miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF091802.1/1995-2099 37682:Aegilops tauschii
Length = 105
Score = 133 bits (67), Expect = 6e-31
Identities = 92/99 (92%), Gaps = 1/99 (1%)
Strand = Plus / Plus
Query: 12 agtagtccctccgttccaaaataaatgacccaactttgtaccaattttgtactaaagtta 71
|||| |||||||||||||||||| ||||| ||||||||||| |||||||||||| |||||
Sbjct: 3 agtactccctccgttccaaaatagatgactcaactttgtactaattttgtactatagtta 62
Query: 72 gtacaaagttgagt-atctattttggaacggagggagta 109
|||||||||||||| ||||||||| ||||||||||||||
Sbjct: 63 gtacaaagttgagtcatctattttagaacggagggagta 101
Score = 87.7 bits (44), Expect = 3e-17
Identities = 86/96 (89%), Gaps = 3/96 (3%)
Strand = Plus / Minus
Query: 17 tccctccgttccaaaataaatgacccaactttgtaccaatttt-gtactaaagttagtac 75
||||||||||| |||||| ||||| ||||||||||| || | | |||| ||| |||||||
Sbjct: 98 tccctccgttctaaaatagatgactcaactttgtactaactatagtacaaaa-ttagtac 40
Query: 76 aaagttgagt-atctattttggaacggagggagtac 110
|||||||||| |||||||||||||||||||||||||
Sbjct: 39 aaagttgagtcatctattttggaacggagggagtac 4
>RF00906;MIR1122;EU626553.1/80133-80237 4572:Triticum urartu
Length = 105
Score = 117 bits (59), Expect = 3e-26
Identities = 87/95 (91%), Gaps = 1/95 (1%)
Strand = Plus / Minus
Query: 17 tccctccgttccaaaataaatgacccaactttgtaccaattttgtactaaagttagtaca 76
|||||||||||||||||| ||||||||||||| ||| || ||| || ||||||||||| |
Sbjct: 98 tccctccgttccaaaatagatgacccaactttttactaactttatattaaagttagtata 39
Query: 77 aagttgagt-atctattttggaacggagggagtac 110
||||||||| |||||||||||||||||||||||||
Sbjct: 38 aagttgagtcatctattttggaacggagggagtac 4
Score = 87.7 bits (44), Expect = 3e-17
Identities = 87/100 (87%), Gaps = 1/100 (1%)
Strand = Plus / Plus
Query: 12 agtagtccctccgttccaaaataaatgacccaactttgtaccaattttgtactaaagtta 71
|||| |||||||||||||||||| ||||| ||||||| ||| || ||| ||||||||
Sbjct: 3 agtactccctccgttccaaaatagatgactcaactttatactaactttaatataaagtta 62
Query: 72 gtacaaagttgagt-atctattttggaacggagggagtac 110
||| ||||||| || |||||||||||||||||||||||||
Sbjct: 63 gtaaaaagttgggtcatctattttggaacggagggagtac 102
>RF00906;MIR1122;AF488415.1/128685-128592 4568:Triticum monococcum
Length = 94
Score = 85.7 bits (43), Expect = 1e-16
Identities = 56/59 (94%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 52 ccaattttgtactaaagttagtacaaagttgagt-atctattttggaacggagggagta 109
|||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 32 ccaactttgtactaaagttagtacaaagttgagtcatctattttggaatggagggagta 90
Score = 54.0 bits (27), Expect = 4e-07
Identities = 49/55 (89%), Gaps = 1/55 (1%)
Strand = Plus / Minus
Query: 57 tttgtactaaagttagtacaaagttgagt-atctattttggaacggagggagtac 110
|||||||||| |||||||||||||| || ||||||||||||| ||||| |||||
Sbjct: 58 tttgtactaactttagtacaaagttgggtcatctattttggaatggaggaagtac 4
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 17 tccctccgttccaaaataaatgacccaactttgtac 52
||||||| |||||||||| ||||| |||||||||||
Sbjct: 87 tccctccattccaaaatagatgactcaactttgtac 52
>RF00906;MIR1122;DQ537335.1/8332-8425 4565:Triticum aestivum (bread
wheat)
Length = 94
Score = 81.8 bits (41), Expect = 2e-15
Identities = 48/49 (97%), Gaps = 1/49 (2%)
Strand = Plus / Minus
Query: 62 actaaagttagtacaaagttgagt-atctattttggaacggagggagta 109
|||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 53 actaaagttagtacaaagttgagtcatctattttggaacggagggagta 5
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 17 tccctccgttccaaaataaatgacccaactttgtac 52
|||||||||||||||||| ||||| |||||||||||
Sbjct: 8 tccctccgttccaaaatagatgactcaactttgtac 43
Score = 52.0 bits (26), Expect = 2e-06
Identities = 48/54 (88%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 57 tttgtactaaagttagtacaaagttgagt-atctattttggaacggagggagta 109
|||||||||| ||||| ||||||| || ||||||||||||||||||||||||
Sbjct: 37 tttgtactaactttagtgtaaagttgggtcatctattttggaacggagggagta 90
>RF00906;MIR1122;AF325197.1/3732-3639 4565:Triticum aestivum (bread
