miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY491681.1/88752-88866 4568:Triticum monococcum
Length = 115
Score = 147 bits (74), Expect = 4e-35
Identities = 94/101 (93%)
Strand = Plus / Plus
Query: 8 gtactccctccgttcggaattacttgtctcggaaatggatgtatctaaaactgaaataca 67
||||||||||| ||||||||||||||||||||| ||||||||||||| |||| |||||||
Sbjct: 4 gtactccctccattcggaattacttgtctcggatatggatgtatctagaactaaaataca 63
Query: 68 tctagatacattcatttccgcgacaagtaattcngaacgga 108
|||||||||||||||||| |||||||||||||| ||||||
Sbjct: 64 tctagatacattcatttctgcgacaagtaattccaaacgga 104
Score = 52.0 bits (26), Expect = 2e-06
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtctcggaaatggatgtatcta 54
|||||| |||||| ||||||||||||| | |||||| |||||||||
Sbjct: 111 tactccatccgtttggaattacttgtcgcagaaatgaatgtatcta 66
>RF00906;MIR1122;EU399684.1/4485-4371 4550:Secale cereale (rye)
Length = 115
Score = 131 bits (66), Expect = 2e-30
Identities = 92/101 (91%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtctcggaaatggatgtatctaaaactgaaatacat 68
|||||||||||||||||||||||||||||| |||||||| |||||| |||| |||||| |
Sbjct: 5 tactccctccgttcggaattacttgtctcgaaaatggatctatctagaactaaaatacgt 64
Query: 69 ctagatacattcatttccgcgacaagtaattcngaacggag 109
|||||||||| |||||| | |||||||||||| ||||||||
Sbjct: 65 ctagatacatccatttctgagacaagtaattccgaacggag 105
Score = 87.7 bits (44), Expect = 3e-17
Identities = 47/48 (97%)
Strand = Plus / Minus
Query: 7 agtactccctccgttcggaattacttgtctcggaaatggatgtatcta 54
||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 113 agtactccctccgttcggaattacttgtctcagaaatggatgtatcta 66
>RF00906;MIR1122;EU117148.1/1866-1980 4571:Triticum turgidum
Length = 115
Score = 119 bits (60), Expect = 9e-27
Identities = 89/99 (89%)
Strand = Plus / Minus
Query: 11 ctccctccgttcggaattacttgtctcggaaatggatgtatctaaaactgaaatacatct 70
|||||||||||| ||||||| ||||| ||||||||| ||||||||||| ||||||||||
Sbjct: 109 ctccctccgttccaaattactcgtctcagaaatggatatatctaaaactaaaatacatct 50
Query: 71 agatacattcatttccgcgacaagtaattcngaacggag 109
|||||||| |||||| ||||| |||||||| ||||||||
Sbjct: 49 agatacatccatttctgcgacgagtaattcagaacggag 11
Score = 60.0 bits (30), Expect = 7e-09
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtctcggaaatggatgtatcta 54
|||||||||||||| |||||||| ||| | ||||||||||||||||
Sbjct: 5 tactccctccgttctgaattactcgtcgcagaaatggatgtatcta 50
>RF00906;MIR1122;AM932686.1/4713-4599 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 115 bits (58), Expect = 1e-25
Identities = 84/93 (90%)
Strand = Plus / Plus
Query: 17 ccgttcggaattacttgtctcggaaatggatgtatctaaaactgaaatacatctagatac 76
||||||||||||| |||||||| |||| |||||||||| |||| |||||| |||||||||
Sbjct: 13 ccgttcggaattatttgtctcgaaaatagatgtatctagaactaaaatacgtctagatac 72
Query: 77 attcatttccgcgacaagtaattcngaacggag 109
|| ||||| ||||||||||||||| ||||||||
Sbjct: 73 atccattttcgcgacaagtaattccgaacggag 105
Score = 75.8 bits (38), Expect = 1e-13
Identities = 44/46 (95%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtctcggaaatggatgtatcta 54
||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 111 tactccctccgttcggaattacttgtcgcgaaaatggatgtatcta 66
>RF00906;MIR1122;AY146587.2/110938-111052 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 115
Score = 109 bits (55), Expect = 9e-24
Identities = 90/102 (88%)
Strand = Plus / Plus
Query: 8 gtactccctccgttcggaattacttgtctcggaaatggatgtatctaaaactgaaataca 67
||||||||||||||| |||||||||||||| ||||||||||||||| |||| |||||
Sbjct: 4 gtactccctccgttccgaattacttgtctcaaaaatggatgtatctagaactaaaatatg 63
