miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU399684.1/4485-4371 4550:Secale cereale (rye)
Length = 115
Score = 131 bits (66), Expect = 2e-30
Identities = 95/106 (89%)
Strand = Plus / Minus
Query: 8 gtactccctccgttcggaattacttgtcgtanaaatggatgtatctaaacatattttagn 67
|||||||||||||||||||||||||||| | ||||||||||||||| || ||||||||
Sbjct: 112 gtactccctccgttcggaattacttgtctcagaaatggatgtatctagacgtattttagt 53
Query: 68 tctagatacatccatatccganacaagnaattccgaacggagggag 113
|||||||| |||||| | ||| ||||| ||||||||||||||||||
Sbjct: 52 tctagatagatccattttcgagacaagtaattccgaacggagggag 7
Score = 81.8 bits (41), Expect = 2e-15
Identities = 88/105 (83%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtcgtanaaatggatgtatctaaacatattttagnt 68
||||||||||||||||||||||||||| |||||||| |||||| | || || |
Sbjct: 5 tactccctccgttcggaattacttgtctcgaaaatggatctatctagaactaaaatacgt 64
Query: 69 ctagatacatccatatccganacaagnaattccgaacggagggag 113
|||||||||||||| || || ||||| ||||||||||||||||||
Sbjct: 65 ctagatacatccatttctgagacaagtaattccgaacggagggag 109
>RF00906;MIR1122;AY146587.2/110938-111052 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 115
Score = 129 bits (65), Expect = 9e-30
Identities = 94/105 (89%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtcgtanaaatggatgtatctaaacatattttagnt 68
|||||||||||||| ||||||||||||| | ||||||||||||||| ||||||||||| |
Sbjct: 111 tactccctccgttctgaattacttgtcgaaaaaatggatgtatctagacatattttagtt 52
Query: 69 ctagatacatccatatccganacaagnaattccgaacggagggag 113
|||||||||||||| | || ||||| ||||| ||||||||||||
Sbjct: 51 ctagatacatccatttttgagacaagtaattcggaacggagggag 7
Score = 63.9 bits (32), Expect = 5e-10
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 8 gtactccctccgttcggaattacttgtcgtanaaatggatgtatcta 54
||||||||||||||| |||||||||||| | |||||||||||||||
Sbjct: 4 gtactccctccgttccgaattacttgtctcaaaaatggatgtatcta 50
>RF00906;MIR1122;AY491681.1/88752-88866 4568:Triticum monococcum
Length = 115
Score = 121 bits (61), Expect = 2e-27
Identities = 93/105 (88%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtcgtanaaatggatgtatctaaacatattttagnt 68
|||||| |||||| |||||||||||||| | ||||| ||||||||| | |||||||| |
Sbjct: 111 tactccatccgtttggaattacttgtcgcagaaatgaatgtatctagatgtattttagtt 52
Query: 69 ctagatacatccatatccganacaagnaattccgaacggagggag 113
|||||||||||||||||||| ||||| ||||||||| ||||||||
Sbjct: 51 ctagatacatccatatccgagacaagtaattccgaatggagggag 7
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 8 gtactccctccgttcggaattacttgtc 35
||||||||||| ||||||||||||||||
Sbjct: 4 gtactccctccattcggaattacttgtc 31
>RF00906;MIR1122;AM932686.1/4713-4599 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 109 bits (55), Expect = 9e-24
Identities = 87/99 (87%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtcgtanaaatggatgtatctaaacatattttagnt 68
|||||||||||||||||||||||||||| ||||||||||||||| || |||||||| |
Sbjct: 111 tactccctccgttcggaattacttgtcgcgaaaatggatgtatctagacgtattttagtt 52
Query: 69 ctagatacatccatatccganacaagnaattccgaacgg 107
||||||||||| || | ||| |||| ||||||||||||
Sbjct: 51 ctagatacatctattttcgagacaaataattccgaacgg 13
Score = 56.0 bits (28), Expect = 1e-07
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 68 tctagatacatccatatccganacaagnaattccgaacggagggag 113
