miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU626553.1/80133-80237 4572:Triticum urartu
Length = 105
Score = 83.8 bits (42), Expect = 3e-16
Identities = 45/46 (97%)
Strand = Plus / Minus
Query: 28 aaagttagtataaagttgggtcatctattttggaacggagggagta 73
|||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 50 aaagttagtataaagttgagtcatctattttggaacggagggagta 5
Score = 83.8 bits (42), Expect = 3e-16
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 28 aaagttagtataaagttgggtcatctattttggaacggagggagta 73
|||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 56 aaagttagtaaaaagttgggtcatctattttggaacggagggagta 101
>RF00906;MIR1122;DQ154924.1/3536-3603 4571:Triticum turgidum
Length = 68
Score = 81.8 bits (41), Expect = 1e-15
Identities = 57/61 (93%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 13 tactccctccattccaaagttagtataaagttgggtcatctattttggaacggagggagt 72
|||||||||| ||||||| | |||| ||||||||||||||||||||||||||||||||||
Sbjct: 5 tactccctccgttccaaaat-agtacaaagttgggtcatctattttggaacggagggagt 63
Query: 73 a 73
|
Sbjct: 64 a 64
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 52 ctattttggaacggagggagtag 74
|||||||||||||||||||||||
Sbjct: 26 ctattttggaacggagggagtag 4
>RF00906;MIR1122;DQ537335.1/8332-8425 4565:Triticum aestivum
(bread wheat)
Length = 94
Score = 79.8 bits (40), Expect = 5e-15
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 32 ttagtataaagttgggtcatctattttggaacggagggagtagt 75
||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 49 ttagtgtaaagttgggtcatctattttggaacggagggagtagt 92
Score = 75.8 bits (38), Expect = 8e-14
Identities = 44/46 (95%)
Strand = Plus / Minus
Query: 28 aaagttagtataaagttgggtcatctattttggaacggagggagta 73
|||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 50 aaagttagtacaaagttgagtcatctattttggaacggagggagta 5
>RF00906;MIR1122;AF091802.1/1995-2099 37682:Aegilops tauschii
Length = 105
Score = 69.9 bits (35), Expect = 5e-12
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 27 caaagttagtataaagttgggtcatctattttggaacggagggagta 73
|||| |||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 51 caaaattagtacaaagttgagtcatctattttggaacggagggagta 5
Score = 67.9 bits (34), Expect = 2e-11
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 30 agttagtataaagttgggtcatctattttggaacggagggagtagt 75
|||||||| ||||||| |||||||||||| ||||||||||||||||
Sbjct: 58 agttagtacaaagttgagtcatctattttagaacggagggagtagt 103
>RF00906;MIR1122;AF488415.1/128685-128592 4568:Triticum monococcum
Length = 94
Score = 67.9 bits (34), Expect = 2e-11
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 28 aaagttagtataaagttgggtcatctattttggaacggagggagta 73
|||||||||| ||||||| |||||||||||||||| ||||||||||
Sbjct: 45 aaagttagtacaaagttgagtcatctattttggaatggagggagta 90
Score = 60.0 bits (30), Expect = 5e-09
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 32 ttagtataaagttgggtcatctattttggaacggagggagta 73
|||||| |||||||||||||||||||||||| ||||| ||||
Sbjct: 46 ttagtacaaagttgggtcatctattttggaatggaggaagta 5
>RF00906;MIR1122;AF325197.1/3732-3639 4565:Triticum aestivum
(bread wheat)
Length = 94
Score = 67.9 bits (34), Expect = 2e-11
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 32 ttagtataaagttgggtcatctattttggaacggagggagta 73
|||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 46 ttagtacaaagttgggtcatctattttggaacggaaggagta 5
Score = 60.0 bits (30), Expect = 5e-09
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 28 aaagttagtataaagttgggtcatctattttggaacggagggagta 73
|||||||||| ||||||| ||||||||||||| |||||||| ||||
Sbjct: 45 aaagttagtacaaagttgagtcatctattttgaaacggaggaagta 90
>RF00906;MIR1122;FJ436986.1/109208-109327 37682:Aegilops tauschii
Length = 120
Score = 67.9 bits (34), Expect = 2e-11
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 28 aaagttagtataaagttgggtcatctattttggaacggagggagta 73
||||||| || |||||||||||||||||||||||||||| ||||||
Sbjct: 50 aaagttaatacaaagttgggtcatctattttggaacggaaggagta 5
Score = 60.0 bits (30), Expect = 5e-09
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 28 aaagttagtataaagttgggtcatctattttggaacggagggagta 73
||||||| || ||||||||||||||||||||| |||||| ||||||
Sbjct: 71 aaagttaatacaaagttgggtcatctattttgaaacggaaggagta 116
>RF00906;MIR1122;U76215.1/3218-3297 4565:Triticum aestivum (bread
wheat)
Length = 80
Score = 61.9 bits (31), Expect = 1e-09
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 39 aaagttgggtcatctattttggaacggagggagta 73
||||||| |||||||||||||||||||||||||||
Sbjct: 39 aaagttgagtcatctattttggaacggagggagta 5
Score = 60.0 bits (30), Expect = 5e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 39 aaagttgggtcatctattttggaacggagggagt 72
||||||| ||||||||||||||||||||||||||
Sbjct: 42 aaagttgagtcatctattttggaacggagggagt 75
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 54.0 bits (27), Expect = 3e-07
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 27 caaagttagtataaagttgggtcatctattttggaacggagggagta 73
