miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;CT009625.1/8885-8999 37682:Aegilops tauschii
Length = 115
Score = 159 bits (80), Expect = 2e-38
Identities = 92/96 (95%)
Strand = Plus / Plus
Query: 49 tactccctccgttcggaattacttgtcacaaaaatggatgtatctacaactaaaatacat 108
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 5 tactccctccgttcggaattacttgtcataaaaatggatgtatctataactaaaatacat 64
Query: 109 ctagatacattcattttttggacgagtaattccgaa 144
|||||||||||||||| |||||||||||||| ||||
Sbjct: 65 ctagatacattcatttcttggacgagtaatttcgaa 100
Score = 44.1 bits (22), Expect = 7e-04
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 110 tagatacattcattttttggacgagtaattccgaaagaagggagta 155
||||||||| ||||||| ||| |||||||||||| | ||||||||
Sbjct: 50 tagatacatccatttttatgacaagtaattccgaacggagggagta 5
>RF00906;MIR1122;AY146587.2/110938-111052 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 115
Score = 125 bits (63), Expect = 3e-28
Identities = 96/107 (89%)
Strand = Plus / Plus
Query: 49 tactccctccgttcggaattacttgtcacaaaaatggatgtatctacaactaaaatacat 108
|||||||||||||| |||||||||||| |||||||||||||||||| |||||||||| |
Sbjct: 5 tactccctccgttccgaattacttgtctcaaaaatggatgtatctagaactaaaatatgt 64
Query: 109 ctagatacattcattttttggacgagtaattccgaaagaagggagta 155
|||||||||| |||||||| ||| |||||||| ||| | ||||||||
Sbjct: 65 ctagatacatccattttttcgacaagtaattcagaacggagggagta 111
Score = 69.9 bits (35), Expect = 1e-11
Identities = 89/107 (83%)
Strand = Plus / Minus
Query: 49 tactccctccgttcggaattacttgtcacaaaaatggatgtatctacaactaaaatacat 108
|||||||||||||| |||||||||||| ||||||||||||||||| | || || |
Sbjct: 111 tactccctccgttctgaattacttgtcgaaaaaatggatgtatctagacatattttagtt 52
Query: 109 ctagatacattcattttttggacgagtaattccgaaagaagggagta 155
|||||||||| ||||||| ||| |||||||| ||| | ||||||||
Sbjct: 51 ctagatacatccatttttgagacaagtaattcggaacggagggagta 5
>RF00906;MIR1122;EF540321.1/236564-236678 4571:Triticum turgidum
Length = 115
Score = 119 bits (60), Expect = 2e-26
Identities = 84/92 (91%)
Strand = Plus / Minus
Query: 49 tactccctccgttcggaattacttgtcacaaaaatggatgtatctacaactaaaatacat 108
|||||||||||||| ||||||| ||| || ||||||||||||||| |||||||||||||
Sbjct: 111 tactccctccgttccaaattactcgtcgcagaaatggatgtatctataactaaaatacat 52
Query: 109 ctagatacattcattttttggacgagtaattc 140
|||||||||| ||||| |||||||||||||||
Sbjct: 51 ctagatacatccatttattggacgagtaattc 20
Score = 46.1 bits (23), Expect = 2e-04
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 52 tccctccgttcggaattacttgtcacaaaaatggatgtatcta 94
||||||||||| |||||||| ||| | |||||||||||||||
Sbjct: 8 tccctccgttccgaattactcgtccaataaatggatgtatcta 50
>RF00906;MIR1122;EU399684.1/4485-4371 4550:Secale cereale (rye)
Length = 115
Score = 119 bits (60), Expect = 2e-26
Identities = 96/108 (88%)
Strand = Plus / Plus
Query: 48 ctactccctccgttcggaattacttgtcacaaaaatggatgtatctacaactaaaataca 107
|||||||||||||||||||||||||||| | ||||||||| |||||| |||||||||||
Sbjct: 4 ctactccctccgttcggaattacttgtctcgaaaatggatctatctagaactaaaatacg 63
Query: 108 tctagatacattcattttttggacgagtaattccgaaagaagggagta 155
||||||||||| ||||| | ||| |||||||||||| | ||||||||
Sbjct: 64 tctagatacatccatttctgagacaagtaattccgaacggagggagta 111
Score = 75.8 bits (38), Expect = 2e-13
Identities = 44/46 (95%)
Strand = Plus / Minus
Query: 49 tactccctccgttcggaattacttgtcacaaaaatggatgtatcta 94
||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 111 tactccctccgttcggaattacttgtctcagaaatggatgtatcta 66
>RF00906;MIR1122;BT009606.1/1324-1200 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 115 bits (58), Expect = 2e-25
Identities = 73/78 (93%)
Strand = Plus / Plus
Query: 78 aaaaatggatgtatctacaactaaaatacatctagatacattcattttttggacgagtaa 137
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 44 aaaaatggatgtatctacaattaaaatacatctagatacattcatttcttggacgagtaa 103
Query: 138 ttccgaaagaagggagta 155
||| ||| | ||||||||
Sbjct: 104 ttctgaacggagggagta 121
Score = 50.1 bits (25), Expect = 1e-05