||||||||||||||| | || ||||| ||||||||||||||||||
Sbjct: 64 tctagatacatccattttcgcgacaagtaattccgaacggagggag 109
>RF00906;MIR1122;AM932682.1/94335-94221 4565:Triticum aestivum
(bread wheat)
Length = 115
Score = 105 bits (53), Expect = 1e-22
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 12 tccctccgttcggaattacttgtcgtanaaatggatgtatctaaacatattttagntcta 71
||||||||||||||||||||||||||| ||||||||||||||| |||| ||| || ||||
Sbjct: 8 tccctccgttcggaattacttgtcgtagaaatggatgtatctagacatttttcagttcta 67
Query: 72 gatacatccat 82
|||||||||||
Sbjct: 68 gatacatccat 78
Score = 56.0 bits (28), Expect = 1e-07
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 16 tccgttcggaattacttgtcgtanaaatggatgtatcta 54
||||||| ||||||||||||| | |||||||||||||||
Sbjct: 104 tccgttccgaattacttgtcgcataaatggatgtatcta 66
>RF00906;MIR1122;AF459085.1/1867-1743 4513:Hordeum vulgare
Length = 125
Score = 95.6 bits (48), Expect = 1e-19
Identities = 67/74 (90%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtcgtanaaatggatgtatctaaacatattttagnt 68
|||||||||||| |||||||| ||||| || ||||||||||||||| || |||||||| |
Sbjct: 121 tactccctccgtccggaattatttgtcatagaaatggatgtatctagacgtattttagtt 62
Query: 69 ctagatacatccat 82
||||||||||||||
Sbjct: 61 ctagatacatccat 48
Score = 46.1 bits (23), Expect = 1e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtcgtanaaatgga 46
|||||||||||| ||||| |||||||||| |||||||
Sbjct: 5 tactccctccgtccggaagtacttgtcgtcaaaatgga 42
>RF00906;MIR1122;EU282737.1/1022-902 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 121
Score = 87.7 bits (44), Expect = 3e-17
Identities = 63/70 (90%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtcgtanaaatggatgtatctaaacatattttagnt 68
|||||||||||| |||||||||||| | || ||||||||| ||||||||||||||||| |
Sbjct: 5 tactccctccgtccggaattacttgacataaaaatggatgcatctaaacatattttagtt 64
Query: 69 ctagatacat 78
||| ||||||
Sbjct: 65 ctaaatacat 74
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtc 35
|||||||||||| ||||||||||||||
Sbjct: 121 tactccctccgtccggaattacttgtc 95
>RF00906;MIR1122;AF548379.1/5968-6092 37682:Aegilops tauschii
Length = 125
Score = 87.7 bits (44), Expect = 3e-17
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtcgtanaaatggatgtatctaaacatattttagnt 68
|||||||||||| || ||||| |||||| | ||||||||||||||| || |||||||| |
Sbjct: 5 tactccctccgtccgaaattatttgtcggagaaatggatgtatctagacgtattttagtt 64
Query: 69 ctagatacatccat 82
||||||||||||||
Sbjct: 65 ctagatacatccat 78
>RF00906;MIR1122;DQ889708.1/343-221 4565:Triticum aestivum (bread
wheat)
Length = 123
Score = 83.8 bits (42), Expect = 5e-16
Identities = 80/94 (85%)
Strand = Plus / Plus
Query: 20 ttcggaattacttgtcgtanaaatggatgtatctaaacatattttagntctagatacatc 79
||||||||||||||||| | ||||||||||||||| || |||||| |||||||||||
Sbjct: 24 ttcggaattacttgtcgcagaaatggatgtatctagacgagttttagttctagatacatt 83
Query: 80 catatccganacaagnaattccgaacggagggag 113
||| | ||| ||||| ||||||||| |||||||
Sbjct: 84 cattttcgaaacaagtaattccgaatagagggag 117
>RF00906;MIR1122;EU117148.1/1866-1980 4571:Triticum turgidum
Length = 115
Score = 81.8 bits (41), Expect = 2e-15
Identities = 88/105 (83%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtcgtanaaatggatgtatctaaacatattttagnt 68
