miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY491681.1/88752-88866 4568:Triticum monococcum
Length = 115
Score = 167 bits (84), Expect = 4e-41
Identities = 102/108 (94%)
Strand = Plus / Minus
Query: 8 ctactccctccgttcggaattacttgtcgcagaaatggatgtatctagatgtattttagt 67
||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 112 ctactccatccgtttggaattacttgtcgcagaaatgaatgtatctagatgtattttagt 53
Query: 68 tctagatacattcatatccgagacaagtaattctgaacggagggagta 115
||||||||||| ||||||||||||||||||||| ||| ||||||||||
Sbjct: 52 tctagatacatccatatccgagacaagtaattccgaatggagggagta 5
Score = 77.8 bits (39), Expect = 3e-14
Identities = 90/107 (84%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtcgcagaaatggatgtatctagatgtattttagtt 68
|||||||||| |||||||||||||||| | || ||||||||||||||| || || |
Sbjct: 5 tactccctccattcggaattacttgtctcggatatggatgtatctagaactaaaatacat 64
Query: 69 ctagatacattcatatccgagacaagtaattctgaacggagggagta 115
|||||||||||||| || | |||||||||||| |||||| ||||||
Sbjct: 65 ctagatacattcatttctgcgacaagtaattccaaacggatggagta 111
>RF00906;MIR1122;EU399684.1/4485-4371 4550:Secale cereale (rye)
Length = 115
Score = 157 bits (79), Expect = 4e-38
Identities = 100/107 (93%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtcgcagaaatggatgtatctagatgtattttagtt 68
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 111 tactccctccgttcggaattacttgtctcagaaatggatgtatctagacgtattttagtt 52
Query: 69 ctagatacattcatatccgagacaagtaattctgaacggagggagta 115
||||||| || ||| | ||||||||||||||| ||||||||||||||
Sbjct: 51 ctagatagatccattttcgagacaagtaattccgaacggagggagta 5
Score = 99.6 bits (50), Expect = 8e-21
Identities = 95/110 (86%)
Strand = Plus / Plus
Query: 6 aactactccctccgttcggaattacttgtcgcagaaatggatgtatctagatgtatttta 65
|||||||||||||||||||||||||||||| | |||||||| |||||||| || ||
Sbjct: 2 aactactccctccgttcggaattacttgtctcgaaaatggatctatctagaactaaaata 61
Query: 66 gttctagatacattcatatccgagacaagtaattctgaacggagggagta 115
||||||||||| ||| || |||||||||||||| ||||||||||||||
Sbjct: 62 cgtctagatacatccatttctgagacaagtaattccgaacggagggagta 111
>RF00906;MIR1122;AY146587.2/110938-111052 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 115
Score = 133 bits (67), Expect = 6e-31
Identities = 97/107 (90%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtcgcagaaatggatgtatctagatgtattttagtt 68
|||||||||||||| ||||||||||||| | ||||||||||||||||| ||||||||||
Sbjct: 111 tactccctccgttctgaattacttgtcgaaaaaatggatgtatctagacatattttagtt 52
Query: 69 ctagatacattcatatccgagacaagtaattctgaacggagggagta 115
|||||||||| ||| | |||||||||||||| ||||||||||||||
Sbjct: 51 ctagatacatccatttttgagacaagtaattcggaacggagggagta 5
Score = 77.8 bits (39), Expect = 3e-14
Identities = 90/107 (84%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtcgcagaaatggatgtatctagatgtattttagtt 68
|||||||||||||| |||||||||||| || ||||||||||||||||| || || |
Sbjct: 5 tactccctccgttccgaattacttgtctcaaaaatggatgtatctagaactaaaatatgt 64
Query: 69 ctagatacattcatatccgagacaagtaattctgaacggagggagta 115
|||||||||| ||| | |||||||||||| ||||||||||||||
Sbjct: 65 ctagatacatccattttttcgacaagtaattcagaacggagggagta 111
>RF00906;MIR1122;EU117148.1/1866-1980 4571:Triticum turgidum
Length = 115
Score = 133 bits (67), Expect = 6e-31
Identities = 97/107 (90%)
Strand = Plus / Plus
Query: 7 actactccctccgttcggaattacttgtcgcagaaatggatgtatctagatgtattttag 66
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 3 actactccctccgttctgaattactcgtcgcagaaatggatgtatctagatgtattttag 62
Query: 67 ttctagatacattcatatccgagacaagtaattctgaacggagggag 113
|| |||||| || ||| || ||||| ||||||| ||||||||||||
Sbjct: 63 ttttagatatatccatttctgagacgagtaatttggaacggagggag 109
Score = 58.0 bits (29), Expect = 3e-08
Identities = 86/105 (81%)
Strand = Plus / Minus
Query: 11 ctccctccgttcggaattacttgtcgcagaaatggatgtatctagatgtattttagttct 70
|||||||||||| ||||||| ||| ||||||||||| |||||| | || || |||
Sbjct: 109 ctccctccgttccaaattactcgtctcagaaatggatatatctaaaactaaaatacatct 50
Query: 71 agatacattcatatccgagacaagtaattctgaacggagggagta 115
|||||||| ||| || | ||| |||||||| ||||||||||||||
Sbjct: 49 agatacatccatttctgcgacgagtaattcagaacggagggagta 5
>RF00906;MIR1122;AM932686.1/4713-4599 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 125 bits (63), Expect = 1e-28
Identities = 90/99 (90%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtcgcagaaatggatgtatctagatgtattttagtt 68
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 111 tactccctccgttcggaattacttgtcgcgaaaatggatgtatctagacgtattttagtt 52