Query: 68 tctagatacattcatttccgcgacaagtaattcngaacggag 109
||||||||||| ||||| ||||||||||||| ||||||||
Sbjct: 64 tctagatacatccattttttcgacaagtaattcagaacggag 105
Score = 52.0 bits (26), Expect = 2e-06
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtctcggaaatggatgtatcta 54
|||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 111 tactccctccgttctgaattacttgtcgaaaaaatggatgtatcta 66
>RF00906;MIR1122;EU282564.1/350-463 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 114
Score = 107 bits (54), Expect = 3e-23
Identities = 69/74 (93%)
Strand = Plus / Minus
Query: 23 ggaattacttgtctcggaaatggatgtatctaaaactgaaatacatctagatacattcat 82
||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 97 ggaattacttgtcgtagaaatggatgtatctagaactgaaatacatctagatacatccat 38
Query: 83 ttccgcgacaagta 96
||||||||||||||
Sbjct: 37 ttccgcgacaagta 24
Score = 56.0 bits (28), Expect = 1e-07
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 7 agtactccctccgttcggaattacttgtctcggaaatggatgtatcta 54
||||||||||| || | ||| |||||||| ||||||||||||||||||
Sbjct: 3 agtactccctctgtcccgaaatacttgtcgcggaaatggatgtatcta 50
>RF00906;MIR1122;CT009625.1/8885-8999 37682:Aegilops tauschii
Length = 115
Score = 107 bits (54), Expect = 3e-23
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 8 gtactccctccgttcggaattacttgtctcggaaatggatgtatctaaaactgaaataca 67
|||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||
Sbjct: 4 gtactccctccgttcggaattacttgtcataaaaatggatgtatctataactaaaataca 63
Query: 68 tctagatacattcatttc 85
||||||||||||||||||
Sbjct: 64 tctagatacattcatttc 81
>RF00906;MIR1122;AM932682.1/94335-94221 4565:Triticum aestivum
(bread wheat)
Length = 115
Score = 101 bits (51), Expect = 2e-21
Identities = 89/102 (87%)
Strand = Plus / Minus
Query: 16 tccgttcggaattacttgtctcggaaatggatgtatctaaaactgaaatacatctagata 75
||||||| |||||||||||| | ||||||||||||||| |||||||| | ||||||||
Sbjct: 104 tccgttccgaattacttgtcgcataaatggatgtatctagaactgaaaaatgtctagata 45
Query: 76 cattcatttccgcgacaagtaattcngaacggagagaataca 117
||| |||||| ||||||||||||| |||||||| |||||||
Sbjct: 44 catccatttctacgacaagtaattccgaacggagggaataca 3
Score = 61.9 bits (31), Expect = 2e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 12 tccctccgttcggaattacttgtctcggaaatggatgtatcta 54
|||||||||||||||||||||||| ||||||||||||||||
Sbjct: 8 tccctccgttcggaattacttgtcgtagaaatggatgtatcta 50
>RF00906;MIR1122;EF540321.1/236564-236678 4571:Triticum turgidum
Length = 115
Score = 99.6 bits (50), Expect = 8e-21
Identities = 94/109 (86%)
Strand = Plus / Minus
Query: 8 gtactccctccgttcggaattacttgtctcggaaatggatgtatctaaaactgaaataca 67
||||||||||||||| ||||||| ||| | |||||||||||||||| |||| |||||||
Sbjct: 112 gtactccctccgttccaaattactcgtcgcagaaatggatgtatctataactaaaataca 53
Query: 68 tctagatacattcatttccgcgacaagtaattcngaacggagagaatac 116
||||||||||| ||||| ||| |||||||| |||||||| ||||||
Sbjct: 52 tctagatacatccatttattggacgagtaattcggaacggagggaatac 4
>RF00906;MIR1122;DQ245819.1/394-508 4577:Zea mays
Length = 115
Score = 97.6 bits (49), Expect = 3e-20
Identities = 84/96 (87%)
Strand = Plus / Plus
Query: 14 cctccgttcggaattacttgtctcggaaatggatgtatctaaaactgaaatacatctaga 73
|||||||| |||||||| ||||||||||||||| |||| || |||| |||||||||||||
Sbjct: 10 cctccgtttggaattacctgtctcggaaatggacgtatttagaactaaaatacatctaga 69
Query: 74 tacattcatttccgcgacaagtaattcngaacggag 109
|| || |||| |||||||| |||||| ||||||||
Sbjct: 70 tatatctattttcgcgacaattaattccgaacggag 105
Score = 50.1 bits (25), Expect = 7e-06
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 6 tagtactccctccgttcggaattacttgtctcggaaatggatgtatcta 54
