miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU399684.1/4485-4371 4550:Secale cereale (rye)
Length = 115
Score = 111 bits (56), Expect = 2e-24
Identities = 93/104 (89%), Gaps = 1/104 (0%)
Strand = Plus / Minus
Query: 13 ccctccgttcggaattacttgtcgcagaacatggatatatctagacctatatgggtccta 72
||||||||||||||||||||||| ||||| |||||| ||||||||| ||| | || |||
Sbjct: 107 ccctccgttcggaattacttgtctcagaa-atggatgtatctagacgtattttagttcta 49
Query: 73 gatacatccattttcgagacaagtaactccggacggagggagta 116
|||| ||||||||||||||||||||| |||| ||||||||||||
Sbjct: 48 gatagatccattttcgagacaagtaattccgaacggagggagta 5
Score = 75.8 bits (38), Expect = 1e-13
Identities = 92/106 (86%), Gaps = 3/106 (2%)
Strand = Plus / Plus
Query: 13 ccctccgttcggaattacttgtcgcagaacatggatatatctagacctata-tgggtcct 71
||||||||||||||||||||||| | ||| |||||| |||||||| ||| | | ||| |
Sbjct: 9 ccctccgttcggaattacttgtctc-gaaaatggatctatctagaactaaaatacgtc-t 66
Query: 72 agatacatccattttcgagacaagtaactccggacggagggagtac 117
|||||||||||||| ||||||||||| |||| |||||||||||||
Sbjct: 67 agatacatccatttctgagacaagtaattccgaacggagggagtac 112
>RF00906;MIR1122;AY146587.2/110938-111052 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 115
Score = 89.7 bits (45), Expect = 8e-18
Identities = 91/105 (86%), Gaps = 1/105 (0%)
Strand = Plus / Minus
Query: 13 ccctccgttcggaattacttgtcgcagaacatggatatatctagacctatatgggtccta 72
|||||||||| ||||||||||||| | || |||||| ||||||||| ||| | || |||
Sbjct: 107 ccctccgttctgaattacttgtcgaaaaa-atggatgtatctagacatattttagttcta 49
Query: 73 gatacatccattttcgagacaagtaactccggacggagggagtac 117
|||||||||||||| ||||||||||| || | |||||||||||||
Sbjct: 48 gatacatccatttttgagacaagtaattcggaacggagggagtac 4
Score = 50.1 bits (25), Expect = 7e-06
Identities = 88/105 (83%), Gaps = 3/105 (2%)
Strand = Plus / Plus
Query: 13 ccctccgttcggaattacttgtcgcagaacatggatatatctagacctata-tgggtcct 71
|||||||||| |||||||||||| || || |||||| |||||||| ||| | | ||| |
Sbjct: 9 ccctccgttccgaattacttgtctcaaaa-atggatgtatctagaactaaaatatgtc-t 66
Query: 72 agatacatccattttcgagacaagtaactccggacggagggagta 116
||||||||||||||| ||||||||| || | ||||||||||||
Sbjct: 67 agatacatccattttttcgacaagtaattcagaacggagggagta 111
>RF00906;MIR1122;AM932686.1/4713-4599 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 87.7 bits (44), Expect = 3e-17
Identities = 84/96 (87%), Gaps = 1/96 (1%)
Strand = Plus / Minus
Query: 13 ccctccgttcggaattacttgtcgcagaacatggatatatctagacctatatgggtccta 72
||||||||||||||||||||||||| ||| |||||| ||||||||| ||| | || |||
Sbjct: 107 ccctccgttcggaattacttgtcgc-gaaaatggatgtatctagacgtattttagttcta 49
Query: 73 gatacatccattttcgagacaagtaactccggacgg 108
|||||||| ||||||||||||| ||| |||| ||||
Sbjct: 48 gatacatctattttcgagacaaataattccgaacgg 13
Score = 69.9 bits (35), Expect = 7e-12
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 70 ctagatacatccattttcgagacaagtaactccggacggagggagta 116
||||||||||||||||||| ||||||||| |||| ||||||||||||
Sbjct: 65 ctagatacatccattttcgcgacaagtaattccgaacggagggagta 111
>RF00906;MIR1122;AY491681.1/88752-88866 4568:Triticum monococcum
Length = 115
Score = 75.8 bits (38), Expect = 1e-13
Identities = 87/102 (85%), Gaps = 1/102 (0%)
Strand = Plus / Minus
Query: 16 tccgttcggaattacttgtcgcagaacatggatatatctagacctatatgggtcctagat 75
|||||| ||||||||||||||||||| ||| || |||||||| ||| | || ||||||
Sbjct: 104 tccgtttggaattacttgtcgcagaa-atgaatgtatctagatgtattttagttctagat 46
Query: 76 acatccattttcgagacaagtaactccggacggagggagtac 117
|||||||| | |||||||||||| |||| | |||||||||||
Sbjct: 45 acatccatatccgagacaagtaattccgaatggagggagtac 4
>RF00906;MIR1122;AM932682.1/94335-94221 4565:Triticum aestivum
(bread wheat)
Length = 115
Score = 67.9 bits (34), Expect = 3e-11