Query: 69 ctagatacattcatatccgagacaagtaattctgaacgg 107
|||||||||| || | |||||||| |||||| ||||||
Sbjct: 51 ctagatacatctattttcgagacaaataattccgaacgg 13
Score = 73.8 bits (37), Expect = 5e-13
Identities = 94/113 (83%)
Strand = Plus / Plus
Query: 6 aactactccctccgttcggaattacttgtcgcagaaatggatgtatctagatgtatttta 65
||||||| || ||||||||||||| ||||| | |||| |||||||||||| || ||
Sbjct: 2 aactacttccaccgttcggaattatttgtctcgaaaatagatgtatctagaactaaaata 61
Query: 66 gttctagatacattcatatccgagacaagtaattctgaacggagggagtatat 118
||||||||||| ||| | || |||||||||||| |||||||||||||||||
Sbjct: 62 cgtctagatacatccattttcgcgacaagtaattccgaacggagggagtatat 114
>RF00906;MIR1122;DQ889708.1/343-221 4565:Triticum aestivum (bread
wheat)
Length = 123
Score = 121 bits (61), Expect = 2e-27
Identities = 88/97 (90%)
Strand = Plus / Plus
Query: 20 ttcggaattacttgtcgcagaaatggatgtatctagatgtattttagttctagatacatt 79
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 24 ttcggaattacttgtcgcagaaatggatgtatctagacgagttttagttctagatacatt 83
Query: 80 catatccgagacaagtaattctgaacggagggagtat 116
||| | ||| ||||||||||| ||| ||||||||||
Sbjct: 84 cattttcgaaacaagtaattccgaatagagggagtat 120
>RF00906;MIR1122;AY013754.1/1932-2046 37682:Aegilops tauschii
Length = 115
Score = 109 bits (55), Expect = 9e-24
Identities = 82/91 (90%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtcgcagaaatggatgtatctagatgtattttagtt 68
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 111 tactccctccgttccgaattacttgtcgcacgtatggatgtatctagatgtattttagtt 52
Query: 69 ctagatacattcatatccgagacaagtaatt 99
|||||||||| ||| || | ||| |||||||
Sbjct: 51 ctagatacatccatttcagcgacgagtaatt 21
Score = 61.9 bits (31), Expect = 2e-09
Identities = 76/91 (83%)
Strand = Plus / Plus
Query: 25 aattacttgtcgcagaaatggatgtatctagatgtattttagttctagatacattcatat 84
||||||| ||||| |||||||||||||||||| || || ||||||||||| ||||
Sbjct: 21 aattactcgtcgctgaaatggatgtatctagaactaaaatacatctagatacatccatac 80
Query: 85 ccgagacaagtaattctgaacggagggagta 115
| |||||||||||| ||||||||||||||
Sbjct: 81 gtgcgacaagtaattcggaacggagggagta 111
>RF00906;MIR1122;AM932682.1/94335-94221 4565:Triticum aestivum
(bread wheat)
Length = 115
Score = 105 bits (53), Expect = 1e-22
Identities = 86/97 (88%)
Strand = Plus / Plus
Query: 12 tccctccgttcggaattacttgtcgcagaaatggatgtatctagatgtattttagttcta 71
||||||||||||||||||||||||| ||||||||||||||||||| | ||| |||||||
Sbjct: 8 tccctccgttcggaattacttgtcgtagaaatggatgtatctagacatttttcagttcta 67
Query: 72 gatacattcatatccgagacaagtaattctgaacgga 108
||||||| ||| | | |||||||||||| |||||||
Sbjct: 68 gatacatccatttatgcgacaagtaattcggaacgga 104
Score = 65.9 bits (33), Expect = 1e-10
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 16 tccgttcggaattacttgtcgcagaaatggatgtatctaga 56
||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 104 tccgttccgaattacttgtcgcataaatggatgtatctaga 64
>RF00906;MIR1122;EF540321.1/236564-236678 4571:Triticum turgidum
Length = 115
Score = 103 bits (52), Expect = 5e-22
Identities = 91/104 (87%)
Strand = Plus / Plus
Query: 12 tccctccgttcggaattacttgtcgcagaaatggatgtatctagatgtattttagttcta 71
||||||||||| |||||||| ||| | ||||||||||||||||||||||||||||| ||
Sbjct: 8 tccctccgttccgaattactcgtccaataaatggatgtatctagatgtattttagttata 67
Query: 72 gatacattcatatccgagacaagtaattctgaacggagggagta 115
||||||| ||| || | ||| ||||||| ||||||||||||||
Sbjct: 68 gatacatccatttctgcgacgagtaatttggaacggagggagta 111
Score = 67.9 bits (34), Expect = 3e-11
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtcgcagaaatggatgtatcta 54
|||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 111 tactccctccgttccaaattactcgtcgcagaaatggatgtatcta 66
>RF00906;MIR1122;CT009625.1/8885-8999 37682:Aegilops tauschii
Length = 115
Score = 103 bits (52), Expect = 5e-22
Identities = 94/108 (87%)
Strand = Plus / Minus
Query: 8 ctactccctccgttcggaattacttgtcgcagaaatggatgtatctagatgtattttagt 67
|||||||||| ||||| ||||||| ||| ||||||| ||||||||||||||||||||||
Sbjct: 112 ctactccctctgttcgaaattactcgtccaagaaatgaatgtatctagatgtattttagt 53
Query: 68 tctagatacattcatatccgagacaagtaattctgaacggagggagta 115
| ||||||||| ||| | |||||||||||| ||||||||||||||
Sbjct: 52 tatagatacatccatttttatgacaagtaattccgaacggagggagta 5
Score = 67.9 bits (34), Expect = 3e-11
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtcgcagaaatggatgtatcta 54
||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 5 tactccctccgttcggaattacttgtcataaaaatggatgtatcta 50
>RF00906;MIR1122;X13580.1/135-24 4565:Triticum aestivum (bread
