miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU660899.1/111846-111744 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 103
Score = 101 bits (51), Expect = 2e-21
Identities = 83/95 (87%), Gaps = 9/95 (9%)
Strand = Plus / Minus
Query: 23 tactcccttcgttccagaatacttgtcgtgtttttagtttaaa---------tttgaact 73
|||||||||| ||||| |||||||||||||||||||||| ||| ||||||||
Sbjct: 99 tactcccttcattccaaaatacttgtcgtgtttttagttcaaaattttcaaatttgaact 40
Query: 74 aaaaccacgacaagtattttggaacggagggagta 108
|||||||||||||||||||||||||||||||||||
Sbjct: 39 aaaaccacgacaagtattttggaacggagggagta 5
Score = 75.8 bits (38), Expect = 1e-13
Identities = 82/98 (83%), Gaps = 9/98 (9%)
Strand = Plus / Plus
Query: 22 atactcccttcgttccagaatacttgtcgtgtttttagtttaaa---------tttgaac 72
||||||||| ||||||| ||||||||||||| |||||||| ||| |||||||
Sbjct: 4 atactccctccgttccaaaatacttgtcgtggttttagttcaaatttgaaaattttgaac 63
Query: 73 taaaaccacgacaagtattttggaacggagggagtaca 110
||||| ||||||||||||||||||| | ||||||||||
Sbjct: 64 taaaaacacgacaagtattttggaatgaagggagtaca 101
>RF00906;MIR1122;AK252407.1/1225-1338 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 114
Score = 89.7 bits (45), Expect = 8e-18
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 38 agaatacttgtcgtgtttttagtttaaatttgaactaaaaccacgacaagtattttggaa 97
||||| ||||||||| |||||||| ||||||||||||||||||||||||| ||| ||||
Sbjct: 40 agaattcttgtcgtgcttttagttcaaatttgaactaaaaccacgacaagaattatggac 99
Query: 98 cggagggagtaca 110
||| |||||||||
Sbjct: 100 cggggggagtaca 112
Score = 65.9 bits (33), Expect = 1e-10
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 35 tccagaatacttgtcgtgtttttagtttaaatttgaactaaaaccacgacaag 87
|||| ||| ||||||||| |||||||| ||||||||||||||| |||||||||
Sbjct: 98 tccataattcttgtcgtggttttagttcaaatttgaactaaaagcacgacaag 46
Score = 44.1 bits (22), Expect = 5e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 72 ctaaaaccacgacaagtattttggaacggagggagtac 109
|||||| ||||||||| ||| | |||||||||||||||
Sbjct: 41 ctaaaagcacgacaagaattattgaacggagggagtac 4
>RF00906;MIR1122;EU730899.1/47735-47828 15368:Brachypodium
distachyon
Length = 94
Score = 81.8 bits (41), Expect = 2e-15
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 40 aatacttgtcgtgtttttagtttaaatttgaactaaaaccacgacaagtattttggaacg 99
|||||||||| || ||||||| ||| ||| |||||||||||||||||||||| ||||||
Sbjct: 22 aatacttgtcatgattttagtgcaaagttgtactaaaaccacgacaagtatttaggaacg 81
Query: 100 gagggagta 108
|||||||||
Sbjct: 82 gagggagta 90
Score = 61.9 bits (31), Expect = 2e-09
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 22 atactcccttcgttccagaatacttgtcgtgtttttagtttaaatttgaactaaaaccac 81
||||||||| |||||| ||||||||||||| ||||||| || |||| ||||||| ||
Sbjct: 91 atactccctccgttcctaaatacttgtcgtggttttagtacaactttgcactaaaatcat 32
Query: 82 gacaagtattt 92
|||||||||||
Sbjct: 31 gacaagtattt 21
>RF00906;MIR1122;AY137517.1/5819-5912 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 94
Score = 71.9 bits (36), Expect = 2e-12
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 46 tgtcgtgtttttagtttaaatttgaactaaaaccacgacaagtattttggaacggaggga 105
||||||| ||||||| |||||||||||||||||| |||| ||||||||| ||||||||
Sbjct: 28 tgtcgtggttttagtacaaatttgaactaaaaccatgacacttattttggatcggaggga 87
Query: 106 gtac 109