|||||||||||||| |||||||| |||| | ||||||||||||||| | |||||||| |
Sbjct: 5 tactccctccgttctgaattactcgtcgcagaaatggatgtatctagatgtattttagtt 64
Query: 69 ctagatacatccatatccganacaagnaattccgaacggagggag 113
|||||| |||||| || || || || |||| ||||||||||||
Sbjct: 65 ttagatatatccatttctgagacgagtaatttggaacggagggag 109
>RF00906;MIR1122;AY643843.1/31186-31309 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 81.8 bits (41), Expect = 2e-15
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtcgtanaaatggatgtatctaaacatattttagnt 68
|||||||||||||||||| |||||||| || ||||| ||||||||| || |||||||| |
Sbjct: 120 tactccctccgttcggaaatacttgtcctaaaaatgaatgtatctagacttattttagtt 61
Query: 69 ctagatacatc 79
||||||||||
Sbjct: 60 atagatacatc 50
>RF00906;MIR1122;AY013754.1/1932-2046 37682:Aegilops tauschii
Length = 115
Score = 81.8 bits (41), Expect = 2e-15
Identities = 66/75 (88%)
Strand = Plus / Minus
Query: 8 gtactccctccgttcggaattacttgtcgtanaaatggatgtatctaaacatattttagn 67
||||||||||||||| ||||||||||||| | ||||||||||||| | ||||||||
Sbjct: 112 gtactccctccgttccgaattacttgtcgcacgtatggatgtatctagatgtattttagt 53
Query: 68 tctagatacatccat 82
|||||||||||||||
Sbjct: 52 tctagatacatccat 38
>RF00906;MIR1122;CT009625.1/8885-8999 37682:Aegilops tauschii
Length = 115
Score = 79.8 bits (40), Expect = 8e-15
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 8 gtactccctccgttcggaattacttgtcgtanaaatggatgtatcta 54
|||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 4 gtactccctccgttcggaattacttgtcataaaaatggatgtatcta 50
Score = 65.9 bits (33), Expect = 1e-10
Identities = 86/105 (81%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtcgtanaaatggatgtatctaaacatattttagnt 68
||||||||| ||||| ||||||| ||| | ||||| ||||||||| | |||||||| |
Sbjct: 111 tactccctctgttcgaaattactcgtccaagaaatgaatgtatctagatgtattttagtt 52
Query: 69 ctagatacatccatatccganacaagnaattccgaacggagggag 113
||||||||||||| | ||||| ||||||||||||||||||
Sbjct: 51 atagatacatccatttttatgacaagtaattccgaacggagggag 7
>RF00906;MIR1122;AY235466.1/780-656 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 73.8 bits (37), Expect = 5e-13
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 8 gtactccctccgttcggaattacttgtcgtanaaatggatgtatctaaacatattttagn 67
||||||||||||| ||||| ||||||||| |||||||||||||| | ||||||||
Sbjct: 4 gtactccctccgtccggaaatacttgtcgggggaatggatgtatctagatgtattttagt 63
Query: 68 tctagatacatccat 82
|||||||||||||||
Sbjct: 64 tctagatacatccat 78
>RF00906;MIR1122;AY235464.1/714-838 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 71.9 bits (36), Expect = 2e-12
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtcgtanaaatggatgtatctaaacatattttagnt 68
|||||||||||| ||||| ||||||||| |||||||||||||| | |||||||| |
Sbjct: 121 tactccctccgtccggaaatacttgtcgggggaatggatgtatctagatgtattttagtt 62
Query: 69 ctagatacatccat 82
||||||||||||||
Sbjct: 61 ctagatacatccat 48
>RF00906;MIR1122;EU096089.1/6299-6422 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 124
Score = 71.9 bits (36), Expect = 2e-12
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 8 gtactccctccgttcggaattacttgtcgtanaaatggatgtatctaaacatattttagn 67
||||||||||||| ||||| |||||||| || | ||| ||||||||| || ||||||||
Sbjct: 121 gtactccctccgtccggaaatacttgtcctagagatgaatgtatctagacttattttagt 62
Query: 68 tctagatacatcca 81
