivum (bread
wheat)
Length = 134
Score = 63.9 bits (32), Expect = 5e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 44 ggatgtatttagatgtattttaattctagatatatc 79
|||||||||||||||||||||| |||||||||||||
Sbjct: 49 ggatgtatttagatgtattttagttctagatatatc 84
>RF00906;MIR1122;EU159422.1/10160-10283 37682:Aegilops tauschii
Length = 124
Score = 63.9 bits (32), Expect = 5e-10
Identities = 65/76 (85%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacatgtcgtagaaatggatgtatttagatgtattttaatt 68
|||| ||| |||||||| ||| |||| |||||||||||||| |||| |||||||| ||
Sbjct: 5 tactgcctacgttcggatatacttgtcagagaaatggatgtatctagacgtattttactt 64
Query: 69 ctagatatatccattt 84
||||||| ||||||||
Sbjct: 65 ctagatacatccattt 80
>RF00906;MIR1122;X13580.1/135-24 4565:Triticum aestivum (bread
wheat)
Length = 112
Score = 61.9 bits (31), Expect = 2e-09
Identities = 76/91 (83%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacatgtcgtagaaatggatgtatttagatgtattttaatt 68
||||||||||||| |||||| |||| |||||| ||||||| ||| ||||||||| ||
Sbjct: 5 tactccctccgtttcgaattattcgtcgcagaaatagatgtatctagttgtattttagtt 64
Query: 69 ctagatatatccatttccgagacaagtaatt 99
||||||| || |||||| | ||| |||||||
Sbjct: 65 ctagatacattcatttctgcgacgagtaatt 95
>RF00906;MIR1122;EF081030.1/6132-5986 4572:Triticum urartu
Length = 147
Score = 61.9 bits (31), Expect = 2e-09
Identities = 76/91 (83%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacatgtcgtagaaatggatgtatttagatgtattttaatt 68
|||||||| ||||| ||||||| |||| ||| ||| || ||| || |||||||||| ||
Sbjct: 5 tactcccttcgttccgaattacttgtcacagatatgaatatatataaatgtattttagtt 64
Query: 69 ctagatatatccatttccgagacaagtaatt 99
|||||||||| |||||| | ||| |||||||
Sbjct: 65 ctagatatattcatttctgcgacgagtaatt 95
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 89 gacaagtaattcggaacgtagggagta 115
|||||||||||||||||| ||||||||
Sbjct: 31 gacaagtaattcggaacgaagggagta 5
Score = 46.1 bits (23), Expect = 1e-04
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacatgtcgtagaaatggatgtat 51
|||||||||||||| ||||||| ||||| || ||||||||||
Sbjct: 143 tactccctccgttccgaattacttgtcgcaggtatggatgtat 101
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 89 gacaagtaattcggaacgtagggagta 115
|||||||||||||||||| ||||||||
Sbjct: 117 gacaagtaattcggaacggagggagta 143
>RF00906;MIR1122;AY643843.1/31186-31309 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 61.9 bits (31), Expect = 2e-09
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 5 attctactccctccgttcggaattacatgtcgtagaaatggatgtatttagatgtatttt 64
|||||||||||||||||||||| ||| |||| || ||||| |||||| |||| ||||||
Sbjct: 124 attctactccctccgttcggaaatacttgtcctaaaaatgaatgtatctagacttatttt 65
Query: 65 aattctagata 75
| || ||||||
Sbjct: 64 agttatagata 54
>RF00906;MIR1122;L41869.1/3010-3134 4513:Hordeum vulgare
Length = 125
Score = 58.0 bits (29), Expect = 3e-08
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 41 aatggatgtatttagatgtattttaattctagatatatccatttc 85
||||||||||| ||||||||||||| || |||||| |||||||||
Sbjct: 37 aatggatgtatctagatgtattttagttatagatacatccatttc 81
>RF00906;MIR1122;AF022725.1/11631-11507 4513:Hordeum vulgare
Length = 125
Score = 58.0 bits (29), Expect = 3e-08
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 32 tgtcgtagaaatggatgtatttagatgtattttaattctagatatatccattt 84