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 46 tgctactccctccgttcggaattacttgtcacaaaaatggatgtatcta 94
||||||||||||||||| |||||||| ||| | ||||| |||||||||
Sbjct: 124 tgctactccctccgttcagaattactcgtccaagaaatgaatgtatcta 76
>RF00906;MIR1122;AY491681.1/88752-88866 4568:Triticum monococcum
Length = 115
Score = 105 bits (53), Expect = 2e-22
Identities = 83/93 (89%)
Strand = Plus / Plus
Query: 49 tactccctccgttcggaattacttgtcacaaaaatggatgtatctacaactaaaatacat 108
|||||||||| |||||||||||||||| | | ||||||||||||| |||||||||||||
Sbjct: 5 tactccctccattcggaattacttgtctcggatatggatgtatctagaactaaaatacat 64
Query: 109 ctagatacattcattttttggacgagtaattcc 141
|||||||||||||||| | ||| |||||||||
Sbjct: 65 ctagatacattcatttctgcgacaagtaattcc 97
Score = 54.0 bits (27), Expect = 8e-07
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 48 ctactccctccgttcggaattacttgtcacaaaaatggatgtatcta 94
||||||| |||||| ||||||||||||| || ||||| |||||||||
Sbjct: 112 ctactccatccgtttggaattacttgtcgcagaaatgaatgtatcta 66
>RF00906;MIR1122;EU117148.1/1866-1980 4571:Triticum turgidum
Length = 115
Score = 101 bits (51), Expect = 4e-21
Identities = 96/111 (86%)
Strand = Plus / Minus
Query: 45 ttgctactccctccgttcggaattacttgtcacaaaaatggatgtatctacaactaaaat 104
||||| |||||||||||| ||||||| ||| || |||||||| |||||| |||||||||
Sbjct: 115 ttgctgctccctccgttccaaattactcgtctcagaaatggatatatctaaaactaaaat 56
Query: 105 acatctagatacattcattttttggacgagtaattccgaaagaagggagta 155
|||||||||||||| ||||| | |||||||||||| ||| | ||||||||
Sbjct: 55 acatctagatacatccatttctgcgacgagtaattcagaacggagggagta 5
Score = 61.9 bits (31), Expect = 3e-09
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 48 ctactccctccgttcggaattacttgtcacaaaaatggatgtatcta 94
||||||||||||||| |||||||| ||| || |||||||||||||||
Sbjct: 4 ctactccctccgttctgaattactcgtcgcagaaatggatgtatcta 50
>RF00906;MIR1122;L41869.1/3010-3134 4513:Hordeum vulgare
Length = 125
Score = 99.6 bits (50), Expect = 1e-20
Identities = 71/78 (91%)
Strand = Plus / Minus
Query: 80 aaatggatgtatctacaactaaaatacatctagatacattcattttttggacgagtaatt 139
||||||||||||||| ||||||||||||||||||||||| |||| ||||||| |||| ||
Sbjct: 80 aaatggatgtatctataactaaaatacatctagatacatccattctttggacaagtattt 21
Query: 140 ccgaaagaagggagtatg 157
||| | ||||||||||||
Sbjct: 20 ccggacgaagggagtatg 3
Score = 44.1 bits (22), Expect = 7e-04
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 49 tactccctccgttcggaattacttgtcacaaaaatggatgtatcta 94
|||||||| ||| ||||| |||||||| || ||||||||||||||
Sbjct: 5 tactcccttcgtccggaaatacttgtccaaagaatggatgtatcta 50
>RF00906;MIR1122;AM932686.1/4713-4599 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 97.6 bits (49), Expect = 6e-20
Identities = 94/109 (86%)
Strand = Plus / Plus
Query: 48 ctactccctccgttcggaattacttgtcacaaaaatggatgtatctacaactaaaataca 107
||||| || ||||||||||||| ||||| | ||||| |||||||||| |||||||||||
Sbjct: 4 ctacttccaccgttcggaattatttgtctcgaaaatagatgtatctagaactaaaatacg 63
Query: 108 tctagatacattcattttttggacgagtaattccgaaagaagggagtat 156
||||||||||| |||||| ||| |||||||||||| | |||||||||
Sbjct: 64 tctagatacatccattttcgcgacaagtaattccgaacggagggagtat 112
Score = 75.8 bits (38), Expect = 2e-13
Identities = 44/46 (95%)
Strand = Plus / Minus
Query: 49 tactccctccgttcggaattacttgtcacaaaaatggatgtatcta 94
||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 111 tactccctccgttcggaattacttgtcgcgaaaatggatgtatcta 66
>RF00906;MIR1122;CT009585.1/3980-4094 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 87.7 bits (44), Expect = 6e-17
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 49 tactccctccgttcggaattacttgtcacaaaaatggatgtatctacaactaaaatacat 108
|||||||||||| | ||||||||||||| ||||||||||| |||| |||||||||||||
Sbjct: 5 tactccctccgtccagaattacttgtcatcaaaatggatgtgtctagaactaaaatacat 64
Query: 109 ctagatacattcattt 124
||||||| || |||||
Sbjct: 65 ctagatatatccattt 80
>RF00906;MIR1122;AB298184.1/15044-14931 4565:Triticum aestivum
(bread wheat)
Length = 114
Score = 85.7 bits (43), Expect = 2e-16