wheat)
Length = 112
Score = 101 bits (51), Expect = 2e-21
Identities = 81/91 (89%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtcgcagaaatggatgtatctagatgtattttagtt 68
||||||||||||| |||||| | ||||||||||| ||||||||||| ||||||||||||
Sbjct: 5 tactccctccgtttcgaattattcgtcgcagaaatagatgtatctagttgtattttagtt 64
Query: 69 ctagatacattcatatccgagacaagtaatt 99
|||||||||||||| || | ||| |||||||
Sbjct: 65 ctagatacattcatttctgcgacgagtaatt 95
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 25 aattacttgtcgcagaaatggatgtatctaga 56
||||||| |||||||||||| |||||||||||
Sbjct: 95 aattactcgtcgcagaaatgaatgtatctaga 64
>RF00906;MIR1122;AB298184.1/15044-14931 4565:Triticum aestivum
(bread wheat)
Length = 114
Score = 101 bits (51), Expect = 2e-21
Identities = 91/103 (88%), Gaps = 1/103 (0%)
Strand = Plus / Plus
Query: 13 ccctccgttcggaattacttgtcgcagaaatggatgtatctagatgtattttagttctag 72
|||||||||| || ||||||||| || | |||||||||||||||||||||||||||||||
Sbjct: 9 ccctccgttccga-ttacttgtctcacatatggatgtatctagatgtattttagttctag 67
Query: 73 atacattcatatccgagacaagtaattctgaacggagggagta 115
|||||| ||| || | ||| ||||||| ||||||||||||||
Sbjct: 68 atacatccatttcagcgacgagtaatttggaacggagggagta 110
Score = 71.9 bits (36), Expect = 2e-12
Identities = 88/104 (84%), Gaps = 1/104 (0%)
Strand = Plus / Minus
Query: 8 ctactccctccgttcggaattacttgtcgcagaaatggatgtatctagatgtattttagt 67
||||||||||||||| ||||||| ||||| |||||||||||||||||| || ||
Sbjct: 111 ctactccctccgttccaaattactcgtcgctgaaatggatgtatctagaactaaaataca 52
Query: 68 tctagatacattcatatccgagacaagtaattctgaacggaggg 111
||||||||||| ||||| ||||||||||| || ||||||||||
Sbjct: 51 tctagatacatccatatgtgagacaagtaa-tcggaacggaggg 9
>RF00906;MIR1122;DQ245819.1/394-508 4577:Zea mays
Length = 115
Score = 99.6 bits (50), Expect = 8e-21
Identities = 86/98 (87%)
Strand = Plus / Minus
Query: 13 ccctccgttcggaattacttgtcgcagaaatggatgtatctagatgtattttagttctag 72
||||||||||||||||| ||||||| |||| ||| |||||||||||||||||||||||
Sbjct: 107 ccctccgttcggaattaattgtcgcgaaaatagatatatctagatgtattttagttctaa 48
Query: 73 atacattcatatccgagacaagtaattctgaacggagg 110
|||| | ||| ||||||||| ||||||| ||||||||
Sbjct: 47 atacgtccatttccgagacaggtaattccaaacggagg 10
>RF00906;MIR1122;CT009585.1/3980-4094 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 99.6 bits (50), Expect = 8e-21
Identities = 95/110 (86%)
Strand = Plus / Minus
Query: 7 actactccctccgttcggaattacttgtcgcagaaatggatgtatctagatgtattttag 66
|||||||||||||| || || |||||||| ||||||||| ||||||||||||||||||
Sbjct: 113 actactccctccgtccgaaaatacttgtcattgaaatggatatatctagatgtattttag 54
Query: 67 ttctagatacattcatatccgagacaagtaattctgaacggagggagtat 116
||||||| |||| ||| | |||||||||||||| |||||||||||||
Sbjct: 53 ttctagacacatccattttgatgacaagtaattctggacggagggagtat 4
>RF00906;MIR1122;AY235466.1/780-656 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 99.6 bits (50), Expect = 8e-21
Identities = 65/70 (92%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtcgcagaaatggatgtatctagatgtattttagtt 68
|||||||||||| ||||| ||||||||| | ||||||||||||||||||||||||||||
Sbjct: 5 tactccctccgtccggaaatacttgtcgggggaatggatgtatctagatgtattttagtt 64
Query: 69 ctagatacat 78
||||||||||
Sbjct: 65 ctagatacat 74
>RF00906;MIR1122;AY235464.1/714-838 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 99.6 bits (50), Expect = 8e-21
Identities = 65/70 (92%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtcgcagaaatggatgtatctagatgtattttagtt 68
|||||||||||| ||||| ||||||||| | ||||||||||||||||||||||||||||
Sbjct: 121 tactccctccgtccggaaatacttgtcgggggaatggatgtatctagatgtattttagtt 62
Query: 69 ctagatacat 78
||||||||||
Sbjct: 61 ctagatacat 52
>RF00906;MIR1122;AF459085.1/1867-1743 4513:Hordeum vulgare
Length = 125
Score = 99.6 bits (50), Expect = 8e-21
Identities = 65/70 (92%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtcgcagaaatggatgtatctagatgtattttagtt 68
|||||||||||| |||||||| ||||| ||||||||||||||||||| |||||||||||
Sbjct: 121 tactccctccgtccggaattatttgtcatagaaatggatgtatctagacgtattttagtt 62
Query: 69 ctagatacat 78
||||||||||
Sbjct: 61 ctagatacat 52
>RF00906;MIR1122;AF548379.1/5968-6092 37682:Aegilops tauschii
Length = 125
Score = 99.6 bits (50), Expect = 8e-21
Identities = 65/70 (92%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtcgcagaaatggatgtatctagatgtattttagtt 68
|||||||||||| || ||||| |||||| ||||||||||||||||||| |||||||||||
Sbjct: 5 tactccctccgtccgaaattatttgtcggagaaatggatgtatctagacgtattttagtt 64
Query: 69 ctagatacat 78