|||| ||| |||| |||||| |||||||||| |||||||||||| ||||||||
Sbjct: 98 tgtcataggaatgtatgtatctagatgtattataattctagatacatccattt 46
>RF00906;MIR1122;AF521177.1/27342-27466 4513:Hordeum vulgare
Length = 125
Score = 54.0 bits (27), Expect = 4e-07
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacatgtcgtagaaatggatgtatttagatgtattttaatt 68
|||| ||||||||||||| ||| ||| |||| ||| |||||| ||||| ||||||||||
Sbjct: 5 tactacctccgttcggaaatacttgttttagagatgaatgtatctagatttattttaatt 64
Query: 69 ctagata 75
||||||
Sbjct: 65 atagata 71
>RF00906;MIR1122;AF532104.1/14817-14951 37682:Aegilops tauschii
Length = 135
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 45 gatgtatttagatgtattttaattctagata 75
||||||| |||||||||||||||||||||||
Sbjct: 85 gatgtatctagatgtattttaattctagata 55
>RF00906;MIR1122;AY951945.1/93583-93458 4568:Triticum monococcum
Length = 126
Score = 50.1 bits (25), Expect = 7e-06
Identities = 65/77 (84%), Gaps = 1/77 (1%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacatgtcgtagaaatggatgtattta-gatgtattttaat 67
|||||||||||| || || ||| |||| || ||||||||||| | ||||||||||| |
Sbjct: 122 tactccctccgtccgaaaatacttgtccgaggaatggatgtatcaaagatgtattttagt 63
Query: 68 tctagatatatccattt 84
|||||||| ||||||||
Sbjct: 62 tctagatacatccattt 46
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacatgtcgtagaaatggat 47
|||||||||||| ||||| ||| ||||| ||||||||||
Sbjct: 5 tactccctccgtccggaaatacttgtcgcagaaatggat 43
>RF00906;MIR1122;AY146587.2/148630-148744 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 115
Score = 50.1 bits (25), Expect = 7e-06
Identities = 64/77 (83%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacatgtcgtagaaatggatgtatttagatgtattttaatt 68
||||| ||||||| |||||| |||| ||| ||| |||||| ||||| ||||||||||
Sbjct: 111 tactctctccgtttcgaattatttgtcataggtatgaatgtatctagatttattttaatt 52
Query: 69 ctagatatatccatttc 85
||||||| || ||||||
Sbjct: 51 ctagatacattcatttc 35
>RF00906;MIR1122;AB095006.1/1949-2072 4565:Triticum aestivum
(bread wheat)
Length = 124
Score = 50.1 bits (25), Expect = 7e-06
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 40 aaatggatgtatttagatgtattttaattctagatatatccattt 84
||||| ||||||||||| |||||||| ||||| ||| ||||||||
Sbjct: 90 aaatgaatgtatttagacgtattttagttctacatacatccattt 46
>RF00906;MIR1122;AY951945.1/36609-36485 4568:Triticum monococcum
Length = 125
Score = 50.1 bits (25), Expect = 7e-06
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 8 ctactccctccgttcggaattacatgtcgtagaaatggatgtatttagatgtattttaat 67
|||||||||| || || || ||| |||| | || |||| ||||| ||||||||||||| |
Sbjct: 4 ctactccctctgtccgaaaatacttgtcattgagatgggtgtatctagatgtattttagt 63
Query: 68 tctagatatatccattt 84
|||||||| || |||||
Sbjct: 64 tctagatacattcattt 80
>RF00906;MIR1122;EU096089.1/6299-6422 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 124
Score = 50.1 bits (25), Expect = 7e-06
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacatgtcgtagaaatggatgtatttagatgtattttaatt 68
|||||||||||| ||||| ||| |||| |||| ||| |||||| |||| ||||||| ||
Sbjct: 120 tactccctccgtccggaaatacttgtcctagagatgaatgtatctagacttattttagtt 61
Query: 69 ctagatatatcca 81
|||||| |||||
Sbjct: 60 atagatacatcca 48
>RF00906;MIR1122;AF459639.1/191055-190921 4568:Triticum monococcum
Length = 135