| ||||||||||||
Sbjct: 61 tatagatacatcca 48
Score = 48.1 bits (24), Expect = 3e-05
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtcgtanaaatggat 47
|||||||||||| ||||| |||||||| || ||||||||
Sbjct: 5 tactccctccgtccggaaatacttgtcctaaaaatggat 43
>RF00906;MIR1122;EU282650.1/1397-1273 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 71.9 bits (36), Expect = 2e-12
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtcgtanaaatggatgtatctaaacatattttagnt 68
||||||| |||| ||||| |||||||| || |||||||||||||| | |||||||| |
Sbjct: 5 tactcccgccgtccggaaatacttgtcataggaatggatgtatctagatgtattttagtt 64
Query: 69 ctagatacatccat 82
||||||||||||||
Sbjct: 65 ctagatacatccat 78
>RF00906;MIR1122;DQ245819.1/394-508 4577:Zea mays
Length = 115
Score = 69.9 bits (35), Expect = 7e-12
Identities = 85/103 (82%)
Strand = Plus / Minus
Query: 8 gtactccctccgttcggaattacttgtcgtanaaatggatgtatctaaacatattttagn 67
|||| ||||||||||||||||| |||||| |||| ||| |||||| | ||||||||
Sbjct: 112 gtaccccctccgttcggaattaattgtcgcgaaaatagatatatctagatgtattttagt 53
Query: 68 tctagatacatccatatccganacaagnaattccgaacggagg 110
|||| |||| ||||| ||||| ||| | |||||| ||||||||
Sbjct: 52 tctaaatacgtccatttccgagacaggtaattccaaacggagg 10
>RF00906;MIR1122;EF540321.1/236564-236678 4571:Triticum turgidum
Length = 115
Score = 67.9 bits (34), Expect = 3e-11
Identities = 84/102 (82%)
Strand = Plus / Plus
Query: 12 tccctccgttcggaattacttgtcgtanaaatggatgtatctaaacatattttagntcta 71
||||||||||| |||||||| ||| | ||||||||||||||| | |||||||| | ||
Sbjct: 8 tccctccgttccgaattactcgtccaataaatggatgtatctagatgtattttagttata 67
Query: 72 gatacatccatatccganacaagnaattccgaacggagggag 113
||||||||||| || | || || |||| ||||||||||||
Sbjct: 68 gatacatccatttctgcgacgagtaatttggaacggagggag 109
Score = 56.0 bits (28), Expect = 1e-07
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 8 gtactccctccgttcggaattacttgtcgtanaaatggatgtatcta 54
||||||||||||||| ||||||| |||| | |||||||||||||||
Sbjct: 112 gtactccctccgttccaaattactcgtcgcagaaatggatgtatcta 66
>RF00906;MIR1122;AY368673.1/196592-196716 4571:Triticum turgidum
Length = 125
Score = 65.9 bits (33), Expect = 1e-10
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 8 gtactccctccgttcggaattacttgtcgtanaaatggatgtatctaaacatattttagn 67
|||||||||| || ||||| |||||||| | |||||||||| ||| || ||||||||
Sbjct: 122 gtactccctctgtccggaaatacttgtcagaggaatggatgtacctagacgtattttagt 63
Query: 68 tctagatacatccat 82
|||||||||||||||
Sbjct: 62 tctagatacatccat 48
>RF00906;MIR1122;EU159422.1/10160-10283 37682:Aegilops tauschii
Length = 124
Score = 65.9 bits (33), Expect = 1e-10
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 8 gtactccctccgttcggaattacttgtcgtanaaatggatgtatctaaacatattttagn 67
||||| ||| |||||||| |||||||| | ||||||||||||||| || |||||||
Sbjct: 4 gtactgcctacgttcggatatacttgtcagagaaatggatgtatctagacgtattttact 63
Query: 68 tctagatacatccat 82
|||||||||||||||
Sbjct: 64 tctagatacatccat 78
>RF00906;MIR1122;BT009295.1/1923-1809 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 63.9 bits (32), Expect = 5e-10
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 13 ccctccgttcggaattacttgtcgtanaaatggatgtatctaaacatattttagntctag 72
|||||||||| ||||||||||||| | ||||||||||| | | |||||||| |||||