||||||||||
Sbjct: 65 ctagatacat 74
Score = 54.0 bits (27), Expect = 4e-07
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtcgcagaaatggat 47
|||||||||||| ||||| ||||||| ||||||||||||
Sbjct: 121 tactccctccgtccggaactacttgttgcagaaatggat 83
>RF00906;MIR1122;BT009295.1/1923-1809 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 95.6 bits (48), Expect = 1e-19
Identities = 66/72 (91%)
Strand = Plus / Minus
Query: 7 actactccctccgttcggaattacttgtcgcagaaatggatgtatctagatgtattttag 66
||||| |||||||||| ||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 113 actacgccctccgttccgaattacttgtcgcacttatggatgtatcaagatgtattttag 54
Query: 67 ttctagatacat 78
||||||||||||
Sbjct: 53 ttctagatacat 42
>RF00906;MIR1122;EU282564.1/350-463 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 114
Score = 95.6 bits (48), Expect = 1e-19
Identities = 81/92 (88%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtcgcagaaatggatgtatctagatgtattttagtt 68
||||||||| || | ||| |||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 5 tactccctctgtcccgaaatacttgtcgcggaaatggatgtatctagatgtatttcagtt 64
Query: 69 ctagatacattcatatccgagacaagtaattc 100
|||||||||| ||| || ||||||||||||
Sbjct: 65 ctagatacatccatttctacgacaagtaattc 96
Score = 60.0 bits (30), Expect = 7e-09
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 23 ggaattacttgtcgcagaaatggatgtatctaga 56
|||||||||||||| |||||||||||||||||||
Sbjct: 97 ggaattacttgtcgtagaaatggatgtatctaga 64
>RF00906;MIR1122;EU282650.1/1397-1273 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 95.6 bits (48), Expect = 1e-19
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 7 actactccctccgttcggaattacttgtcgcagaaatggatgtatctagatgtattttag 66
||||||||| |||| ||||| |||||||| || ||||||||||||||||||||||||||
Sbjct: 3 actactcccgccgtccggaaatacttgtcataggaatggatgtatctagatgtattttag 62
Query: 67 ttctagatacat 78
||||||||||||
Sbjct: 63 ttctagatacat 74
>RF00906;MIR1122;AF325196.1/33744-33620 4565:Triticum aestivum
(bread wheat)
Length = 125
Score = 91.7 bits (46), Expect = 2e-18
Identities = 64/70 (91%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtcgcagaaatggatgtatctagatgtattttagtt 68
|||||||||||| ||||| ||||||||| ||||||| || ||||||||||||||||| ||
Sbjct: 121 tactccctccgtccggaaatacttgtcggagaaatgaatctatctagatgtattttaatt 62
Query: 69 ctagatacat 78
||||||||||
Sbjct: 61 ctagatacat 52
Score = 58.0 bits (29), Expect = 3e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 7 actactccctccgttcggaattacttgtcgcagaaatggat 47
||||||||||| || ||||||||||||||||| ||||||||
Sbjct: 3 actactccctctgtccggaattacttgtcgcataaatggat 43
>RF00906;MIR1122;BT009606.1/1324-1200 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 85.7 bits (43), Expect = 1e-16
Identities = 64/71 (90%)
Strand = Plus / Minus
Query: 8 ctactccctccgttcggaattacttgtcgcagaaatggatgtatctagatgtattttagt 67
||||||||||||||| |||||||| ||| ||||||| |||||||||||||||||||| |
Sbjct: 122 ctactccctccgttcagaattactcgtccaagaaatgaatgtatctagatgtattttaat 63
Query: 68 tctagatacat 78
| |||||||||
Sbjct: 62 tgtagatacat 52
Score = 56.0 bits (28), Expect = 1e-07
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 68 tctagatacattcatatccgagacaagtaattctgaacggagggagta 115
||||||||||||||| || ||| |||||||||||||||||||||||
Sbjct: 74 tctagatacattcatttcttggacgagtaattctgaacggagggagta 121
>RF00906;MIR1122;EF028786.1/1091-968 4565:Triticum aestivum (bread
wheat)
Length = 124
Score = 83.8 bits (42), Expect = 5e-16
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtcgcagaaatggatgtatctagatgtattttagtt 68
|||||||||||| || || |||||||| |||||| |||||||||||| |||||||||||
Sbjct: 5 tactccctccgtccgaaaatacttgtctgagaaattgatgtatctagacgtattttagtt 64
Query: 69 ctagatacattcat 82
||| ||||||||||
Sbjct: 65 ctaaatacattcat 78
>RF00906;MIR1122;DJ023136.1/240-116 4513:Hordeum vulgare
Length = 125
Score = 81.8 bits (41), Expect = 2e-15
Identities = 68/77 (88%)
Strand = Plus / Minus
Query: 6 aactactccctccgttcggaattacttgtcgcagaaatggatgtatctagatgtatttta 65
||||||||||||||| | || ||||||||| | |||||||||||||||||| ||||||
Sbjct: 124 aactactccctccgtcagaaaatacttgtcgaaagaatggatgtatctagatgcatttta 65
Query: 66 gttctagatacattcat 82
|||||| ||||||||||
Sbjct: 64 gttctaaatacattcat 48
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 14 cctccgttcggaattacttgtcgcagaaatggat 47
||||||| ||||||||||| ||||| ||||||||
Sbjct: 10 cctccgtccggaattacttatcgcaaaaatggat 43
>RF00906;MIR1122;AY951945.1/36609-36485 4568:Triticum monococcum
Length = 125