Identities = 64/71 (90%)
Strand = Plus / Minus
Query: 48 ctactccctccgttcggaattacttgtcacaaaaatggatgtatctacaactaaaataca 107
||||||||||||||| ||||||| ||| | ||||||||||||||| ||||||||||||
Sbjct: 111 ctactccctccgttccaaattactcgtcgctgaaatggatgtatctagaactaaaataca 52
Query: 108 tctagatacat 118
|||||||||||
Sbjct: 51 tctagatacat 41
>RF00906;MIR1122;AY643843.1/31186-31309 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 77.8 bits (39), Expect = 5e-14
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 85 gatgtatctacaactaaaatacatctagatacattcattttttggacgagtaattccgaa 144
|||||||||| |||||||||| ||||||||||||||||||| |||| |||| |||||||
Sbjct: 50 gatgtatctataactaaaataagtctagatacattcatttttaggacaagtatttccgaa 109
Query: 145 agaagggagta 155
| ||||||||
Sbjct: 110 cggagggagta 120
Score = 61.9 bits (31), Expect = 3e-09
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 48 ctactccctccgttcggaattacttgtcacaaaaatggatgtatcta 94
||||||||||||||||||| |||||||| ||||||| |||||||||
Sbjct: 121 ctactccctccgttcggaaatacttgtcctaaaaatgaatgtatcta 75
>RF00906;MIR1122;AY235466.1/780-656 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 75.8 bits (38), Expect = 2e-13
Identities = 44/46 (95%)
Strand = Plus / Minus
Query: 78 aaaaatggatgtatctacaactaaaatacatctagatacattcatt 123
||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 82 aaaaatggatgtatctagaactaaaatacatctagatacatccatt 37
>RF00906;MIR1122;AY235464.1/714-838 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 75.8 bits (38), Expect = 2e-13
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 78 aaaaatggatgtatctacaactaaaatacatctagatacattcatt 123
||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 44 aaaaatggatgtatctagaactaaaatacatctagatacatccatt 89
>RF00906;MIR1122;EU282564.1/350-463 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 114
Score = 75.8 bits (38), Expect = 2e-13
Identities = 56/62 (90%)
Strand = Plus / Minus
Query: 63 ggaattacttgtcacaaaaatggatgtatctacaactaaaatacatctagatacattcat 122
||||||||||||| | ||||||||||||||| |||| |||||||||||||||||| |||
Sbjct: 97 ggaattacttgtcgtagaaatggatgtatctagaactgaaatacatctagatacatccat 38
Query: 123 tt 124
||
Sbjct: 37 tt 36
>RF00906;MIR1122;EU282650.1/1397-1273 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 125
Score = 75.8 bits (38), Expect = 2e-13
Identities = 44/46 (95%)
Strand = Plus / Minus
Query: 78 aaaaatggatgtatctacaactaaaatacatctagatacattcatt 123
||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 82 aaaaatggatgtatctagaactaaaatacatctagatacatccatt 37
Score = 46.1 bits (23), Expect = 2e-04
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 48 ctactccctccgttcggaattacttgtcacaaaaatggatgtatcta 94
|||||||| |||| ||||| ||||||||| | ||||||||||||||
Sbjct: 4 ctactcccgccgtccggaaatacttgtcataggaatggatgtatcta 50
>RF00906;MIR1122;AM932682.1/94335-94221 4565:Triticum aestivum
(bread wheat)
Length = 115
Score = 73.8 bits (37), Expect = 8e-13
Identities = 76/89 (85%)
Strand = Plus / Minus
Query: 56 tccgttcggaattacttgtcacaaaaatggatgtatctacaactaaaatacatctagata 115
||||||| |||||||||||| || ||||||||||||||| |||| ||| | ||||||||
Sbjct: 104 tccgttccgaattacttgtcgcataaatggatgtatctagaactgaaaaatgtctagata 45
Query: 116 cattcattttttggacgagtaattccgaa 144
||| ||||| | ||| ||||||||||||
Sbjct: 44 catccatttctacgacaagtaattccgaa 16
Score = 61.9 bits (31), Expect = 3e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 52 tccctccgttcggaattacttgtcacaaaaatggatgtatcta 94
|||||||||||||||||||||||| | |||||||||||||||
Sbjct: 8 tccctccgttcggaattacttgtcgtagaaatggatgtatcta 50
>RF00906;MIR1122;DQ889708.1/343-221 4565:Triticum aestivum (bread
wheat)
Length = 123
Score = 71.9 bits (36), Expect = 3e-12
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 49 tactccctccgttcggaattacttgtcacaaaaatggatgtatctacaactaaaatacat 108
||||||||| ||||||||||||||| | |||||| ||||||||| |||||||| | |
Sbjct: 119 tactccctctattcggaattacttgtttcgaaaatgaatgtatctagaactaaaactcgt 60