|||||| ||||||||||||||||| ||||| || |||| ||| ||||||
Sbjct: 114 tagtaccccctccgttcggaattaattgtcgcgaaaatagatatatcta 66
>RF00906;MIR1122;DQ889708.1/343-221 4565:Triticum aestivum (bread
wheat)
Length = 123
Score = 89.7 bits (45), Expect = 8e-18
Identities = 83/96 (86%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtctcggaaatggatgtatctaaaactgaaatacat 68
||||||||| ||||||||||||||| ||| ||||| ||||||||| |||| ||| | |
Sbjct: 119 tactccctctattcggaattacttgtttcgaaaatgaatgtatctagaactaaaactcgt 60
Query: 69 ctagatacattcatttccgcgacaagtaattcngaa 104
|||||||||| |||||| |||||||||||||| |||
Sbjct: 59 ctagatacatccatttctgcgacaagtaattccgaa 24
Score = 54.0 bits (27), Expect = 4e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 20 ttcggaattacttgtctcggaaatggatgtatcta 54
|||||||||||||||| | ||||||||||||||||
Sbjct: 24 ttcggaattacttgtcgcagaaatggatgtatcta 58
>RF00906;MIR1122;AB298184.1/15044-14931 4565:Triticum aestivum
(bread wheat)
Length = 114
Score = 83.8 bits (42), Expect = 5e-16
Identities = 63/70 (90%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtctcggaaatggatgtatctaaaactgaaatacat 68
|||||||||||||| ||||||| ||| | |||||||||||||||| |||| ||||||||
Sbjct: 110 tactccctccgttccaaattactcgtcgctgaaatggatgtatctagaactaaaatacat 51
Query: 69 ctagatacat 78
||||||||||
Sbjct: 50 ctagatacat 41
Score = 46.1 bits (23), Expect = 1e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 68 tctagatacattcatttccgcgacaagtaattcngaacggag 109
||||||||||| |||||| ||||| ||||||| ||||||||
Sbjct: 63 tctagatacatccatttcagcgacgagtaatttggaacggag 104
>RF00906;MIR1122;AY013754.1/1932-2046 37682:Aegilops tauschii
Length = 115
Score = 83.8 bits (42), Expect = 5e-16
Identities = 74/85 (87%)
Strand = Plus / Plus
Query: 25 aattacttgtctcggaaatggatgtatctaaaactgaaatacatctagatacattcattt 84
||||||| ||| | |||||||||||||||| |||| |||||||||||||||||| |||
Sbjct: 21 aattactcgtcgctgaaatggatgtatctagaactaaaatacatctagatacatccatac 80
Query: 85 ccgcgacaagtaattcngaacggag 109
|||||||||||||| ||||||||
Sbjct: 81 gtgcgacaagtaattcggaacggag 105
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 5 gtagtactccctccgttcggaattacttgtc 35
|||||||||||||||||| ||||||||||||
Sbjct: 115 gtagtactccctccgttccgaattacttgtc 85
>RF00906;MIR1122;BT009606.1/1324-1200 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 77.8 bits (39), Expect = 3e-14
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 40 aaatggatgtatctaaaactgaaatacatctagatacattcatttccgcgacaagtaatt 99
||||||||||||||| || | ||||||||||||||||||||||||| ||| |||||||
Sbjct: 46 aaatggatgtatctacaattaaaatacatctagatacattcatttcttggacgagtaatt 105
Query: 100 cngaacggag 109
| ||||||||
Sbjct: 106 ctgaacggag 115
Score = 44.1 bits (22), Expect = 4e-04
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtctcggaaatggatgtatcta 54
|||||||||||||| |||||||| ||| |||||| |||||||||
Sbjct: 121 tactccctccgttcagaattactcgtccaagaaatgaatgtatcta 76
>RF00906;MIR1122;AY235466.1/780-656 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 77.8 bits (39), Expect = 3e-14
Identities = 62/70 (88%)
Strand = Plus / Minus
Query: 40 aaatggatgtatctaaaactgaaatacatctagatacattcatttccgcgacaagtaatt 99
||||||||||||||| |||| |||||||||||||||||| |||| || ||||||||| ||
Sbjct: 80 aaatggatgtatctagaactaaaatacatctagatacatccattcccccgacaagtattt 21
Query: 100 cngaacggag 109
| | ||||||
Sbjct: 20 ccggacggag 11
Score = 60.0 bits (30), Expect = 7e-09
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 5 gtagtactccctccgttcggaattacttgtctcggaaatggatgtatcta 54
|||||||||||||||| ||||| |||||||| || ||||||||||||||