Score = 79.8 bits (40), Expect = 8e-15
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 7 actactccctccgttcggaattacttgtcgcagaaatggatgtatctagatgtattttag 66
||||||||||| || || || |||||||| || |||| ||||||||||||||||||||
Sbjct: 3 actactccctctgtccgaaaatacttgtcattgagatgggtgtatctagatgtattttag 62
Query: 67 ttctagatacattcat 82
||||||||||||||||
Sbjct: 63 ttctagatacattcat 78
>RF00906;MIR1122;EF081030.1/6132-5986 4572:Triticum urartu
Length = 147
Score = 77.8 bits (39), Expect = 3e-14
Identities = 78/91 (85%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtcgcagaaatggatgtatctagatgtattttagtt 68
|||||||| ||||| |||||||||||| |||| ||| || ||| || |||||||||||||
Sbjct: 5 tactcccttcgttccgaattacttgtcacagatatgaatatatataaatgtattttagtt 64
Query: 69 ctagatacattcatatccgagacaagtaatt 99
||||||| |||||| || | ||| |||||||
Sbjct: 65 ctagatatattcatttctgcgacgagtaatt 95
Score = 65.9 bits (33), Expect = 1e-10
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtcgcagaaatggatgtatct 53
|||||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 143 tactccctccgttccgaattacttgtcgcaggtatggatgtatct 99
Score = 50.1 bits (25), Expect = 7e-06
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 71 agatacattcatatccgagacaagtaattctgaacggagggagta 115
|||||||| |||| | | |||||||||||| ||||||||||||||
Sbjct: 99 agatacatccatacctgcgacaagtaattcggaacggagggagta 143
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 77 attcatatccgagacaagtaattctgaacggagggagta 115
||||||||| | |||||||||||| ||||| ||||||||
Sbjct: 43 attcatatctgtgacaagtaattcggaacgaagggagta 5
>RF00906;MIR1122;AF474373.1/52258-52134 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 77.8 bits (39), Expect = 3e-14
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtcgcagaaatggatgtatctagatgtattttagtt 68
||||||||| || ||||| || ||||| || ||||||||||||||||||||||||||||
Sbjct: 5 tactccctctgtccggaaatatttgtcataggaatggatgtatctagatgtattttagtt 64
Query: 69 ctagata 75
|||||||
Sbjct: 65 ctagata 71
Score = 54.0 bits (27), Expect = 4e-07
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtcgcagaaatggat 47
|||||||||||| |||||||||||||| || ||||||||
Sbjct: 121 tactccctccgtccggaattacttgtcacacaaatggat 83
>RF00906;MIR1122;AY643843.1/31186-31309 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 77.8 bits (39), Expect = 3e-14
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 8 ctactccctccgttcggaattacttgtcgcagaaatggatgtatctagatgtattttagt 67
||||||||||||||||||| |||||||| | ||||| ||||||||||| |||||||||
Sbjct: 121 ctactccctccgttcggaaatacttgtcctaaaaatgaatgtatctagacttattttagt 62
Query: 68 tctagatacat 78
| |||||||||
Sbjct: 61 tatagatacat 51
>RF00906;MIR1122;AY368673.1/196592-196716 4571:Triticum turgidum
Length = 125
Score = 75.8 bits (38), Expect = 1e-13
Identities = 62/70 (88%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtcgcagaaatggatgtatctagatgtattttagtt 68
||||||||| || ||||| |||||||| || |||||||||| ||||| |||||||||||
Sbjct: 121 tactccctctgtccggaaatacttgtcagaggaatggatgtacctagacgtattttagtt 62
Query: 69 ctagatacat 78
||||||||||
Sbjct: 61 ctagatacat 52
>RF00906;MIR1122;L41869.1/3010-3134 4513:Hordeum vulgare
Length = 125
Score = 75.8 bits (38), Expect = 1e-13
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtcgcagaaatggatgtatctagatgtattttagtt 68
|||||||| ||| ||||| |||||||| | ||||||||||||||||||||||||||||
Sbjct: 5 tactcccttcgtccggaaatacttgtccaaagaatggatgtatctagatgtattttagtt 64
Query: 69 ctagatacat 78
|||||||||
Sbjct: 65 atagatacat 74
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtcgcagaaatg 44
|||||||||| | ||||||||||||||||| |||||
Sbjct: 121 tactccctccatgcggaattacttgtcgcaaaaatg 86
>RF00906;MIR1122;EU159422.1/10160-10283 37682:Aegilops tauschii
Length = 124
Score = 75.8 bits (38), Expect = 1e-13
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtcgcagaaatggatgtatctagatgtattttagtt 68
|||| ||| |||||||| |||||||| ||||||||||||||||||| |||||||| ||
Sbjct: 5 tactgcctacgttcggatatacttgtcagagaaatggatgtatctagacgtattttactt 64
Query: 69 ctagatacat 78
||||||||||
Sbjct: 65 ctagatacat 74
>RF00906;MIR1122;BT009083.1/864-988 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 73.8 bits (37), Expect = 5e-13
Identities = 68/77 (88%), Gaps = 1/77 (1%)
Strand = Plus / Minus
Query: 7 actactccctccgttcggaattacttgtcgcagaaatggatgtatctagatgta-tttta 65
|||||||||||| | ||||| ||| ||||| |||||| |||||||||| | ||| |||||
Sbjct: 123 actactccctccatccggaaatacctgtcggagaaatagatgtatctaaacgtattttta 64
Query: 66 gttctagatacattcat 82