Identities = 74/86 (86%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 13 ccctccgttcggaattacttgtcgcagaacatggatatatctagacctatatgggtccta 72
|||||||||||||||||||||||| |||| |||||| ||||||||| | | | || |||
Sbjct: 9 ccctccgttcggaattacttgtcgtagaa-atggatgtatctagacatttttcagttcta 67
Query: 73 gatacatccattttcgagacaagtaa 98
||||||||||||| | |||||||||
Sbjct: 68 gatacatccatttatgcgacaagtaa 93
Score = 44.1 bits (22), Expect = 4e-04
Identities = 38/42 (90%), Gaps = 1/42 (2%)
Strand = Plus / Minus
Query: 16 tccgttcggaattacttgtcgcagaacatggatatatctaga 57
||||||| ||||||||||||||| || |||||| ||||||||
Sbjct: 104 tccgttccgaattacttgtcgcataa-atggatgtatctaga 64
>RF00906;MIR1122;DQ889708.1/343-221 4565:Triticum aestivum (bread
wheat)
Length = 123
Score = 65.9 bits (33), Expect = 1e-10
Identities = 82/97 (84%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 20 ttcggaattacttgtcgcagaacatggatatatctagacctatatgggtcctagatacat 79
|||||||||||||||||||||| |||||| ||||||||| | | || ||||||||||
Sbjct: 24 ttcggaattacttgtcgcagaa-atggatgtatctagacgagttttagttctagatacat 82
Query: 80 ccattttcgagacaagtaactccggacggagggagta 116
||||||||| |||||||| |||| | |||||||||
Sbjct: 83 tcattttcgaaacaagtaattccgaatagagggagta 119
>RF00906;MIR1122;DQ245819.1/394-508 4577:Zea mays
Length = 115
Score = 60.0 bits (30), Expect = 7e-09
Identities = 85/102 (83%), Gaps = 1/102 (0%)
Strand = Plus / Minus
Query: 10 accccctccgttcggaattacttgtcgcagaacatggatatatctagacctatatgggtc 69
|||||||||||||||||||| ||||||| ||| || |||||||||||| ||| | ||
Sbjct: 110 accccctccgttcggaattaattgtcgc-gaaaatagatatatctagatgtattttagtt 52
Query: 70 ctagatacatccattttcgagacaagtaactccggacggagg 111
||| |||| ||||||| ||||||| |||| ||| |||||||
Sbjct: 51 ctaaatacgtccatttccgagacaggtaattccaaacggagg 10
>RF00906;MIR1122;CT009625.1/8885-8999 37682:Aegilops tauschii
Length = 115
Score = 54.0 bits (27), Expect = 4e-07
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 71 tagatacatccattttcgagacaagtaactccggacggagggagtac 117
|||||||||||||||| ||||||||| |||| |||||||||||||
Sbjct: 50 tagatacatccatttttatgacaagtaattccgaacggagggagtac 4
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 13 ccctccgttcggaattacttgtc 35
|||||||||||||||||||||||
Sbjct: 9 ccctccgttcggaattacttgtc 31
>RF00906;MIR1122;CT009585.1/3980-4094 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 52.0 bits (26), Expect = 2e-06
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 43 atggatatatctagacctatatgggtcctagatacatccattttcgagacaagtaactcc 102
||||||||||||||| ||| | || ||||| ||||||||||| ||||||||| ||
Sbjct: 78 atggatatatctagatgtattttagttctagacacatccattttgatgacaagtaattct 19
Query: 103 ggacggagggagta 116
||||||||||||||
Sbjct: 18 ggacggagggagta 5
>RF00906;MIR1122;EU282737.1/1022-902 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 121
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 79 tccattttcgagacaagtaactccggacggagggagta 116
|||||||| | ||||||||| |||||||||||||||||
Sbjct: 84 tccattttggtgacaagtaattccggacggagggagta 121
Score = 44.1 bits (22), Expect = 4e-04
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 71 tagatacatccattttcgagacaagtaactccggacggagggagta 116
||||| |||||||||| | ||||||| |||||||||||||||||
Sbjct: 50 tagatgcatccatttttatgtcaagtaattccggacggagggagta 5
>RF00906;MIR1122;AF548379.1/5968-6092 37682:Aegilops tauschii
Length = 125
Score = 52.0 bits (26), Expect = 2e-06
Identities = 63/74 (85%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 13 ccctccgttcggaattacttgtcgcagaacatggatatatctagacctatatgggtccta 72
|||||||| || ||||| |||||| |||| |||||| ||||||||| ||| | || |||
Sbjct: 9 ccctccgtccgaaattatttgtcggagaa-atggatgtatctagacgtattttagttcta 67
Query: 73 gatacatccatttt 86
||||||||||||||