wheat)
Length = 94
Score = 77.8 bits (39), Expect = 3e-14
Identities = 55/59 (93%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 52 ccaattttgtactaaagttagtacaaagttgagt-atctattttggaacggagggagta 109
|||| ||||||||||||||||||||||||||||| |||||||||| |||||||| ||||
Sbjct: 32 ccaactttgtactaaagttagtacaaagttgagtcatctattttgaaacggaggaagta 90
Score = 61.9 bits (31), Expect = 2e-09
Identities = 50/55 (90%), Gaps = 1/55 (1%)
Strand = Plus / Minus
Query: 57 tttgtactaaagttagtacaaagttgagt-atctattttggaacggagggagtac 110
|||||||||| |||||||||||||| || ||||||||||||||||| |||||||
Sbjct: 58 tttgtactaactttagtacaaagttgggtcatctattttggaacggaaggagtac 4
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 19 cctccgttccaaaataaatgacccaactttgtac 52
|||||||| ||||||| ||||| |||||||||||
Sbjct: 85 cctccgtttcaaaatagatgactcaactttgtac 52
>RF00906;MIR1122;U29095.1/333-439 4565:Triticum aestivum (bread
wheat)
Length = 107
Score = 71.9 bits (36), Expect = 2e-12
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 17 tccctccgttccaaaataaatgacccaactttgtaccaattttgtactaaagttagtaca 76
||||||||| || |||||| |||| ||||||||||| |||||||||||||| ||||| |
Sbjct: 100 tccctccgtcccgaaataagtgactcaactttgtactaattttgtactaaaaatagtata 41
Query: 77 aagttgag 84
||||||||
Sbjct: 40 aagttgag 33
>RF00906;MIR1122;DQ871219.1/88217-88124 85692:Triticum turgidum
subsp. dicoccoides
Length = 94
Score = 67.9 bits (34), Expect = 3e-11
Identities = 50/54 (92%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 57 tttgtactaaagttagtacaaagttgagt-atctattttggaacggagggagta 109
|||||||||||| |||||||||||||||| |||||||| ||||||||||||||
Sbjct: 37 tttgtactaaagatagtacaaagttgagtcgtctattttagaacggagggagta 90
>RF00906;MIR1122;DQ154924.1/3536-3603 4571:Triticum turgidum
Length = 68
Score = 63.9 bits (32), Expect = 5e-10
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 17 tccctccgttccaaaataaatgacccaactttgtac 52
|||||||||||||||||| |||||||||||||||||
Sbjct: 61 tccctccgttccaaaatagatgacccaactttgtac 26
Score = 58.0 bits (29), Expect = 3e-08
Identities = 39/41 (95%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 70 tagtacaaagttgagt-atctattttggaacggagggagta 109
||||||||||||| || ||||||||||||||||||||||||
Sbjct: 24 tagtacaaagttgggtcatctattttggaacggagggagta 64
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 88 ctattttggaacggagggagta 109
||||||||||||||||||||||
Sbjct: 26 ctattttggaacggagggagta 5
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 61.9 bits (31), Expect = 2e-09
Identities = 82/95 (86%), Gaps = 3/95 (3%)
Strand = Plus / Plus
Query: 17 tccctccgttccaaaataaatgacccaa-ctttgtaccaattttgtactaaagttagtac 75
||||||||| ||||||||| || | ||| ||| |||| || ||||||||||||||| |||
Sbjct: 8 tccctccgtcccaaaataagtgtctcaagcttagtac-aactttgtactaaagttaatac 66
Query: 76 aaagttgag-tatctattttggaacggagggagta 109
||||||||| || |||||||| ||||||||||||
Sbjct: 67 aaagttgagacatttattttgggacggagggagta 101
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 17 tccctccgttccaaaataaatgacccaactttgta 51
||||||||| |||||||||||| | ||||||||||
Sbjct: 98 tccctccgtcccaaaataaatgtctcaactttgta 64
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 58.0 bits (29), Expect = 3e-08
Identities = 48/53 (90%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 58 ttgtactaaagttagtacaaagttgag-tatctattttggaacggagggagta 109
|||||||||||||| |||||||||||| || |||||||| ||||||||||||
Sbjct: 49 ttgtactaaagttaatacaaagttgagacatttattttgggacggagggagta 101
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 17 tccctccgttccaaaataaatgacccaactttgta 51
||||||||| |||||||||||| | ||||||||||
Sbjct: 98 tccctccgtcccaaaataaatgtctcaactttgta 64
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 58.0 bits (29), Expect = 3e-08
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 17 tccctccgttccaaaataaatgacccaactttgtaccaattttgtacta 65