||||
Sbjct: 88 gtac 91
Score = 69.9 bits (35), Expect = 8e-12
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 23 tactcccttcgttccagaatacttgtcgtgtttttagtttaaatttgaactaaaaccacg 82
|||||||| || |||| |||| |||| || |||||||| ||||||| ||||||||||||
Sbjct: 90 tactccctccgatccaaaataagtgtcatggttttagttcaaatttgtactaaaaccacg 31
Query: 83 acaagtattttggaacggaggga 105
||| ||||||||| ||||||||
Sbjct: 30 acacttattttggatcggaggga 8
>RF00906;MIR1122;DQ537335.1/11354-11447 4565:Triticum aestivum
(bread wheat)
Length = 94
Score = 69.9 bits (35), Expect = 8e-12
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 54 ttttagtttaaatttgaactaaaaccacgacaagtattttggaacggagggagta 108
|||||||| |||||||||||||||||| ||| |||| ||||||| ||||||||||
Sbjct: 36 ttttagttcaaatttgaactaaaaccatgacgagtaatttggaagggagggagta 90
Score = 54.0 bits (27), Expect = 5e-07
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 22 atactcccttcgttccagaatacttgtcgtgtttttagtttaaatttgaactaaaacca 80
||||||||| | ||||| | |||| ||| || |||||||| ||||||||||||||||||
Sbjct: 91 atactccctcccttccaaattactcgtcatggttttagttcaaatttgaactaaaacca 33
>RF00906;MIR1122;FJ184989.1/974-892 4565:Triticum aestivum (bread
wheat)
Length = 83
Score = 69.9 bits (35), Expect = 8e-12
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 63 aaatttgaactaaaaccacgacaagtattttggaacggagggagtac 109
|||||||||||||||||||||| |||| ||||||| |||||||||||
Sbjct: 34 aaatttgaactaaaaccacgacgagtaatttggaatggagggagtac 80
>RF00906;MIR1122;AM180263.1/1164-1082 4513:Hordeum vulgare
Length = 83
Score = 63.9 bits (32), Expect = 5e-10
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 70 aactaaaaccacgacaagtattttggaacggagggagtac 109
|||||||||||||||||| ||| |||||||||||||||||
Sbjct: 43 aactaaaaccacgacaagaattatggaacggagggagtac 4
>RF00906;MIR1122;EU730901.1/155966-155873 15368:Brachypodium
distachyon
Length = 94
Score = 63.9 bits (32), Expect = 5e-10
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 66 tttgaactaaaaccacgacaagtattttggaacggagggagtac 109
|||| |||||||| ||||||||||||| ||||||||||||||||
Sbjct: 47 tttgcactaaaacaacgacaagtatttaggaacggagggagtac 4
Score = 61.9 bits (31), Expect = 2e-09
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 23 tactcccttcgttccagaatacttgtcgtgtttttagtttaaatttgaactaaaaccacg 82
|||||||| |||||| |||||||||||| ||||||| ||| ||| |||||||| |
Sbjct: 5 tactccctccgttcctaaatacttgtcgttgttttagtgcaaacttgtactaaaacaggg 64
Query: 83 acaagtattttggaacggagggagtac 109
|||||||||| | ||||||||||||||
Sbjct: 65 acaagtatttagaaacggagggagtac 91
>RF00906;MIR1122;EU730896.1/84586-84679 15368:Brachypodium
distachyon
Length = 94
Score = 63.9 bits (32), Expect = 5e-10
Identities = 74/88 (84%)
Strand = Plus / Plus
Query: 21 aatactcccttcgttccagaatacttgtcgtgtttttagtttaaatttgaactaaaacca 80
|||||||||| |||| | |||||||||||| || |||| ||| ||| ||||||||
Sbjct: 3 aatactccctccgtttctaaatacttgtcgttgttctagtgcaaacttgtactaaaacag 62
Query: 81 cgacaagtattttggaacggagggagta 108
|||||||||||| |||||||||||||||
Sbjct: 63 cgacaagtatttaggaacggagggagta 90
Score = 60.0 bits (30), Expect = 8e-09
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 23 tactcccttcgttccagaatacttgtcgtgtttttagtttaaatttgaactaaaaccacg 82
|||||||| |||||| ||||||||||| ||||||| || |||| |||| ||| |||