|||||||||||||||||
Sbjct: 63 gttctagatacattcat 47
>RF00906;MIR1122;AY641411.1/11483-11599 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 117
Score = 71.9 bits (36), Expect = 2e-12
Identities = 61/68 (89%), Gaps = 1/68 (1%)
Strand = Plus / Minus
Query: 12 tccctccgttcggaattacttgtcgcagaaatggatgtatctagatgta-ttttagttct 70
|||||| || |||||||||||| |||| ||||||||||||||||| | | ||||||||||
Sbjct: 110 tccctctgtccggaattacttgccgcaaaaatggatgtatctagacgcatttttagttct 51
Query: 71 agatacat 78
||||||||
Sbjct: 50 agatacat 43
>RF00906;MIR1122;DQ145552.1/668-803 4573:Aegilops speltoides
Length = 136
Score = 71.9 bits (36), Expect = 2e-12
Identities = 36/36 (100%)
Strand = Plus / Minus
Query: 44 ggatgtatctagatgtattttagttctagatacatt 79
||||||||||||||||||||||||||||||||||||
Sbjct: 86 ggatgtatctagatgtattttagttctagatacatt 51
>RF00906;MIR1122;AY951945.1/93583-93458 4568:Triticum monococcum
Length = 126
Score = 69.9 bits (35), Expect = 7e-12
Identities = 63/71 (88%), Gaps = 1/71 (1%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtcgcagaaatggatgtatcta-gatgtattttagt 67
|||||||||||| || || |||||||| || |||||||||||| | |||||||||||||
Sbjct: 122 tactccctccgtccgaaaatacttgtccgaggaatggatgtatcaaagatgtattttagt 63
Query: 68 tctagatacat 78
|||||||||||
Sbjct: 62 tctagatacat 52
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtcgcagaaatggat 47
|||||||||||| ||||| ||||||||||||||||||||
Sbjct: 5 tactccctccgtccggaaatacttgtcgcagaaatggat 43
>RF00906;MIR1122;AB298185.1/18759-18893 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 44 ggatgtatctagatgtattttagttctagataca 77
||||||||||||||||||||||||||||||||||
Sbjct: 86 ggatgtatctagatgtattttagttctagataca 53
>RF00906;MIR1122;FJ225151.1/115-1 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 46 atgtatctagatgtattttagttctagatacatt 79
||||||||||||||||||||||||||||||||||
Sbjct: 79 atgtatctagatgtattttagttctagatacatt 46
Score = 54.0 bits (27), Expect = 4e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 10 actccctccgttcggaattacttgtcgcagaaatg 44
||||||||||||||||| ||||||||| |||||||
Sbjct: 1 actccctccgttcggaaatacttgtcggagaaatg 35
>RF00906;MIR1122;EU096089.1/6299-6422 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 124
Score = 67.9 bits (34), Expect = 3e-11
Identities = 61/70 (87%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtcgcagaaatggatgtatctagatgtattttagtt 68
|||||||||||| ||||| |||||||| ||| ||| ||||||||||| ||||||||||
Sbjct: 120 tactccctccgtccggaaatacttgtcctagagatgaatgtatctagacttattttagtt 61
Query: 69 ctagatacat 78
|||||||||
Sbjct: 60 atagatacat 51
>RF00906;MIR1122;EU282737.1/1022-902 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 121
Score = 67.9 bits (34), Expect = 3e-11
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtcgcagaaatggatgtatctagatgtattttagtt 68
|||||||||||| |||||||||||| | | ||||||||| ||||| | ||||||||||
Sbjct: 5 tactccctccgtccggaattacttgacataaaaatggatgcatctaaacatattttagtt 64
Query: 69 ctagatacattcat 82
||| ||||||||||
Sbjct: 65 ctaaatacattcat 78
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtc 35
|||||||||||| ||||||||||||||
Sbjct: 121 tactccctccgtccggaattacttgtc 95
>RF00906;MIR1122;EU812563.1/59152-59276 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 67.9 bits (34), Expect = 3e-11
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 41 aatggatgtatctagatgtattttagttctagatacattcat 82
|||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 89 aatgtatgtatctagatatattttagttctagatacattcat 48
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 6 aactactccctccgttcggaattacttgtcgcagaaat 43
||||||||| ||||| ||||||||||||||||| ||||
Sbjct: 2 aactactccgtccgtccggaattacttgtcgcacaaat 39
>RF00906;MIR1122;AF532104.1/14817-14951 37682:Aegilops tauschii
Length = 135
Score = 63.9 bits (32), Expect = 5e-10
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 45 gatgtatctagatgtattttagttctagatacattc 80
||||||||||||||||||||| ||||||||||||||
Sbjct: 85 gatgtatctagatgtattttaattctagatacattc 50
>RF00906;MIR1122;DQ904440.1/75385-75530 52163:Triticum monococcum
subsp. aegilopoides
Length = 146
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 44 ggatgtatctagatgtattttagttctagatacat 78
|||||||||||||||||||||||||||| ||||||
Sbjct: 61 ggatgtatctagatgtattttagttctacatacat 95
>RF00906;MIR1122;AB238931.1/2749-2883 4568:Triticum monococcum
Length = 135
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 44 ggatgtatctagatgtattttagttctagatacat 78
|||||||||||||||||||||||||||| ||||||