Query: 109 ctagatacattcattttttggacgagtaattccgaa 144
|||||||||| ||||| | ||| ||||||||||||
Sbjct: 59 ctagatacatccatttctgcgacaagtaattccgaa 24
Score = 54.0 bits (27), Expect = 8e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 60 ttcggaattacttgtcacaaaaatggatgtatcta 94
|||||||||||||||| || |||||||||||||||
Sbjct: 24 ttcggaattacttgtcgcagaaatggatgtatcta 58
>RF00906;MIR1122;AF325196.1/33744-33620 4565:Triticum aestivum
(bread wheat)
Length = 125
Score = 69.9 bits (35), Expect = 1e-11
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 78 aaaaatggatgtatctacaactaaaatacatctagatacattcattt 124
||||||||||||||||| || ||||||||||||||||| ||||||||
Sbjct: 44 aaaaatggatgtatctagaattaaaatacatctagatagattcattt 90
>RF00906;MIR1122;AY013754.1/1932-2046 37682:Aegilops tauschii
Length = 115
Score = 69.9 bits (35), Expect = 1e-11
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 80 aaatggatgtatctacaactaaaatacatctagatacat 118
||||||||||||||| |||||||||||||||||||||||
Sbjct: 36 aaatggatgtatctagaactaaaatacatctagatacat 74
Score = 52.0 bits (26), Expect = 3e-06
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 49 tactccctccgttcggaattacttgtcacaaaaatggatgtatcta 94
|||||||||||||| |||||||||||| || |||||||||||||
Sbjct: 111 tactccctccgttccgaattacttgtcgcacgtatggatgtatcta 66
>RF00906;MIR1122;AF548379.1/5968-6092 37682:Aegilops tauschii
Length = 125
Score = 69.9 bits (35), Expect = 1e-11
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 78 aaaaatggatgtatctacaactaaaatacatctagatacattcattt 124
||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct: 82 aaaaatggatgtatctagaactaaaatacgtctagatacatccattt 36
Score = 44.1 bits (22), Expect = 7e-04
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 49 tactccctccgttcggaattacttgtcacaaaaatggatgtatcta 94
|||||||||||| || ||||| ||||| | |||||||||||||||
Sbjct: 5 tactccctccgtccgaaattatttgtcggagaaatggatgtatcta 50
>RF00906;MIR1122;AF474373.1/52258-52134 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 67.9 bits (34), Expect = 5e-11
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 78 aaaaatggatgtatctacaactaaaatacatctagatacattcatt 123
|||||||||| |||||| ||||||||||||||||||||||| ||||
Sbjct: 82 aaaaatggatatatctagaactaaaatacatctagatacatccatt 37
>RF00906;MIR1122;AF459085.1/1867-1743 4513:Hordeum vulgare
Length = 125
Score = 65.9 bits (33), Expect = 2e-10
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 80 aaatggatgtatctacaactaaaatacatctagatacattcattt 124
||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct: 46 aaatggatgtatctagaactaaaatacgtctagatacatccattt 90
Score = 60.0 bits (30), Expect = 1e-08
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 49 tactccctccgttcggaattacttgtcacaaaaatggatgtatcta 94
|||||||||||| |||||||| |||||| | |||||||||||||||
Sbjct: 121 tactccctccgtccggaattatttgtcatagaaatggatgtatcta 76
>RF00906;MIR1122;BT009295.1/1923-1809 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 63.9 bits (32), Expect = 8e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 79 aaaatggatgtatctacaactaaaatacatctagatacat 118
|||||||||||||||| ||||||||||||||| |||||||
Sbjct: 35 aaaatggatgtatctagaactaaaatacatcttgatacat 74
>RF00906;MIR1122;AB095006.1/1949-2072 4565:Triticum aestivum (bread
wheat)
Length = 124
Score = 63.9 bits (32), Expect = 8e-10
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 78 aaaaatggatgtatctacaactaaaatacatctagatacattcatttt 125
|||||||||||||| || ||||||||||| |||| |||||||||||||
Sbjct: 44 aaaaatggatgtatgtagaactaaaatacgtctaaatacattcatttt 91
>RF00906;MIR1122;AY951945.1/36609-36485 4568:Triticum monococcum
Length = 125
Score = 63.9 bits (32), Expect = 8e-10
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 78 aaaaatggatgtatctacaactaaaatacatctagataca 117
||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 82 aaaaatgaatgtatctagaactaaaatacatctagataca 43
>RF00906;MIR1122;FJ225151.1/115-1 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 61.9 bits (31), Expect = 3e-09