Sbjct: 68 gatacatccatttt 81
>RF00906;MIR1122;AF459085.1/1867-1743 4513:Hordeum vulgare
Length = 125
Score = 50.1 bits (25), Expect = 7e-06
Identities = 62/73 (84%), Gaps = 1/73 (1%)
Strand = Plus / Minus
Query: 13 ccctccgttcggaattacttgtcgcagaacatggatatatctagacctatatgggtccta 72
|||||||| |||||||| ||||| |||| |||||| ||||||||| ||| | || |||
Sbjct: 117 ccctccgtccggaattatttgtcatagaa-atggatgtatctagacgtattttagttcta 59
Query: 73 gatacatccattt 85
|||||||||||||
Sbjct: 58 gatacatccattt 46
Score = 46.1 bits (23), Expect = 1e-04
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 70 ctagatacatccattttcgagacaagtaactccggacggagggagta 116
|||||||||||||||| ||||| ||| |||||||||||||||||
Sbjct: 75 ctagatacatccatttctatgacaaataattccggacggagggagta 121
>RF00906;MIR1122;AY235466.1/780-656 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 70 ctagatacatccattttcgagacaagtaactccggacggagggagtac 117
||||||||||||||| | |||||||| ||||||||||||||||||
Sbjct: 51 ctagatacatccattcccccgacaagtatttccggacggagggagtac 4
>RF00906;MIR1122;AY641411.1/11483-11599 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 117
Score = 48.1 bits (24), Expect = 3e-05
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 70 ctagatacatccattttcgagacaagtaactccggacggaggga 113
||||||||||||||||| | | ||||||| ||||||| ||||||
Sbjct: 67 ctagatacatccatttttgcggcaagtaattccggacagaggga 110
>RF00906;MIR1122;EU282564.1/350-463 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 114
Score = 48.1 bits (24), Expect = 3e-05
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 70 ctagatacatccattttcgagacaagtaactccggacggagggagtac 117
|||||||||||||||| || |||||||| || |||| ||||||||||
Sbjct: 51 ctagatacatccatttccgcgacaagtatttcgggacagagggagtac 4
>RF00906;MIR1122;AY951945.1/93583-93458 4568:Triticum monococcum
Length = 126
Score = 46.1 bits (23), Expect = 1e-04
Identities = 36/39 (92%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 13 ccctccgttcggaattacttgtcgcagaacatggatata 51
|||||||| ||||| |||||||||||||| |||||||||
Sbjct: 9 ccctccgtccggaaatacttgtcgcagaa-atggatata 46
>RF00906;MIR1122;EF081030.1/6132-5986 4572:Triticum urartu
Length = 147
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 13 ccctccgttcggaattacttgtcgcag 39
|||||||||| ||||||||||||||||
Sbjct: 139 ccctccgttccgaattacttgtcgcag 113
>RF00906;MIR1122;AY235464.1/714-838 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 70 ctagatacatccattttcgagacaagtaactccggacggagggagta 116
||||||||||||||| | |||||||| |||||||||||||||||
Sbjct: 75 ctagatacatccattcccccgacaagtatttccggacggagggagta 121
>RF00906;MIR1122;AF474373.1/52258-52134 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 90 gacaagtaactccggacggagggagta 116
||||||||| |||||||||||||||||
Sbjct: 95 gacaagtaattccggacggagggagta 121
>RF00906;MIR1122;AF022725.1/11631-11507 4513:Hordeum vulgare
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 90 gacaagtaactccggacggagggagta 116
||||||||| |||||||||||||||||
Sbjct: 31 gacaagtaattccggacggagggagta 5
>RF00906;MIR1122;DQ145552.1/668-803 4573:Aegilops speltoides
Length = 136
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 78 atccattttcgagacaagtaactccggacggagggagta 116
||||||||| | |||||||| |||||||||||||||||
Sbjct: 94 atccattttggtgacaagtatttccggacggagggagta 132
>RF00906;MIR1122;BT009295.1/1923-1809 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 13 ccctccgttcggaattacttgtcgca 38
|||||||||| |||||||||||||||
Sbjct: 107 ccctccgttccgaattacttgtcgca 82
>RF00906;MIR1122;AY013754.1/1932-2046 37682:Aegilops tauschii
Length = 115
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 13 ccctccgttcggaattacttgtcgca 38
|||||||||| |||||||||||||||
Sbjct: 107 ccctccgttccgaattacttgtcgca 82