Sbjct: 86 ggatgtatctagatgtattttagttctaaatacat 52
>RF00906;MIR1122;AY146587.2/148630-148744 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 115
Score = 60.0 bits (30), Expect = 7e-09
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtcgcagaaatggatgtatctagatgtattttagtt 68
||||| ||||||| |||||| ||||| || ||| |||||||||||| ||||||| ||
Sbjct: 111 tactctctccgtttcgaattatttgtcataggtatgaatgtatctagatttattttaatt 52
Query: 69 ctagatacattcat 82
||||||||||||||
Sbjct: 51 ctagatacattcat 38
Score = 46.1 bits (23), Expect = 1e-04
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 6 aactactccctccgttcggaattacttgtcgcagaaatggatgtatctaga 56
||||||| ||| ||||| ||||||| || ||||||||| |||||||||||
Sbjct: 2 aactacttccttcgttctaaattactcgttgcagaaatgaatgtatctaga 52
>RF00906;MIR1122;AY533103.1/332-199 4565:Triticum aestivum (bread
wheat)
Length = 134
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 44 ggatgtatctagatgtattttagttctagata 75
|||||||| |||||||||||||||||||||||
Sbjct: 49 ggatgtatttagatgtattttagttctagata 80
>RF00906;MIR1122;AK250831.1/1328-1188 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 141
Score = 56.0 bits (28), Expect = 1e-07
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtcgcagaaatggatgtatctagatgtattttagtt 68
||||||||| |||| || |||||||| |||||| ||||||||||||| ||||||||||
Sbjct: 5 tactccctctgttcataaatacttgtcctagaaatagatgtatctagatttattttagtt 64
>RF00906;MIR1122;AF521177.1/27342-27466 4513:Hordeum vulgare
Length = 125
Score = 56.0 bits (28), Expect = 1e-07
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtcgcagaaatggatgtatctagatgtattttagtt 68
|||| ||||||||||||| ||||||| ||| ||| |||||||||||| ||||||| ||
Sbjct: 5 tactacctccgttcggaaatacttgttttagagatgaatgtatctagatttattttaatt 64
Query: 69 ctagatac 76
|||||||
Sbjct: 65 atagatac 72
>RF00906;MIR1122;AY963808.1/10854-10720 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 54.0 bits (27), Expect = 4e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 44 ggatgtatctagatgtattttagttctagatacat 78
||||||||||||| ||||||||||||||||||||
Sbjct: 50 ggatgtatctagacatattttagttctagatacat 84
>RF00906;MIR1122;AF022725.1/11631-11507 4513:Hordeum vulgare
Length = 125
Score = 54.0 bits (27), Expect = 4e-07
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 28 tacttgtcgcagaaatggatgtatctagatgtattttagttctagatacat 78
|||||||| || |||| ||||||||||||||||| || ||||||||||||
Sbjct: 102 tacttgtcataggaatgtatgtatctagatgtattataattctagatacat 52
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtcgcagaaatg 44
|||||||||||| |||||||||||||| || |||||
Sbjct: 5 tactccctccgtccggaattacttgtcacataaatg 40
>RF00906;MIR1122;AY485644.1/203741-203618 4568:Triticum monococcum
Length = 124
Score = 52.0 bits (26), Expect = 2e-06
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtcgcagaaatggatgtatctagatgtattttagtt 68
|||| ||||||| |||| ||||||||| ||||||||||| ||||||| || |||||||
Sbjct: 5 tacttcctccgtctggaaatacttgtcggagaaatggatgcatctagacgtgctttagtt 64
Query: 69 ctagatacattcat 82
|| | ||||||||
Sbjct: 65 ttatacacattcat 78
>RF00906;MIR1122;AM932683.1/23310-23434 4565:Triticum aestivum
(bread wheat)
Length = 125
Score = 52.0 bits (26), Expect = 2e-06
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtcgcagaaatggatgtatctagatgtattttagtt 68
|||||| ||||| ||||| ||||||||| | ||||||||||| |||| ||||||||||
Sbjct: 5 tactccttccgtccggaaatacttgtcgaaagaatggatgtatttagacatattttagtt 64
Query: 69 ctagat 74
|||||
Sbjct: 65 ttagat 70
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 7 actactccctccgttcggaattacttgtcgcagaaatg 44
|||||||||||||||| ||| ||||||||||| |||||
Sbjct: 123 actactccctccgttcagaaatacttgtcgcaaaaatg 86
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 89 gacaagtaattctgaacggagggagta 115
|||||||| ||||||||||||||||||
Sbjct: 95 gacaagtatttctgaacggagggagta 121
>RF00906;MIR1122;AK248306.1/5271-5157 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 115
Score = 52.0 bits (26), Expect = 2e-06
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 7 actactccctccgttcggaattacttgtcgcagaaatggatgtatctaga 56
|||||| ||||| ||||||||||| |||||| |||||| ||||||||||
Sbjct: 3 actactgcctccattcggaattacctgtcgctgaaatgagtgtatctaga 52
>RF00906;MIR1122;AY663392.1/94965-94831 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 46 atgtatctagatgtattttagttctagatacat 78
|||||| |||||||||||||||||||| |||||
Sbjct: 84 atgtatatagatgtattttagttctaggtacat 52
>RF00906;MIR1122;AY951945.1/37511-37377 4568:Triticum monococcum