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 86 atgtatctacaactaaaatacatctagatacattcattttttggacgagta 136
||||||||| |||||||||||||||||||||||| ||| || ||||||||
Sbjct: 47 atgtatctagaactaaaatacatctagatacattaattcttccgacgagta 97
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 50 actccctccgttcggaattacttgtc 75
||||||||||||||||| ||||||||
Sbjct: 1 actccctccgttcggaaatacttgtc 26
>RF00906;MIR1122;AB238931.1/2749-2883 4568:Triticum monococcum
Length = 135
Score = 61.9 bits (31), Expect = 3e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 76 acaaaaatggatgtatctacaactaaaatacatctagatacat 118
||||||| |||||||| || |||||||||||||||||||||||
Sbjct: 42 acaaaaagggatgtatttagaactaaaatacatctagatacat 84
>RF00906;MIR1122;EU159422.1/10160-10283 37682:Aegilops tauschii
Length = 124
Score = 61.9 bits (31), Expect = 3e-09
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 78 aaaaatggatgtatctacaactaaaatacatctagatacattcattt 124
||||||||||||||||| || |||||||| ||||||||||| |||||
Sbjct: 82 aaaaatggatgtatctagaagtaaaatacgtctagatacatccattt 36
Score = 44.1 bits (22), Expect = 7e-04
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 49 tactccctccgttcggaattacttgtcacaaaaatggatgtatcta 94
|||| ||| |||||||| ||||||||| | |||||||||||||||
Sbjct: 5 tactgcctacgttcggatatacttgtcagagaaatggatgtatcta 50
>RF00906;MIR1122;DQ245819.1/394-508 4577:Zea mays
Length = 115
Score = 60.0 bits (30), Expect = 1e-08
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 54 cctccgttcggaattacttgtcacaaaaatggatgtatctacaactaaaatacatctaga 113
|||||||| |||||||| |||| | ||||||| |||| || ||||||||||||||||||
Sbjct: 10 cctccgtttggaattacctgtctcggaaatggacgtatttagaactaaaatacatctaga 69
Query: 114 ta 115
||
Sbjct: 70 ta 71
Score = 44.1 bits (22), Expect = 7e-04
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 53 ccctccgttcggaattacttgtcacaaaaatggatgtatcta 94
||||||||||||||||| ||||| | ||||| ||| ||||||
Sbjct: 107 ccctccgttcggaattaattgtcgcgaaaatagatatatcta 66
>RF00906;MIR1122;X13580.1/135-24 4565:Triticum aestivum (bread
wheat)
Length = 112
Score = 60.0 bits (30), Expect = 1e-08
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 65 aattacttgtcacaaaaatggatgtatctacaactaaaatacatctagatacat 118
||||||| ||| || ||||| ||||||||| |||||||||||| ||||||||||
Sbjct: 95 aattactcgtcgcagaaatgaatgtatctagaactaaaatacaactagatacat 42
>RF00906;MIR1122;AY368673.1/196592-196716 4571:Triticum turgidum
Length = 125
Score = 60.0 bits (30), Expect = 1e-08
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 78 aaaaatggatgtatctacaactaaaatacatctagatacattcatt 123
||||||||||||||||| ||||||||||| ||||| ||||| ||||
Sbjct: 44 aaaaatggatgtatctagaactaaaatacgtctaggtacatccatt 89
>RF00906;MIR1122;AF474373.1/14703-14580 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 60.0 bits (30), Expect = 1e-08
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 81 aatggatgtatctacaactaaaatacatctagatacattcattttttggacgagtaattc 140
|||||||||||| | |||||||||| || ||||||||||||| ||| |||| |||| |||
Sbjct: 46 aatggatgtatccataactaaaataaatttagatacattcatctttaggacaagtatttc 105
Query: 141 cg 142
||
Sbjct: 106 cg 107
>RF00906;MIR1122;EU282737.1/1022-902 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 121
Score = 60.0 bits (30), Expect = 1e-08
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 49 tactccctccgttcggaattacttgtcacaaaaatggatgtatcta 94
|||||||||||| |||||||||||| || ||||||||||| |||||
Sbjct: 5 tactccctccgtccggaattacttgacataaaaatggatgcatcta 50
Score = 60.0 bits (30), Expect = 1e-08
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 49 tactccctccgttcggaattacttgtcacaaaaatgga 86
|||||||||||| |||||||||||||||| ||||||||
Sbjct: 121 tactccctccgtccggaattacttgtcaccaaaatgga 84
>RF00906;MIR1122;EU812563.1/59152-59276 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 60.0 bits (30), Expect = 1e-08
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 78 aaaaatggatgtatctacaactaaaatacatctagatacattcatt 123
||||||| ||||||||| |||||||||| |||||||||||| ||||