Sbjct: 90 tactccctccgttcctaaatacttgtcgctgttttagtacaagtttgcactagaacaacg 31
Query: 83 acaagtattttggaacggagggagta 108
|||||||||| | |||||||||||||
Sbjct: 30 acaagtatttagaaacggagggagta 5
>RF00906;MIR1122;CR626933.1/11895-11804 4571:Triticum turgidum
Length = 92
Score = 60.0 bits (30), Expect = 8e-09
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 54 ttttagtttaaatttgaactaaaaccacgacaagtattttggaacggagg 103
|||||||| |||||||||||||||||| |||| |||||||| |||||||
Sbjct: 36 ttttagttcaaatttgaactaaaaccaagacacttattttgggacggagg 85
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 54 ttttagtttaaatttgaactaaaacc 79
|||||||| |||||||||||||||||
Sbjct: 59 ttttagttcaaatttgaactaaaacc 34
>RF00906;MIR1122;AM932683.1/22409-22315 4565:Triticum aestivum
(bread wheat)
Length = 95
Score = 58.0 bits (29), Expect = 3e-08
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 54 ttttagtttaaatttgaactaaaaccacgacaagtattttggaacggagggagtaca 110
|||||||| ||||||||||||||||||| || |||| | ||||| |||||||||||
Sbjct: 59 ttttagttcaaatttgaactaaaaccacaacgagtaaataggaacagagggagtaca 3
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 54 ttttagtttaaatttgaactaaaaccac 81
|||||||| |||||||||||||||||||
Sbjct: 36 ttttagttcaaatttgaactaaaaccac 63
>RF00906;MIR1122;EU730902.1/79802-79895 15368:Brachypodium
distachyon
Length = 94
Score = 56.0 bits (28), Expect = 1e-07
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 54 ttttagtttaaatttgaactaaaaccacgacaagtattttggaacggagggagtac 109
|||||||| ||| ||| |||||||| |||||||| |||| ||| ||||||||||||
Sbjct: 59 ttttagttcaaaattgcactaaaacaacgacaagaatttaggatcggagggagtac 4
>RF00906;MIR1122;EU660894.1/143713-143848 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 136
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 84 caagtattttggaacggagggagtaca 110
|||||||||||||||||||||||||||
Sbjct: 108 caagtattttggaacggagggagtaca 134
>RF00906;MIR1122;EU730895.1/40632-40541 15368:Brachypodium
distachyon
Length = 92
Score = 52.0 bits (26), Expect = 2e-06
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 64 aatttgaactaaaaccacgacaagtattttggaacggagggagtac 109
||||||||||||||||| ||||| |||| ||| ||||||||||||
Sbjct: 49 aatttgaactaaaaccagaacaagaatttaggatcggagggagtac 4
>RF00906;MIR1122;AY235466.1/780-656 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 80 acgacaagtattttggaacggagggagta 108
|||||||||||||||| ||||||||||||
Sbjct: 93 acgacaagtattttgggacggagggagta 121
>RF00906;MIR1122;AY235464.1/714-838 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 80 acgacaagtattttggaacggagggagta 108
|||||||||||||||| ||||||||||||
Sbjct: 33 acgacaagtattttgggacggagggagta 5
>RF00906;MIR1122;DQ537335.1/79725-79622 4565:Triticum aestivum
(bread wheat)
Length = 104
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 82 gacaagtattttggaacggagggagtaca 110
||||||||||| |||||||||||||||||
Sbjct: 74 gacaagtatttaggaacggagggagtaca 102
>RF00906;MIR1122;DQ145552.1/668-803 4573:Aegilops speltoides
Length = 136
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 82 gacaagtattttggaacggagggagtac 109
|||||||||||| |||||||||||||||
Sbjct: 31 gacaagtattttcgaacggagggagtac 4
>RF00906;MIR1122;EF059989.1/226094-226187 29664:Brachypodium
sylvaticum
Length = 94