Sbjct: 107 ccctccgttccgaattacttgtcgcacttatggatgtatcaagatgtattttagttctag 48
Query: 73 atacatccat 82
||||||||||
Sbjct: 47 atacatccat 38
>RF00906;MIR1122;AM932683.1/23310-23434 4565:Triticum aestivum
(bread wheat)
Length = 125
Score = 63.9 bits (32), Expect = 5e-10
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtcgtanaaatggatgtatctaaacatattttagnt 68
|||||| ||||| ||||| ||||||||| | ||||||||||| || ||||||||||| |
Sbjct: 5 tactccttccgtccggaaatacttgtcgaaagaatggatgtatttagacatattttagtt 64
Query: 69 ctagatacatccat 82
||||| |||||||
Sbjct: 65 ttagatgcatccat 78
>RF00906;MIR1122;AF325196.1/33744-33620 4565:Triticum aestivum
(bread wheat)
Length = 125
Score = 63.9 bits (32), Expect = 5e-10
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtcgtanaaatggatgtatctaaacatattttagnt 68
|||||||||||| ||||| ||||||||| | ||||| || |||||| | ||||||| |
Sbjct: 121 tactccctccgtccggaaatacttgtcggagaaatgaatctatctagatgtattttaatt 62
Query: 69 ctagatacatccat 82
||||||||||||||
Sbjct: 61 ctagatacatccat 48
Score = 48.1 bits (24), Expect = 3e-05
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtcgtanaaatggat 47
||||||||| || ||||||||||||||| | ||||||||
Sbjct: 5 tactccctctgtccggaattacttgtcgcataaatggat 43
>RF00906;MIR1122;AB298184.1/15044-14931 4565:Triticum aestivum
(bread wheat)
Length = 114
Score = 60.0 bits (30), Expect = 7e-09
Identities = 87/106 (82%), Gaps = 1/106 (0%)
Strand = Plus / Plus
Query: 8 gtactccctccgttcggaattacttgtcgtanaaatggatgtatctaaacatattttagn 67
|||| |||||||||| || ||||||||| | | ||||||||||||| | ||||||||
Sbjct: 4 gtaccccctccgttccga-ttacttgtctcacatatggatgtatctagatgtattttagt 62
Query: 68 tctagatacatccatatccganacaagnaattccgaacggagggag 113
||||||||||||||| || | || || |||| ||||||||||||
Sbjct: 63 tctagatacatccatttcagcgacgagtaatttggaacggagggag 108
Score = 46.1 bits (23), Expect = 1e-04
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtcgtanaaatggatgtatcta 54
|||||||||||||| ||||||| |||| |||||||||||||||
Sbjct: 110 tactccctccgttccaaattactcgtcgctgaaatggatgtatcta 65
>RF00906;MIR1122;AY641411.1/11483-11599 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 117
Score = 60.0 bits (30), Expect = 7e-09
Identities = 62/72 (86%), Gaps = 1/72 (1%)
Strand = Plus / Minus
Query: 12 tccctccgttcggaattacttgtcgtanaaatggatgtatctaaacata-ttttagntct 70
|||||| || |||||||||||| || | ||||||||||||||| || | |||||| |||
Sbjct: 110 tccctctgtccggaattacttgccgcaaaaatggatgtatctagacgcatttttagttct 51
Query: 71 agatacatccat 82
||||||||||||
Sbjct: 50 agatacatccat 39
>RF00906;MIR1122;BT009083.1/864-988 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 58.0 bits (29), Expect = 3e-08
Identities = 61/71 (85%), Gaps = 1/71 (1%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtcgtanaaatggatgtatctaaacata-ttttagn 67
|||||||||| | ||||| ||| ||||| | |||| ||||||||||||| || ||||||
Sbjct: 121 tactccctccatccggaaatacctgtcggagaaatagatgtatctaaacgtatttttagt 62
Query: 68 tctagatacat 78
|||||||||||
Sbjct: 61 tctagatacat 51
Score = 44.1 bits (22), Expect = 4e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 13 ccctccgttcggaattacttgtcgtanaaatgg 45
|||||| | ||||||||||||||||| ||||||
Sbjct: 8 ccctccatccggaattacttgtcgtagaaatgg 40
>RF00906;MIR1122;EF028786.1/1091-968 4565:Triticum aestivum (bread
wheat)