Sbjct: 44 aaaaatgaatgtatctagaactaaaatatatctagatacatacatt 89
>RF00906;MIR1122;AF022725.1/11631-11507 4513:Hordeum vulgare
Length = 125
Score = 60.0 bits (30), Expect = 1e-08
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 78 aaaaatggatgtatctacaactaaaatacatctagatacattcatt 123
||||||||||||||||| || || ||||||||||||||||| ||||
Sbjct: 44 aaaaatggatgtatctagaattataatacatctagatacatacatt 89
>RF00906;MIR1122;EU096089.1/6299-6422 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 124
Score = 58.0 bits (29), Expect = 5e-08
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 83 tggatgtatctacaactaaaatacatctagatacattcattttttggacgagtaattccg 142
|||||||||||| |||||||||| ||||||||||||||| | | |||| |||| |||||
Sbjct: 48 tggatgtatctataactaaaataagtctagatacattcatctctaggacaagtatttccg 107
Query: 143 aaagaagggagta 155
| | ||||||||
Sbjct: 108 gacggagggagta 120
>RF00906;MIR1122;DQ445241.1/4641-4518 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 124
Score = 58.0 bits (29), Expect = 5e-08
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 79 aaaatggatgtatctacaactaaaatacatctagatacattcattttttggacgagtaat 138
|||||||||||||||| || ||||||| ||||||||||| | |||| |||| |||| |
Sbjct: 81 aaaatggatgtatctataagtaaaataagtctagatacatctacttttaggacaagtatt 22
Query: 139 tccgaaagaagggagta 155
| |||| ||||||||||
Sbjct: 21 ttcgaacgaagggagta 5
Score = 48.1 bits (24), Expect = 5e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 49 tactccctccgttcggaattacttgtcacaaaaatg 84
|||||||||||| ||||| ||||||||| |||||||
Sbjct: 120 tactccctccgtccggaaatacttgtcataaaaatg 85
>RF00906;MIR1122;DQ145552.1/668-803 4573:Aegilops speltoides
Length = 136
Score = 58.0 bits (29), Expect = 5e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 86 atgtatctacaactaaaatacatctagatacat 118
||||||||| |||||||||||||||||||||||
Sbjct: 52 atgtatctagaactaaaatacatctagatacat 84
Score = 54.0 bits (27), Expect = 8e-07
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 49 tactccctccgttcggaattacttgtcacaaaaatggat 87
|||||||||||| ||||| |||||||||| |||||||||
Sbjct: 132 tactccctccgtccggaaatacttgtcaccaaaatggat 94
>RF00906;MIR1122;AB298185.1/18759-18893 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 87 tgtatctacaactaaaatacatctagatacat 118
|||||||| |||||||||||||||||||||||
Sbjct: 53 tgtatctagaactaaaatacatctagatacat 84
>RF00906;MIR1122;AY853252.1/156228-156351 4513:Hordeum vulgare
Length = 124
Score = 56.0 bits (28), Expect = 2e-07
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 81 aatggatgtatctacaactaaaatacatctagatacattcattttttggacgagta 136
|||||||||||||| |||||||||| ||||||| ||| ||||||| |||| ||||
Sbjct: 79 aatggatgtatctataactaaaataagtctagattcatccatttttaggacaagta 24
>RF00906;MIR1122;AY951945.1/93583-93458 4568:Triticum monococcum
Length = 126
Score = 54.0 bits (27), Expect = 8e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 80 aaatggatgtatctacaactaaaatacatct 110
||||||||||||||| |||||||||||||||
Sbjct: 46 aaatggatgtatctagaactaaaatacatct 76
Score = 46.1 bits (23), Expect = 2e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 49 tactccctccgttcggaattacttgtcacaaaaatggat 87
|||||||||||| ||||| |||||||| || ||||||||
Sbjct: 5 tactccctccgtccggaaatacttgtcgcagaaatggat 43
>RF00906;MIR1122;EF081030.1/6132-5986 4572:Triticum urartu
Length = 147
Score = 54.0 bits (27), Expect = 8e-07
Identities = 75/91 (82%)
Strand = Plus / Minus
Query: 65 aattacttgtcacaaaaatggatgtatctacaactaaaatacatctagatacattcattt 124
||||||| ||| || ||||| || |||||| ||||||||||||| || ||| |||||| |
Sbjct: 95 aattactcgtcgcagaaatgaatatatctagaactaaaatacatttatatatattcatat 36
Query: 125 tttggacgagtaattccgaaagaagggagta 155
| ||| |||||||| ||| ||||||||||
Sbjct: 35 ctgtgacaagtaattcggaacgaagggagta 5
Score = 50.1 bits (25), Expect = 1e-05
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 49 tactccctccgttcggaattacttgtcacaaaaatggatgtatct 93
|||||||||||||| |||||||||||| || ||||||||||||
Sbjct: 143 tactccctccgttccgaattacttgtcgcaggtatggatgtatct 99