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 73 taaaaccacgacaagtattttggaacggagggagta 108
|||| ||||||||||| || ||||||||||||||||
Sbjct: 55 taaacccacgacaagttttatggaacggagggagta 90
>RF00906;MIR1122;AF459639.1/191055-190921 4568:Triticum monococcum
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 82 gacaagtattttggaacggagggagta 108
|||||||| ||||||||||||||||||
Sbjct: 105 gacaagtaatttggaacggagggagta 131
>RF00906;MIR1122;DQ123819.1/2832-2966 4571:Triticum turgidum
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 82 gacaagtattttggaacggagggagta 108
|||||||| ||||||||||||||||||
Sbjct: 105 gacaagtaatttggaacggagggagta 131
>RF00906;MIR1122;EU626553.1/80133-80237 4572:Triticum urartu
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 88 tattttggaacggagggagtaca 110
|||||||||||||||||||||||
Sbjct: 81 tattttggaacggagggagtaca 103
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 88 tattttggaacggagggagtac 109
||||||||||||||||||||||
Sbjct: 25 tattttggaacggagggagtac 4
>RF00906;MIR1122;AY465427.2/1983-1848 4567:Triticum turgidum subsp.
durum (durum wheat)
Length = 136
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 88 tattttggaacggagggagtaca 110
|||||||||||||||||||||||
Sbjct: 25 tattttggaacggagggagtaca 3
>RF00906;MIR1122;AF254799.1/46723-46588 4513:Hordeum vulgare
Length = 136
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 82 gacaagtattttggaacggagggagta 108
|||||| ||||||||||||||||||||
Sbjct: 106 gacaagaattttggaacggagggagta 132
>RF00906;MIR1122;DQ890018.1/183-48 77009:Hordeum vulgare subsp.
spontaneum
Length = 136
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 82 gacaagtattttggaacggagggagta 108
|||||| ||||||||||||||||||||
Sbjct: 31 gacaagaattttggaacggagggagta 5
>RF00906;MIR1122;AY821690.1/1219-1313 4485:Aegilops comosa
Length = 95
Score = 46.1 bits (23), Expect = 1e-04
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 66 tttgaactaaaaccacgacaagtattttggaacggagggagta 108
|||||| |||||||||||| ||||||||| |||||||||||
Sbjct: 47 tttgaagtaaaaccacgacgcttattttggatcggagggagta 5
>RF00906;MIR1122;ABXC01001510.1/32715-32871 4558:Sorghum bicolor
(sorghum)
Length = 157
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 91 tttggaacggagggagtacaaa 112
||||||||||||||||||||||
Sbjct: 136 tttggaacggagggagtacaaa 157
>RF00906;MIR1122;X73528.1/281-181 4565:Triticum aestivum (bread
wheat)
Length = 101
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 20 aaatactcccttcgttccagaatacttgtc 49
||||||||||||||||||| ||| ||||||
Sbjct: 2 aaatactcccttcgttccaaaattcttgtc 31
>RF00906;MIR1122;EF081030.1/6132-5986 4572:Triticum urartu
Length = 147
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 81 cgacaagtattttggaacggagggagtaca 110
||||||||| || |||||||||||||||||
Sbjct: 116 cgacaagtaattcggaacggagggagtaca 145
>RF00906;MIR1122;DQ445241.1/4641-4518 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 124
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 82 gacaagtattttggaacggagggagtacaa 111
|||||||||||| ||||| |||||||||||
Sbjct: 31 gacaagtattttcgaacgaagggagtacaa 2
>RF00906;MIR1122;AF091802.1/1995-2099 37682:Aegilops tauschii
Length = 105
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 88 tattttggaacggagggagtac 109
||||||||||||||||||||||
Sbjct: 25 tattttggaacggagggagtac 4