Sbjct: 1 gtagtactccctccgtccggaaatacttgtcgggggaatggatgtatcta 50
>RF00906;MIR1122;AY235464.1/714-838 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 77.8 bits (39), Expect = 3e-14
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 40 aaatggatgtatctaaaactgaaatacatctagatacattcatttccgcgacaagtaatt 99
||||||||||||||| |||| |||||||||||||||||| |||| || ||||||||| ||
Sbjct: 46 aaatggatgtatctagaactaaaatacatctagatacatccattcccccgacaagtattt 105
Query: 100 cngaacggag 109
| | ||||||
Sbjct: 106 ccggacggag 115
Score = 52.0 bits (26), Expect = 2e-06
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtctcggaaatggatgtatcta 54
|||||||||||| ||||| |||||||| || ||||||||||||||
Sbjct: 121 tactccctccgtccggaaatacttgtcgggggaatggatgtatcta 76
>RF00906;MIR1122;BT009295.1/1923-1809 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 69.9 bits (35), Expect = 7e-12
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 40 aaatggatgtatctaaaactgaaatacatctagatacattcatttccgcgacaagtaatt 99
||||||||||||||| |||| |||||||||| ||||||| ||| |||||||||||||
Sbjct: 36 aaatggatgtatctagaactaaaatacatcttgatacatccataagtgcgacaagtaatt 95
Query: 100 cngaacggag 109
| ||||||||
Sbjct: 96 cggaacggag 105
>RF00906;MIR1122;AF325196.1/33744-33620 4565:Triticum aestivum
(bread wheat)
Length = 125
Score = 69.9 bits (35), Expect = 7e-12
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 40 aaatggatgtatctaaaactgaaatacatctagatacattcatttccgcgacaagtaatt 99
||||||||||||||| || | ||||||||||||||| ||||||||| ||||||||| ||
Sbjct: 46 aaatggatgtatctagaattaaaatacatctagatagattcatttctccgacaagtattt 105
Query: 100 cngaacggag 109
| | ||||||
Sbjct: 106 ccggacggag 115
>RF00906;MIR1122;CT009585.1/3980-4094 4565:Triticum aestivum
(bread wheat)
Length = 115
Score = 65.9 bits (33), Expect = 1e-10
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtctcggaaatggatgtatctaaaactgaaatacat 68
|||||||||||| | |||||||||||| |||||||||| |||| |||| ||||||||
Sbjct: 5 tactccctccgtccagaattacttgtcatcaaaatggatgtgtctagaactaaaatacat 64
Query: 69 ctagatacattcatttc 85
||||||| || ||||||
Sbjct: 65 ctagatatatccatttc 81
>RF00906;MIR1122;L41869.1/3010-3134 4513:Hordeum vulgare
Length = 125
Score = 65.9 bits (33), Expect = 1e-10
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 39 gaaatggatgtatctaaaactgaaatacatctagatacattcatt 83
|||||||||||||||| |||| |||||||||||||||||| ||||
Sbjct: 81 gaaatggatgtatctataactaaaatacatctagatacatccatt 37
>RF00906;MIR1122;AF459085.1/1867-1743 4513:Hordeum vulgare
Length = 125
Score = 63.9 bits (32), Expect = 5e-10
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 39 gaaatggatgtatctaaaactgaaatacatctagatacattcatttccgcgacaagtaat 98
|||||||||||||||| |||| |||||| ||||||||||| |||||| ||||| ||||
Sbjct: 45 gaaatggatgtatctagaactaaaatacgtctagatacatccatttctatgacaaataat 104
Query: 99 tcngaacggag 109
|| | ||||||
Sbjct: 105 tccggacggag 115
Score = 52.0 bits (26), Expect = 2e-06
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtctcggaaatggatgtatcta 54
|||||||||||| |||||||| ||||| ||||||||||||||||
Sbjct: 121 tactccctccgtccggaattatttgtcatagaaatggatgtatcta 76
>RF00906;MIR1122;EU282650.1/1397-1273 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 63.9 bits (32), Expect = 5e-10
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 40 aaatggatgtatctaaaactgaaatacatctagatacattcatt 83
||||||||||||||| |||| |||||||||||||||||| ||||
Sbjct: 80 aaatggatgtatctagaactaaaatacatctagatacatccatt 37
>RF00906;MIR1122;AF548379.1/5968-6092 37682:Aegilops tauschii
Length = 125