||||||||| ||||||||| |||| ||||||||||| || |||||||||
Sbjct: 8 tccctccgtcccaaaataagtgactcaactttgtactaactttgtacta 56
Score = 52.0 bits (26), Expect = 2e-06
Identities = 42/46 (91%), Gaps = 1/46 (2%)
Strand = Plus / Minus
Query: 65 aaagttagtacaaagttgagt-atctattttggaacggagggagta 109
||||||||||||||||||||| | |||||||| ||||||||||||
Sbjct: 50 aaagttagtacaaagttgagtcacttattttgggacggagggagta 5
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 63 ctaaagttagtacaaagttgagt 85
|||||||||||||||||||||||
Sbjct: 81 ctaaagttagtacaaagttgagt 103
>RF00906;MIR1122;U76215.1/3218-3297 4565:Triticum aestivum (bread
wheat)
Length = 80
Score = 56.0 bits (28), Expect = 1e-07
Identities = 35/36 (97%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 75 caaagttgagt-atctattttggaacggagggagta 109
||||||||||| ||||||||||||||||||||||||
Sbjct: 40 caaagttgagtcatctattttggaacggagggagta 5
Score = 54.0 bits (27), Expect = 4e-07
Identities = 34/35 (97%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 75 caaagttgagt-atctattttggaacggagggagt 108
||||||||||| |||||||||||||||||||||||
Sbjct: 41 caaagttgagtcatctattttggaacggagggagt 75
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 17 tccctccgttccaaaataaatgacccaactttg 49
|||||||||||||||||| ||||| ||||||||
Sbjct: 8 tccctccgttccaaaatagatgactcaactttg 40
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 17 tccctccgttccaaaataaatgacccaactttg 49
|||||||||||||||||| ||||| ||||||||
Sbjct: 73 tccctccgttccaaaatagatgactcaactttg 41
>RF00906;MIR1122;DQ995510.1/1615-1718 4513:Hordeum vulgare
Length = 104
Score = 56.0 bits (28), Expect = 1e-07
Identities = 59/68 (86%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 17 tccctccgttccaaaataaatgacccaactttgtaccaattttgtactaaagttagtaca 76
||||||||| |||||||| || | ||||||||||| || ||||||||| || |||||||
Sbjct: 8 tccctccgtctcaaaataactgtctcaactttgtac-aactttgtactagagctagtaca 66
Query: 77 aagttgag 84
||||||||
Sbjct: 67 aagttgag 74
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 57 tttgtactaaagttagtacaaagttgag 84
||||||||||||||||||||||||||||
Sbjct: 55 tttgtactaaagttagtacaaagttgag 82
>RF00906;MIR1122;FJ436986.1/109208-109327 37682:Aegilops tauschii
Length = 120
Score = 56.0 bits (28), Expect = 1e-07
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 12 agtagtccctccgttccaaaataaatgacccaactttgta 51
|||| ||| |||||||||||||| ||||||||||||||||
Sbjct: 3 agtactccttccgttccaaaatagatgacccaactttgta 42
Score = 56.0 bits (28), Expect = 1e-07
Identities = 44/48 (91%), Gaps = 1/48 (2%)
Strand = Plus / Minus
Query: 64 taaagttagtacaaagttgagt-atctattttggaacggagggagtac 110
|||||||| |||||||||| || ||||||||||||||||| |||||||
Sbjct: 51 taaagttaatacaaagttgggtcatctattttggaacggaaggagtac 4
Score = 52.0 bits (26), Expect = 2e-06
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 10 ctagtagtccctccgttccaaaataaatgacccaactttgta 51
|||||| ||| |||||| ||||||| ||||||||||||||||
Sbjct: 120 ctagtactccttccgtttcaaaatagatgacccaactttgta 79
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 56.0 bits (28), Expect = 1e-07
Identities = 50/56 (89%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 57 tttgtactaaagttagtacaaagttgag-tatctattttggaacggagggagtacc 111
||||||||||||||||||||||||| || | |||||||| ||||||||||||||
Sbjct: 48 tttgtactaaagttagtacaaagttaagacacttattttgggacggagggagtacc 103
>RF00906;MIR1122;AY133251.1/901-1005 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 54.0 bits (27), Expect = 4e-07
Identities = 52/59 (88%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 53 caattttgtactaaagttagtacaaagttgag-tatctattttggaacggagggagtac 110
||||||||||||| || ||||||||||||||| | |||||||| |||||||||||||
Sbjct: 44 caattttgtactagagctagtacaaagttgagacagttattttgggacggagggagtac 102
>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
Length = 94
Score = 54.0 bits (27), Expect = 4e-07
Identities = 49/55 (89%), Gaps = 1/55 (1%)