Length = 124
Score = 58.0 bits (29), Expect = 3e-08
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 8 gtactccctccgttcggaattacttgtcgtanaaatggatgtatctaaacatattttagn 67
||||||||||||| || || |||||||| | |||| |||||||||| || ||||||||
Sbjct: 4 gtactccctccgtccgaaaatacttgtctgagaaattgatgtatctagacgtattttagt 63
Query: 68 tctagatacat 78
|||| ||||||
Sbjct: 64 tctaaatacat 74
>RF00906;MIR1122;AY963808.1/10854-10720 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 58.0 bits (29), Expect = 3e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 44 ggatgtatctaaacatattttagntctagatacatc 79
||||||||||| ||||||||||| ||||||||||||
Sbjct: 50 ggatgtatctagacatattttagttctagatacatc 85
>RF00906;MIR1122;AY853252.1/156228-156351 4513:Hordeum vulgare
Length = 124
Score = 58.0 bits (29), Expect = 3e-08
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 28 tacttgtcgtanaaatggatgtatctaaacatattttagntctagatacatccat 82
|||||||| || ||||||||| ||||| || |||||||| | |||||||||||||
Sbjct: 24 tacttgtcctaaaaatggatgaatctagacttattttagttatagatacatccat 78
>RF00906;MIR1122;DQ445241.1/4641-4518 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 58.0 bits (29), Expect = 3e-08
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 8 gtactccctccgttcggaattacttgtcgtanaaatggatgtatctaaacatattttagn 67
||||||||| |||||| || |||||||| || || | |||||||||| || |||||||
Sbjct: 4 gtactcccttcgttcgaaaatacttgtcctaaaagtagatgtatctagacttattttact 63
Query: 68 tctagatacatccat 82
| |||||||||||||
Sbjct: 64 tatagatacatccat 78
Score = 44.1 bits (22), Expect = 4e-04
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 8 gtactccctccgttcggaattacttgtcgtanaaatg 44
||||||||||||| ||||| |||||||| || |||||
Sbjct: 121 gtactccctccgtccggaaatacttgtcataaaaatg 85
>RF00906;MIR1122;EU282564.1/350-463 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 114
Score = 58.0 bits (29), Expect = 3e-08
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 8 gtactccctccgttcggaattacttgtcgtanaaatggatgtatctaaacatattttagn 67
|||||||||| || | ||| ||||||||| ||||||||||||||| | ||||| ||
Sbjct: 4 gtactccctctgtcccgaaatacttgtcgcggaaatggatgtatctagatgtatttcagt 63
Query: 68 tctagatacatccat 82
|||||||||||||||
Sbjct: 64 tctagatacatccat 78
Score = 58.0 bits (29), Expect = 3e-08
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 23 ggaattacttgtcgtanaaatggatgtatcta 54
|||||||||||||||| |||||||||||||||
Sbjct: 97 ggaattacttgtcgtagaaatggatgtatcta 66
>RF00906;MIR1122;BT009606.1/1324-1200 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 56.0 bits (28), Expect = 1e-07
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtcgtanaaatggatgtatctaaacatattttagnt 68
|||||||||||||| |||||||| ||| | ||||| ||||||||| | ||||||| |
Sbjct: 121 tactccctccgttcagaattactcgtccaagaaatgaatgtatctagatgtattttaatt 62
Query: 69 ctagatacatccat 82
|||||||||||||
Sbjct: 61 gtagatacatccat 48
>RF00906;MIR1122;CT009585.1/3980-4094 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 56.0 bits (28), Expect = 1e-07
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtcgtanaaatggatgtatctaaacatattttagnt 68
|||||||||||| || || |||||||| | |||||||| |||||| | |||||||| |
Sbjct: 111 tactccctccgtccgaaaatacttgtcattgaaatggatatatctagatgtattttagtt 52
Query: 69 ctagatacatccat 82
||||| ||||||||