Score = 63.9 bits (32), Expect = 5e-10
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 40 aaatggatgtatctaaaactgaaatacatctagatacattcatttccgcgacaagtaatt 99
||||||||||||||| |||| |||||| ||||||||||| |||||| |||||| |||||
Sbjct: 80 aaatggatgtatctagaactaaaatacgtctagatacatccatttctccgacaaataatt 21
Score = 44.1 bits (22), Expect = 4e-04
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtctcggaaatggatgtatcta 54
|||||||||||| || ||||| ||||| ||||||||||||||||
Sbjct: 5 tactccctccgtccgaaattatttgtcggagaaatggatgtatcta 50
>RF00906;MIR1122;AF474373.1/52258-52134 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 56.0 bits (28), Expect = 1e-07
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 40 aaatggatgtatctaaaactgaaatacatctagatacattcatt 83
|||||||| |||||| |||| |||||||||||||||||| ||||
Sbjct: 80 aaatggatatatctagaactaaaatacatctagatacatccatt 37
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtc 35
|||||||||||| ||||||||||||||
Sbjct: 121 tactccctccgtccggaattacttgtc 95
>RF00906;MIR1122;AY951945.1/93583-93458 4568:Triticum monococcum
Length = 126
Score = 54.0 bits (27), Expect = 4e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 5 gtagtactccctccgttcggaattacttgtctcggaaatggat 47
|||||||||||||||| ||||| |||||||| | |||||||||
Sbjct: 1 gtagtactccctccgtccggaaatacttgtcgcagaaatggat 43
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 40 aaatggatgtatctaaaactgaaatacatct 70
||||||||||||||| |||| ||||||||||
Sbjct: 46 aaatggatgtatctagaactaaaatacatct 76
>RF00906;MIR1122;EF081030.1/6132-5986 4572:Triticum urartu
Length = 147
Score = 54.0 bits (27), Expect = 4e-07
Identities = 68/82 (82%)
Strand = Plus / Minus
Query: 25 aattacttgtctcggaaatggatgtatctaaaactgaaatacatctagatacattcattt 84
||||||| ||| | |||||| || |||||| |||| |||||||| || ||| |||||| |
Sbjct: 95 aattactcgtcgcagaaatgaatatatctagaactaaaatacatttatatatattcatat 36
Query: 85 ccgcgacaagtaattcngaacg 106
| | |||||||||||| |||||
Sbjct: 35 ctgtgacaagtaattcggaacg 14
Score = 52.0 bits (26), Expect = 2e-06
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 8 gtactccctccgttcggaattacttgtctcggaaatggatgtatct 53
||||||||||||||| |||||||||||| | | ||||||||||||
Sbjct: 144 gtactccctccgttccgaattacttgtcgcaggtatggatgtatct 99
>RF00906;MIR1122;DQ355219.1/57-171 4588:Lophopyrum elongatum
Length = 115
Score = 54.0 bits (27), Expect = 4e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 40 aaatggatgtatctaaaactgaaatacatctagatacat 78
||||||||||||||| |||||||||| |||||||||||
Sbjct: 36 aaatggatgtatctagcactgaaatacgtctagatacat 74
>RF00906;MIR1122;FJ225151.1/115-1 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 46 atgtatctaaaactgaaatacatctagatacatt 79
||||||||| |||| |||||||||||||||||||
Sbjct: 47 atgtatctagaactaaaatacatctagatacatt 80
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 10 actccctccgttcggaattacttgtc 35
||||||||||||||||| ||||||||
Sbjct: 1 actccctccgttcggaaatacttgtc 26
>RF00906;MIR1122;AY951945.1/36609-36485 4568:Triticum monococcum
Length = 125
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 40 aaatggatgtatctaaaactgaaatacatctagataca 77
||||| ||||||||| |||| |||||||||||||||||
Sbjct: 80 aaatgaatgtatctagaactaaaatacatctagataca 43
>RF00906;MIR1122;AY643843.1/31186-31309 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 52.0 bits (26), Expect = 2e-06
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 45 gatgtatctaaaactgaaatacatctagatacattcatttccgcgacaagtaattcngaa 104
|||||||||| |||| ||||| ||||||||||||||||| |||||||| ||| |||
Sbjct: 50 gatgtatctataactaaaataagtctagatacattcatttttaggacaagtatttccgaa 109