Strand = Plus / Plus
Query: 57 tttgtactaaagttagtacaaagttgagt-atctattttggaacggagggagtac 110
|||||||||||||||||| |||||||||| | || ||||| |||||||||||||
Sbjct: 37 tttgtactaaagttagtataaagttgagtcacttaatttgggacggagggagtac 91
>RF00906;MIR1122;FJ374624.1/2920-2820 4572:Triticum urartu
Length = 101
Score = 52.0 bits (26), Expect = 2e-06
Identities = 51/59 (86%), Gaps = 4/59 (6%)
Strand = Plus / Minus
Query: 27 ccaaaataaatgacccaactttgtaccaattttgtactaaagttagtacaaagttgagt 85
||||||||| |||| ||||||||||| || || |||||||||||||||||||||||
Sbjct: 84 ccaaaataagtgactcaactttgtactaactt----ctaaagttagtacaaagttgagt 30
>RF00906;MIR1122;AF488415.1/78603-78755 4568:Triticum monococcum
Length = 153
Score = 52.0 bits (26), Expect = 2e-06
Identities = 48/54 (88%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 57 tttgtactaaagttagtacaaagttgag-tatctattttggaacggagggagta 109
|||||||||||||||||||||| ||||| | |||||||| ||||||||||||
Sbjct: 96 tttgtactaaagttagtacaaacttgagacagttattttgggacggagggagta 149
>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
Length = 116
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 60 gtactaaagttagtacaaagttgagt 85
||||||||||||||||||||||||||
Sbjct: 66 gtactaaagttagtacaaagttgagt 41
>RF00906;MIR1122;AF521177.1/206122-206018 4513:Hordeum vulgare
Length = 105
Score = 52.0 bits (26), Expect = 2e-06
Identities = 48/54 (88%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 57 tttgtactaaagttagtacaaagttgag-tatctattttggaacggagggagta 109
||||||||| || ||||||||||||||| || ||||||| |||||||||||||
Sbjct: 48 tttgtactagagctagtacaaagttgagacatttattttgaaacggagggagta 101
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 17 tccctccgttccaaaataaatgacccaactttgtac 52
|||||||||| ||||||||||| | |||||||||||
Sbjct: 98 tccctccgtttcaaaataaatgtctcaactttgtac 63
>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
Length = 104
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 57 tttgtactaaagttagtacaaagttgagt 85
||||||||||||||||| |||||||||||
Sbjct: 68 tttgtactaaagttagtgcaaagttgagt 40
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 17 tccctccgttccaaaataaatgacccaactttgtac 52
||||||||| ||||||||| |||| |||||||||||
Sbjct: 97 tccctccgtcccaaaataagtgactcaactttgtac 62
Score = 44.1 bits (22), Expect = 4e-04
Identities = 38/42 (90%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 69 ttagtacaaagttgagt-atctattttggaacggagggagta 109
||||||||||||||||| | |||||||| ||||||||||||
Sbjct: 59 ttagtacaaagttgagtcacttattttgggacggagggagta 100
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 50.1 bits (25), Expect = 7e-06
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 54 aattttgtactaaagttagtacaaagttgag-tatctattttggaacggagggagta 109
|||||||||||| || ||||||||||||||| | |||||||| ||||||||||||
Sbjct: 45 aattttgtactacagctagtacaaagttgagacacttattttgggacggagggagta 101
>RF00906;MIR1122;AY465427.2/1983-1848 4567:Triticum turgidum subsp.
durum (durum wheat)
Length = 136
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 88 ctattttggaacggagggagtac 110
|||||||||||||||||||||||
Sbjct: 26 ctattttggaacggagggagtac 4
>RF00906;MIR1122;DQ445236.1/13423-13319 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 80/95 (84%), Gaps = 3/95 (3%)
Strand = Plus / Minus
Query: 17 tccctccgttccaaaataaatgacccaa-ctttgtaccaattttgtactaaagttagtac 75
||||||||||||||||||| | | ||| ||| |||| || ||||||||| || ||||||
Sbjct: 98 tccctccgttccaaaataactatctcaagcttagtac-aactttgtactagagctagtac 40
Query: 76 aaagttgagtatct-attttggaacggagggagta 109
||| ||||| || ||||||||||||||||||||
Sbjct: 39 aaatttgagacacttattttggaacggagggagta 5
>RF00906;MIR1122;EU660894.1/143713-143848 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 136
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 89 tattttggaacggagggagtac 110
||||||||||||||||||||||
Sbjct: 112 tattttggaacggagggagtac 133