Length = 135
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 46 atgtatctagatgtattttagttctagatacat 78
|||||||||||| |||||||||||||| |||||
Sbjct: 84 atgtatctagatatattttagttctaggtacat 52
>RF00906;MIR1122;AY663392.1/105130-105016 4565:Triticum aestivum
(bread wheat)
Length = 115
Score = 48.1 bits (24), Expect = 3e-05
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 40 aaatggatgtatctagatgtattttagttctagatacattcatatccgagacaagtaatt 99
|||||| |||||||||| | ||||| ||||||||| | |||| | |||||||| ||
Sbjct: 36 aaatggttgtatctagacttgttttaattctagatataatcatttttaagacaagtgttt 95
Query: 100 ctgaacggagggagta 115
||||||||||||||||
Sbjct: 96 ctgaacggagggagta 111
>RF00906;MIR1122;AF459639.1/191055-190921 4568:Triticum monococcum
Length = 135
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 88 agacaagtaattctgaacggagggagta 115
||||||||||||| ||||||||||||||
Sbjct: 32 agacaagtaattcggaacggagggagta 5
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtc 35
|||||||||||||| ||||||||||||
Sbjct: 5 tactccctccgttccgaattacttgtc 31
>RF00906;MIR1122;DQ123819.1/2832-2966 4571:Triticum turgidum
Length = 135
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 88 agacaagtaattctgaacggagggagta 115
||||||||||||| ||||||||||||||
Sbjct: 32 agacaagtaattcagaacggagggagta 5
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtc 35
|||||||||||||| ||||||||||||
Sbjct: 5 tactccctccgttctgaattacttgtc 31
>RF00906;MIR1122;AY853252.1/156228-156351 4513:Hordeum vulgare
Length = 124
Score = 48.1 bits (24), Expect = 3e-05
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 7 actactccctccgttcggaattacttgtcgcagaaatggatgtatctagatgtattttag 66
|||||||||||||| || |||||||| | ||||||||| ||||||| ||||||||
Sbjct: 3 actactccctccgtctaaaaatacttgtcctaaaaatggatgaatctagacttattttag 62
Query: 67 ttctagatacat 78
|| |||||||||
Sbjct: 63 ttatagatacat 74
>RF00906;MIR1122;DQ445236.1/8526-8403 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtcgcagaaatg 44
|||||||||||| ||||| |||||||| ||||||||
Sbjct: 5 tactccctccgtccggaaatacttgtcccagaaatg 40
>RF00906;MIR1122;EU730901.1/65072-65195 15368:Brachypodium
distachyon
Length = 124
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 89 gacaagtaattctgaacggagggagtat 116
||||||||||||||| ||||||||||||
Sbjct: 31 gacaagtaattctgaccggagggagtat 4
>RF00906;MIR1122;AB095006.1/1949-2072 4565:Triticum aestivum
(bread wheat)
Length = 124
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 40 aaatggatgtatctagatgtattttagttctagatacat 78
||||| |||||| |||| |||||||||||||| ||||||
Sbjct: 90 aaatgaatgtatttagacgtattttagttctacatacat 52
>RF00906;MIR1122;DQ537336.1/120340-120474 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 45 gatgtatctagatgtattttagttctagata 75
||||||||||||||||| |||||| ||||||
Sbjct: 51 gatgtatctagatgtatattagttttagata 81
>RF00906;MIR1122;EU835980.1/752-629 4565:Triticum aestivum (bread
wheat)
Length = 124
Score = 44.1 bits (22), Expect = 4e-04
Identities = 58/70 (82%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtcgcagaaatggatgtatctagatgtattttagtt 68
|||||||||||| | || |||||| | |||||||| ||||| |||| ||||||||||
Sbjct: 120 tactccctccgtctgaaaatacttgccctagaaatggttgtatgtagacttattttagtt 61
Query: 69 ctagatacat 78
|||||||||
Sbjct: 60 atagatacat 51
>RF00906;MIR1122;AY137517.1/112-234 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 123
Score = 44.1 bits (22), Expect = 4e-04
Identities = 58/70 (82%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtcgcagaaatggatgtatctagatgtattttagtt 68
||||||| |||| ||||| ||| |||| |||||| ||||||||||| ||||||||||
Sbjct: 119 tactccccccgtccggaaatacctgtcttcgaaatgaatgtatctagacttattttagtt 60
Query: 69 ctagatacat 78
|| ||||||
Sbjct: 59 atacatacat 50
>RF00906;MIR1122;DQ445241.1/4641-4518 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 44.1 bits (22), Expect = 4e-04
Identities = 58/70 (82%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtcgcagaaatggatgtatctagatgtattttagtt 68
|||||||| |||||| || |||||||| | || | |||||||||||| ||||||| ||
Sbjct: 5 tactcccttcgttcgaaaatacttgtcctaaaagtagatgtatctagacttattttactt 64
Query: 69 ctagatacat 78
|||||||||
Sbjct: 65 atagatacat 74
>RF00906;MIR1122;EF059989.1/67769-67635 29664:Brachypodium
sylvaticum
Length = 135
Score = 44.1 bits (22), Expect = 4e-04
Identities = 35/38 (92%), Gaps = 1/38 (2%)
Strand = Plus / Minus
Query: 45 gatgtatctagatgtattttagt-tctagatacattca 81
||||||||||||| | ||||||| ||||||||||||||
Sbjct: 86 gatgtatctagatatgttttagtgtctagatacattca 49