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 49 tactccctccgttcggaattacttgtcaca 78
|||||||| ||||| |||||||||||||||
Sbjct: 5 tactcccttcgttccgaattacttgtcaca 34
>RF00906;MIR1122;AY146587.2/148630-148744 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 115
Score = 54.0 bits (27), Expect = 8e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 80 aaatggatgtatctacaactaaaatacatctagatacattcat 122
||||| ||||||||| || ||||||| ||||||||||||||||
Sbjct: 36 aaatgaatgtatctagaattaaaataaatctagatacattcat 78
>RF00906;MIR1122;DQ904440.1/75385-75530 52163:Triticum monococcum
subsp. aegilopoides
Length = 146
Score = 54.0 bits (27), Expect = 8e-07
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 76 acaaaaatggatgtatctacaactaaaatacatctagatacat 118
||||||| ||||||| || |||||||||||||||||||||||
Sbjct: 105 acaaaaagagatgtatgtagaactaaaatacatctagatacat 63
>RF00906;MIR1122;AY641411.1/11483-11599 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 117
Score = 54.0 bits (27), Expect = 8e-07
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 52 tccctccgttcggaattacttgtcacaaaaatggatgtatcta 94
|||||| || |||||||||||| | ||||||||||||||||||
Sbjct: 110 tccctctgtccggaattacttgccgcaaaaatggatgtatcta 68
Score = 48.1 bits (24), Expect = 5e-05
Identities = 43/48 (89%), Gaps = 1/48 (2%)
Strand = Plus / Plus
Query: 80 aaatggatgtatctacaact-aaaatacatctagatacattcattttt 126
||||||||||||||| |||| ||||| | ||||||||||| |||||||
Sbjct: 37 aaatggatgtatctagaactaaaaatgcgtctagatacatccattttt 84
>RF00906;MIR1122;AY951945.1/37511-37377 4568:Triticum monococcum
Length = 135
Score = 52.0 bits (26), Expect = 3e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 85 gatgtatctacaactaaaatacatctagatacattcattttt 126
|||||| ||| |||||||||| |||||||||||||| |||||
Sbjct: 51 gatgtacctagaactaaaatatatctagatacattctttttt 92
>RF00906;MIR1122;AF254799.1/60623-60744 4513:Hordeum vulgare
Length = 122
Score = 52.0 bits (26), Expect = 3e-06
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 49 tactccctccgttcggaattacttgtcacaaaaatggatgtatcta 94
||||||||| | ||||||||||||||| |||||| ||||||||||
Sbjct: 118 tactccctctctccggaattacttgtcataaaaatagatgtatcta 73
>RF00906;MIR1122;DQ445236.1/8526-8403 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 124
Score = 52.0 bits (26), Expect = 3e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 81 aatggatgtatctacaactaaaatacatctagatacattcat 122
|||||||||||||| |||||||||| |||||||| ||||||
Sbjct: 46 aatggatgtatctataactaaaataagtctagatatattcat 87
>RF00906;MIR1122;AF521177.1/9890-9767 4513:Hordeum vulgare
Length = 124
Score = 52.0 bits (26), Expect = 3e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 81 aatggatgtatctacaactaaaatacatctagatacattcat 122
||||||||||||||||| || |||| |||||||||||||||
Sbjct: 46 aatggatgtatctacaattagaataagtctagatacattcat 87
>RF00906;MIR1122;DQ537336.1/120340-120474 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 50.1 bits (25), Expect = 1e-05
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 78 aaaaatggatgtatctacaactaaaatacatctagatacat 118
||||| |||| |||||| |||||| ||||||||||||||||
Sbjct: 92 aaaaaaggatatatctaaaactaatatacatctagatacat 52
>RF00906;MIR1122;AM932683.1/23310-23434 4565:Triticum aestivum
(bread wheat)
Length = 125
Score = 50.1 bits (25), Expect = 1e-05
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 48 ctactccctccgttcggaattacttgtcacaaaaatg 84
||||||||||||||| ||| |||||||| ||||||||
Sbjct: 122 ctactccctccgttcagaaatacttgtcgcaaaaatg 86
>RF00906;MIR1122;DJ023136.1/240-116 4513:Hordeum vulgare
Length = 125
Score = 50.1 bits (25), Expect = 1e-05
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 80 aaatggatgtatctacaactaaaatacatctagatacattcattttttggacgagta 136
||||| |||||| || ||||||||| ||||||||||||| |||| ||| ||| ||||
Sbjct: 46 aaatgaatgtatttagaactaaaatgcatctagatacatccattctttcgacaagta 102
Score = 44.1 bits (22), Expect = 7e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 54 cctccgttcggaattacttgtcacaaaaatggat 87