||||||||||| ||||||| |||| |||||||| ||||||||||||
Sbjct: 51 caaagttagtacaaagttgagtcacttattttgggacggagggagta 5
>RF00906;MIR1122;DQ871219.1/88217-88124 85692:Triticum turgidum
subsp. dicoccoides
Length = 94
Score = 52.0 bits (26), Expect = 1e-06
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 28 aaagttagtataaagttgggtcatctattttggaacggagggagta 73
|||| ||||| ||||||| ||| |||||||| ||||||||||||||
Sbjct: 45 aaagatagtacaaagttgagtcgtctattttagaacggagggagta 90
>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
Length = 94
Score = 52.0 bits (26), Expect = 1e-06
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 28 aaagttagtataaagttgggtcatctattttggaacggagggagta 73
|||||||||||||||||| |||| || ||||| ||||||||||||
Sbjct: 45 aaagttagtataaagttgagtcacttaatttgggacggagggagta 90
>RF00906;MIR1122;AC166046.15/79888-79744 3880:Medicago truncatula
(barrel medic)
Length = 145
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 53 tattttggaacggagggagtagtt 76
||||||||||||||||||||||||
Sbjct: 25 tattttggaacggagggagtagtt 2
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 48.1 bits (24), Expect = 2e-05
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 28 aaagttagtataaagttgggtcatctattttggaacggagggagtagt 75
||||||| || ||||||| | ||| |||||||| ||||||||||||||
Sbjct: 56 aaagttaatacaaagttgagacatttattttgggacggagggagtagt 103
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 48.1 bits (24), Expect = 2e-05
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 28 aaagttagtataaagttgggtcatctattttggaacggagggagtagt 75
||||||| || ||||||| | ||| |||||||| ||||||||||||||
Sbjct: 56 aaagttaatacaaagttgagacatttattttgggacggagggagtagt 103
>RF00906;MIR1122;AY465427.2/1983-1848 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 136
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 47 gtcatctattttggaacggagggagta 73
|||| ||||||||||||||||||||||
Sbjct: 31 gtcaactattttggaacggagggagta 5
>RF00906;MIR1122;EU379326.1/1838-1972 269377:Poa palustris
Length = 135
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 47 gtcatctattttggaacggagggagta 73
|||||||| ||||||||||||||||||
Sbjct: 31 gtcatctaatttggaacggagggagta 5
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 48 tcatctattttggaacggagggagta 73
||||||| ||||||||||||||||||
Sbjct: 106 tcatctaatttggaacggagggagta 131
>RF00906;MIR1122;AAAA02003905.1/26512-26644 39946:Oryza sativa
Indica Group
Length = 133
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 53 tattttggaacggagggagtagt 75
|||||||||||||||||||||||
Sbjct: 25 tattttggaacggagggagtagt 3
>RF00906;MIR1122;ABXC01004300.1/32074-32218 4558:Sorghum bicolor
(sorghum)
Length = 145
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 56 tttggaacggagggagtagtta 77
||||||||||||||||||||||
Sbjct: 22 tttggaacggagggagtagtta 1
>RF00906;MIR1122;AY943294.1/62260-62364 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 53 tattttggaacggagggagtag 74
||||||||||||||||||||||
Sbjct: 25 tattttggaacggagggagtag 4
>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
Length = 104
Score = 44.1 bits (22), Expect = 3e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 32 ttagtataaagttgggtcatctattttggaacggagggagta 73
|||||| ||||||| |||| |||||||| ||||||||||||
Sbjct: 59 ttagtacaaagttgagtcacttattttgggacggagggagta 100
>RF00906;MIR1122;AF521177.1/206122-206018 4513:Hordeum vulgare
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 33 tagtataaagttgggtcatctattttggaacggagggagtag 74
||||| ||||||| | ||| ||||||| ||||||||||||||
Sbjct: 61 tagtacaaagttgagacatttattttgaaacggagggagtag 102
>RF00906;MIR1122;AAAA02030656.1/4636-4541 39946:Oryza sativa
Indica Group
Length = 96
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 tattttggaacggagggagtag 74
||||||||||||||||||||||
Sbjct: 72 tattttggaacggagggagtag 93
>RF00906;MIR1122;AAAA02020856.1/51643-51799 39946:Oryza sativa
Indica Group
Length = 157
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 tattttggaacggagggagtag 74
||||||||||||||||||||||
Sbjct: 133 tattttggaacggagggagtag 154
>RF00906;MIR1122;AC079888.10/111519-111651 39947:Oryza sativa
Japonica Group
Length = 133
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 tattttggaacggagggagtag 74
||||||||||||||||||||||
Sbjct: 109 tattttggaacggagggagtag 130
>RF00906;MIR1122;AP008213.1/28683389-28683301 39947:Oryza sativa
Japonica Group
Length = 89
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 tattttggaacggagggagtag 74
||||||||||||||||||||||
Sbjct: 65 tattttggaacggagggagtag 86
>RF00906;MIR1122;AAAA02015448.1/20736-20847 39946:Oryza sativa
Indica Group
Length = 112
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 tattttggaacggagggagtag 74
||||||||||||||||||||||
Sbjct: 88 tattttggaacggagggagtag 109
>RF00906;MIR1122;AP008217.1/23244951-23245072 39947:Oryza sativa
Japonica Group
Length = 122
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 tattttggaacggagggagtag 74
||||||||||||||||||||||
Sbjct: 98 tattttggaacggagggagtag 119