Sbjct: 51 ctagacacatccat 38
Score = 46.1 bits (23), Expect = 1e-04
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtcgtanaaatggatgtatcta 54
|||||||||||| | |||||||||||| | |||||||||| ||||
Sbjct: 5 tactccctccgtccagaattacttgtcatcaaaatggatgtgtcta 50
>RF00906;MIR1122;AF474373.1/14703-14580 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 56.0 bits (28), Expect = 1e-07
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtcgtanaaatggatgtatctaaacatattttagnt 68
||||||| |||| ||||| |||||||| || | ||| ||||||||||| |||||||| |
Sbjct: 120 tactccccccgtccggaaatacttgtcctaaagatgaatgtatctaaatttattttagtt 61
Query: 69 ctagatacatccat 82
| |||||||||||
Sbjct: 60 atggatacatccat 47
>RF00906;MIR1122;L41869.1/3010-3134 4513:Hordeum vulgare
Length = 125
Score = 56.0 bits (28), Expect = 1e-07
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtcgtanaaatggatgtatctaaacatattttagnt 68
|||||||| ||| ||||| |||||||| | |||||||||||||| | |||||||| |
Sbjct: 5 tactcccttcgtccggaaatacttgtccaaagaatggatgtatctagatgtattttagtt 64
Query: 69 ctagatacatccat 82
|||||||||||||
Sbjct: 65 atagatacatccat 78
>RF00906;MIR1122;AF474373.1/52258-52134 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 56.0 bits (28), Expect = 1e-07
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtcgtanaaatggatgtatctaaacatattttagnt 68
||||||||| || ||||| || ||||| || |||||||||||||| | |||||||| |
Sbjct: 5 tactccctctgtccggaaatatttgtcataggaatggatgtatctagatgtattttagtt 64
Query: 69 ctagatacatccat 82
||||||| ||||||
Sbjct: 65 ctagatatatccat 78
Score = 48.1 bits (24), Expect = 3e-05
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtcgtanaaatggat 47
|||||||||||| |||||||||||||| | ||||||||
Sbjct: 121 tactccctccgtccggaattacttgtcacacaaatggat 83
>RF00906;MIR1122;EF081030.1/6132-5986 4572:Triticum urartu
Length = 147
Score = 54.0 bits (27), Expect = 4e-07
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 8 gtactccctccgttcggaattacttgtcgtanaaatggatgtatct 53
||||||||||||||| ||||||||||||| | ||||||||||||
Sbjct: 144 gtactccctccgttccgaattacttgtcgcaggtatggatgtatct 99
>RF00906;MIR1122;AY951945.1/93583-93458 4568:Triticum monococcum
Length = 126
Score = 52.0 bits (26), Expect = 2e-06
Identities = 64/76 (84%), Gaps = 1/76 (1%)
Strand = Plus / Minus
Query: 8 gtactccctccgttcggaattacttgtcgtanaaatggatgtatctaa-acatattttag 66
||||||||||||| || || |||||||| | |||||||||||| || | ||||||||
Sbjct: 123 gtactccctccgtccgaaaatacttgtccgaggaatggatgtatcaaagatgtattttag 64
Query: 67 ntctagatacatccat 82
|||||||||||||||
Sbjct: 63 ttctagatacatccat 48
Score = 50.1 bits (25), Expect = 7e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 8 gtactccctccgttcggaattacttgtcgtanaaatggat 47
||||||||||||| ||||| ||||||||| | ||||||||
Sbjct: 4 gtactccctccgtccggaaatacttgtcgcagaaatggat 43
>RF00906;MIR1122;AF254799.1/60623-60744 4513:Hordeum vulgare
Length = 122
Score = 52.0 bits (26), Expect = 2e-06
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 8 gtactccctccgttcggaattacttgtcgtanaaatggatgtatctaaa 56
|||||||||| | |||||||||||||| || |||| ||||||||||||
Sbjct: 119 gtactccctctctccggaattacttgtcataaaaatagatgtatctaaa 71
>RF00906;MIR1122;X13580.1/135-24 4565:Triticum aestivum (bread
wheat)
Length = 112
Score = 50.1 bits (25), Expect = 7e-06