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 88 agacaagtaattcggaacgtagggagta 115
||||||||||||||||||| ||||||||
Sbjct: 32 agacaagtaattcggaacggagggagta 5
>RF00906;MIR1122;EF028786.1/1091-968 4565:Triticum aestivum (bread
wheat)
Length = 124
Score = 48.1 bits (24), Expect = 3e-05
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacatgtcgtagaaatggatgtatttagatgtattttaatt 68
|||||||||||| || || ||| |||| |||||| ||||||| |||| |||||||| ||
Sbjct: 5 tactccctccgtccgaaaatacttgtctgagaaattgatgtatctagacgtattttagtt 64
Query: 69 ctagatatatccattt 84
||| ||| || |||||
Sbjct: 65 ctaaatacattcattt 80
>RF00906;MIR1122;AB298185.1/18759-18893 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 44 ggatgtatttagatgtattttaattctagata 75
|||||||| ||||||||||||| |||||||||
Sbjct: 86 ggatgtatctagatgtattttagttctagata 55
>RF00906;MIR1122;AM932683.1/23310-23434 4565:Triticum aestivum
(bread wheat)
Length = 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacatgtcgtagaaatggatgtatttagatgtattttaatt 68
|||||| ||||| ||||| ||| ||||| | |||||||||||||||| ||||||| ||
Sbjct: 5 tactccttccgtccggaaatacttgtcgaaagaatggatgtatttagacatattttagtt 64
Query: 69 ctagatatatccattt 84
||||| ||||||||
Sbjct: 65 ttagatgcatccattt 80
>RF00906;MIR1122;DQ145552.1/668-803 4573:Aegilops speltoides
Length = 136
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 44 ggatgtatttagatgtattttaattctagata 75
|||||||| ||||||||||||| |||||||||
Sbjct: 86 ggatgtatctagatgtattttagttctagata 55
>RF00906;MIR1122;FJ225151.1/115-1 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 10 actccctccgttcggaattacatgtcgtagaaatg 44
||||||||||||||||| ||| ||||| |||||||
Sbjct: 1 actccctccgttcggaaatacttgtcggagaaatg 35
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 46 atgtatttagatgtattttaattctagata 75
|||||| ||||||||||||| |||||||||
Sbjct: 79 atgtatctagatgtattttagttctagata 50
>RF00906;MIR1122;AY641411.1/11483-11599 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 117
Score = 46.1 bits (23), Expect = 1e-04
Identities = 63/75 (84%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 12 tccctccgttcggaattacatgtcgtagaaatggatgtatttagatgta-ttttaattct 70
|||||| || ||||||||| || || | |||||||||||| |||| | | ||||| ||||
Sbjct: 110 tccctctgtccggaattacttgccgcaaaaatggatgtatctagacgcatttttagttct 51
Query: 71 agatatatccatttc 85
||||| |||||||||
Sbjct: 50 agatacatccatttc 36
>RF00906;MIR1122;BT009083.1/864-988 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 44.1 bits (22), Expect = 4e-04
Identities = 65/78 (83%), Gaps = 1/78 (1%)
Strand = Plus / Minus
Query: 8 ctactccctccgttcggaattacatgtcgtagaaatggatgtatttagatgta-ttttaa 66
||||||||||| | ||||| ||| ||||| |||||| ||||||| || | ||| |||||
Sbjct: 122 ctactccctccatccggaaatacctgtcggagaaatagatgtatctaaacgtatttttag 63
Query: 67 ttctagatatatccattt 84
||||||||| || |||||
Sbjct: 62 ttctagatacattcattt 45
>RF00906;MIR1122;DJ023136.1/240-116 4513:Hordeum vulgare
Length = 125
Score = 44.1 bits (22), Expect = 4e-04
Identities = 64/78 (82%)
Strand = Plus / Minus
Query: 8 ctactccctccgttcggaattacatgtcgtagaaatggatgtatttagatgtattttaat 67
||||||||||||| | || ||| ||||| | ||||||||||| |||||| |||||| |
Sbjct: 122 ctactccctccgtcagaaaatacttgtcgaaagaatggatgtatctagatgcattttagt 63
Query: 68 tctagatatatccatttc 85
|||| ||| || ||||||
Sbjct: 62 tctaaatacattcatttc 45