||||||| ||||||||||| || |||||||||||
Sbjct: 10 cctccgtccggaattacttatcgcaaaaatggat 43
>RF00906;MIR1122;AF532104.1/14817-14951 37682:Aegilops tauschii
Length = 135
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 86 atgtatctacaactaaaatacatctagatacat 118
||||||||| || ||||||||||||||||||||
Sbjct: 52 atgtatctagaattaaaatacatctagatacat 84
>RF00906;MIR1122;AY663392.1/94965-94831 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 48.1 bits (24), Expect = 5e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 85 gatgtatctacaactaaaatacatctagatacattc 120
|||||| ||| |||||||||||||||| ||||||||
Sbjct: 51 gatgtacctagaactaaaatacatctatatacattc 86
>RF00906;MIR1122;EF028786.1/1091-968 4565:Triticum aestivum (bread
wheat)
Length = 124
Score = 48.1 bits (24), Expect = 5e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 79 aaaatggatgtatctacaactaaaatacatctagatacat 118
|||||| |||||| || ||||||||||| |||||||||||
Sbjct: 81 aaaatgaatgtatttagaactaaaatacgtctagatacat 42
>RF00906;MIR1122;AY137517.1/112-234 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 123
Score = 48.1 bits (24), Expect = 5e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 85 gatgtatctacaactaaaatacatctagatacattcattt 124
||||||| || |||||||||| |||||||||||||||||
Sbjct: 49 gatgtatgtataactaaaataagtctagatacattcattt 88
>RF00906;MIR1122;AF459639.1/191055-190921 4568:Triticum monococcum
Length = 135
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 49 tactccctccgttcggaattacttgtc 75
|||||||||||||| ||||||||||||
Sbjct: 5 tactccctccgttccgaattacttgtc 31
>RF00906;MIR1122;DQ123819.1/2832-2966 4571:Triticum turgidum
Length = 135
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 49 tactccctccgttcggaattacttgtc 75
|||||||||||||| ||||||||||||
Sbjct: 5 tactccctccgttctgaattacttgtc 31
>RF00906;MIR1122;AY533103.1/332-199 4565:Triticum aestivum (bread
wheat)
Length = 134
Score = 46.1 bits (23), Expect = 2e-04
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 76 acaaaaatggatgtatctacaactaaaatacatctagatacat 118
||||||| ||| |||||| |||||||||||||||| ||||||
Sbjct: 93 acaaaaagagatatatctagaactaaaatacatctaaatacat 51
>RF00906;MIR1122;AY963808.1/10854-10720 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 46.1 bits (23), Expect = 2e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 49 tactccctccgttcggaattacttgtcacaaaaatggat 87
|||||||||||| ||||| ||||||||| |||||||||
Sbjct: 5 tactccctccgtccggaaatacttgtcatcaaaatggat 43
Score = 44.1 bits (22), Expect = 7e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 85 gatgtatctacaactaaaatacatctagatacat 118
|||||||||| |||||||||| |||||||||||
Sbjct: 85 gatgtatctagaactaaaatatgtctagatacat 52
>RF00906;MIR1122;DQ355219.1/57-171 4588:Lophopyrum elongatum
Length = 115
Score = 46.1 bits (23), Expect = 2e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 80 aaatggatgtatctacaactaaaatacatctagatacat 118
||||||||||||||| ||| |||||| |||||||||||
Sbjct: 36 aaatggatgtatctagcactgaaatacgtctagatacat 74
>RF00906;MIR1122;AF521177.1/27342-27466 4513:Hordeum vulgare
Length = 125
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 88 gtatctacaactaaaatacatctagatacattcat 122
||||||| || ||||||| ||||||||||||||||
Sbjct: 72 gtatctataattaaaataaatctagatacattcat 38
>RF00906;MIR1122;EU730900.1/55128-55253 15368:Brachypodium
distachyon
Length = 126
Score = 44.1 bits (22), Expect = 7e-04
Identities = 38/42 (90%), Gaps = 1/42 (2%)
Strand = Plus / Minus
Query: 78 aaaaatggatgtatctaca-actaaaatacatctagatacat 118
||||||||| ||||||| | |||||||||| |||||||||||
Sbjct: 83 aaaaatggacgtatctatatactaaaatacgtctagatacat 42
>RF00906;MIR1122;EU730895.1/43836-43713 15368:Brachypodium
distachyon
Length = 124
Score = 44.1 bits (22), Expect = 7e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 77 caaaaatggatgtatctacaactaaaatacatctagatacat 118
|||| ||||||||||||| | |||||| |||||||||||||
Sbjct: 42 caaatatggatgtatctatacctaaaaagcatctagatacat 83