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 8 gtactccctccgttcggaattacttgtcgtanaaatggatgtatctaaacatattttagn 67
|||||||||||||| |||||| | |||| | |||| |||||||||| ||||||||
Sbjct: 4 gtactccctccgtttcgaattattcgtcgcagaaatagatgtatctagttgtattttagt 63
Query: 68 tctagatacat 78
|||||||||||
Sbjct: 64 tctagatacat 74
>RF00906;MIR1122;EU812563.1/59152-59276 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 50.1 bits (25), Expect = 7e-06
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 8 gtactccctccgttcggaattacttgtcgtanaaatggatgtatctaaacatattttagn 67
||||||||||| | || || |||||| | || |||| ||||||||| | |||||||||
Sbjct: 122 gtactccctccatccgaaaatacttggcataggaatgtatgtatctagatatattttagt 63
Query: 68 tctagatacat 78
|||||||||||
Sbjct: 62 tctagatacat 52
>RF00906;MIR1122;DQ445236.1/8526-8403 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 124
Score = 50.1 bits (25), Expect = 7e-06
Identities = 62/75 (82%)
Strand = Plus / Minus
Query: 8 gtactccctccgttcggaattacttgtcgtanaaatggatgtatctaaacatattttagn 67
||||||||||||| ||||| ||||||| || ||| || |||||| || ||||||||
Sbjct: 121 gtactccctccgtccggaaatacttgttctaaggatgaatatatctagacttattttagt 62
Query: 68 tctagatacatccat 82
| |||||||||||||
Sbjct: 61 tatagatacatccat 47
>RF00906;MIR1122;FJ225151.1/115-1 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 48.1 bits (24), Expect = 3e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 10 actccctccgttcggaattacttgtcgtanaaatg 44
||||||||||||||||| ||||||||| | |||||
Sbjct: 1 actccctccgttcggaaatacttgtcggagaaatg 35
>RF00906;MIR1122;DQ123819.1/2832-2966 4571:Triticum turgidum
Length = 135
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 8 gtactccctccgttcggaattacttgtc 35
||||||||||||||| ||||||||||||
Sbjct: 4 gtactccctccgttctgaattacttgtc 31
>RF00906;MIR1122;CT009586.1/21808-21942 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 48.1 bits (24), Expect = 3e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 44 ggatgtatctaaacatattttagntctagatacat 78
|||||||| |||||||||||||| |||| ||||||
Sbjct: 50 ggatgtatttaaacatattttagttctaaatacat 84
>RF00906;MIR1122;AF521177.1/9890-9767 4513:Hordeum vulgare
Length = 124
Score = 48.1 bits (24), Expect = 3e-05
Identities = 61/74 (82%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtcgtanaaatggatgtatctaaacatattttagnt 68
|||| ||||||| ||||| |||||||| || | ||| ||||||||| || |||| || |
Sbjct: 120 tactacctccgtccggaaatacttgtcctacagatgaatgtatctagacttattctaatt 61
Query: 69 ctagatacatccat 82
|||||||||||||
Sbjct: 60 gtagatacatccat 47
>RF00906;MIR1122;AF459639.1/191055-190921 4568:Triticum monococcum
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtc 35
|||||||||||||| ||||||||||||
Sbjct: 5 tactccctccgttccgaattacttgtc 31
>RF00906;MIR1122;AF022725.1/11631-11507 4513:Hordeum vulgare
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtc 35
|||||||||||| ||||||||||||||
Sbjct: 5 tactccctccgtccggaattacttgtc 31
>RF00906;MIR1122;DQ145552.1/668-803 4573:Aegilops speltoides
Length = 136
Score = 46.1 bits (23), Expect = 1e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 6 acgtactccctccgttcggaattacttgtcgtanaaatggat 47
|||||||||||||||||| || |||||||| | ||||||||
Sbjct: 2 acgtactccctccgttcgaaaatacttgtcatcaaaatggat 43