Query: 105 cggag 109
|||||
Sbjct: 110 cggag 114
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtc 35
|||||||||||||||||| ||||||||
Sbjct: 120 tactccctccgttcggaaatacttgtc 94
>RF00906;MIR1122;EU159422.1/10160-10283 37682:Aegilops tauschii
Length = 124
Score = 52.0 bits (26), Expect = 2e-06
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 40 aaatggatgtatctaaaactgaaatacatctagatacattcatttc 85
||||||||||||||| || | |||||| ||||||||||| ||||||
Sbjct: 80 aaatggatgtatctagaagtaaaatacgtctagatacatccatttc 35
>RF00906;MIR1122;AB095006.1/1949-2072 4565:Triticum aestivum
(bread wheat)
Length = 124
Score = 50.1 bits (25), Expect = 7e-06
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 40 aaatggatgtatctaaaactgaaatacatctagatacattcattt 84
|||||||||||| || |||| |||||| |||| ||||||||||||
Sbjct: 46 aaatggatgtatgtagaactaaaatacgtctaaatacattcattt 90
>RF00906;MIR1122;DQ123819.1/2832-2966 4571:Triticum turgidum
Length = 135
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 8 gtactccctccgttcggaattacttgtct 36
||||||||||||||| |||||||||||||
Sbjct: 4 gtactccctccgttctgaattacttgtct 32
>RF00906;MIR1122;DQ145552.1/668-803 4573:Aegilops speltoides
Length = 136
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 46 atgtatctaaaactgaaatacatctagatacat 78
||||||||| |||| ||||||||||||||||||
Sbjct: 52 atgtatctagaactaaaatacatctagatacat 84
>RF00906;MIR1122;X13580.1/135-24 4565:Triticum aestivum (bread
wheat)
Length = 112
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 68 tctagatacattcatttccgcgacaagtaatt 99
|||||||||||||||||| ||||| |||||||
Sbjct: 64 tctagatacattcatttctgcgacgagtaatt 95
>RF00906;MIR1122;AY146587.2/148630-148744 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 115
Score = 48.1 bits (24), Expect = 3e-05
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 39 gaaatggatgtatctaaaactgaaatacatctagatacattcat 82
|||||| ||||||||| || | ||||| ||||||||||||||||
Sbjct: 35 gaaatgaatgtatctagaattaaaataaatctagatacattcat 78
>RF00906;MIR1122;AF459639.1/191055-190921 4568:Triticum monococcum
Length = 135
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtct 36
|||||||||||||| |||||||||||||
Sbjct: 5 tactccctccgttccgaattacttgtct 32
>RF00906;MIR1122;AB298185.1/18759-18893 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 47 tgtatctaaaactgaaatacatctagatacat 78
|||||||| |||| ||||||||||||||||||
Sbjct: 53 tgtatctagaactaaaatacatctagatacat 84
>RF00906;MIR1122;AY368673.1/196592-196716 4571:Triticum turgidum
Length = 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 40 aaatggatgtatctaaaactgaaatacatctagatacattcatt 83
||||||||||||||| |||| |||||| ||||| ||||| ||||
Sbjct: 46 aaatggatgtatctagaactaaaatacgtctaggtacatccatt 89
>RF00906;MIR1122;EU096089.1/6299-6422 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 43 tggatgtatctaaaactgaaatacatctagatacattcat 82
|||||||||||| |||| ||||| |||||||||||||||
Sbjct: 48 tggatgtatctataactaaaataagtctagatacattcat 87
>RF00906;MIR1122;AY641411.1/11483-11599 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 117
Score = 48.1 bits (24), Expect = 3e-05
Identities = 66/79 (83%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 39 gaaatggatgtatctaaaactgaaa-tacatctagatacattcatttccgcgacaagtaa 97
|||||||||||||||| |||| ||| | | ||||||||||| ||||| ||| |||||||
Sbjct: 36 gaaatggatgtatctagaactaaaaatgcgtctagatacatccatttttgcggcaagtaa 95
Query: 98 ttcngaacggagagaatac 116
||| | || ||| ||||||
Sbjct: 96 ttccggacagagggaatac 114
>RF00906;MIR1122;DQ257569.1/307-193 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 115
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 45 gatgtatctaaaactgaaatacatctagatacattcattt 84
|||||||||| || ||||||||||||||||| |||||||
Sbjct: 41 gatgtatctagcaccgaaatacatctagatactttcattt 80
>RF00906;MIR1122;EU812563.1/59152-59276 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 40 aaatggatgtatctaaaactgaaatacatctagatacattcatt 83
||||| ||||||||| |||| ||||| |||||||||||| ||||
Sbjct: 46 aaatgaatgtatctagaactaaaatatatctagatacatacatt 89
>RF00906;MIR1122;AF022725.1/11631-11507 4513:Hordeum vulgare
Length = 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 40 aaatggatgtatctaaaactgaaatacatctagatacattcatt 83
||||||||||||||| || | ||||||||||||||||| ||||
Sbjct: 46 aaatggatgtatctagaattataatacatctagatacatacatt 89
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtc 35
|||||||||||| ||||||||||||||
Sbjct: 5 tactccctccgtccggaattacttgtc 31
>RF00906;MIR1122;EF028786.1/1091-968 4565:Triticum aestivum (bread
wheat)
Length = 124
Score = 46.1 bits (23), Expect = 1e-04
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 8 gtactccctccgttcggaattacttgtctcggaaatggatgtatcta 54
||||||||||||| || || ||||||||| ||||| ||||||||||
Sbjct: 4 gtactccctccgtccgaaaatacttgtctgagaaattgatgtatcta 50
>RF00906;MIR1122;DQ537336.1/120340-120474 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 44 ggatgtatctaaaactgaaatacatctagatacat 78
|||| ||||||||||| | ||||||||||||||||
Sbjct: 86 ggatatatctaaaactaatatacatctagatacat 52
>RF00906;MIR1122;AB238931.1/2749-2883 4568:Triticum monococcum
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 44 ggatgtatctaaaactgaaatacatctagatacat 78
|||||||| || |||| ||||||||||||||||||
Sbjct: 50 ggatgtatttagaactaaaatacatctagatacat 84
>RF00906;MIR1122;EU282737.1/1022-902 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 121
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtc 35
|||||||||||| ||||||||||||||
Sbjct: 121 tactccctccgtccggaattacttgtc 95
>RF00906;MIR1122;DQ904440.1/75385-75530 52163:Triticum monococcum
subsp. aegilopoides
Length = 146
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 45 gatgtatctaaaactgaaatacatctagatacat 78
||||||| || |||| ||||||||||||||||||
Sbjct: 96 gatgtatgtagaactaaaatacatctagatacat 63
>RF00906;MIR1122;AF474373.1/14703-14580 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 44.1 bits (22), Expect = 4e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 41 aatggatgtatctaaaactgaaatacatctagatacattcat 82
|||||||||||| | |||| ||||| || |||||||||||||
Sbjct: 46 aatggatgtatccataactaaaataaatttagatacattcat 87
>RF00906;MIR1122;DQ445241.1/4641-4518 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 124
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 6 tagtactccctccgttcggaattacttgtc 35
||||||||||||||| ||||| ||||||||
Sbjct: 123 tagtactccctccgtccggaaatacttgtc 94
>RF00906;MIR1122;DQ445236.1/8526-8403 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 44.1 bits (22), Expect = 4e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 7 agtactccctccgttcggaattacttgtctcggaaatg 44
|||||||||||||| ||||| |||||||| | ||||||
Sbjct: 3 agtactccctccgtccggaaatacttgtcccagaaatg 40
Score = 44.1 bits (22), Expect = 4e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 41 aatggatgtatctaaaactgaaatacatctagatacattcat 82
|||||||||||||| |||| ||||| |||||||| ||||||
Sbjct: 46 aatggatgtatctataactaaaataagtctagatatattcat 87
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 5 gtagtactccctccgttcggaattacttgt 34
|||||||||||||||| ||||| |||||||
Sbjct: 124 gtagtactccctccgtccggaaatacttgt 95
