miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;DQ901436.1/1229-1333 4565:Triticum aestivum
(bread wheat)
Length = 105
Score = 77.8 bits (39), Expect = 4e-14
Identities = 51/55 (92%)
Strand = Plus / Plus
Query: 35 ctccctcggtcccaaaatatatgtctcaactttatactagctttaatacaaagtt 89
||||||| ||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 7 ctccctccgtcccaaaataagtgtctcaactttgtactagctttaatacaaagtt 61
>RF00906;MIR1122;EU626553.1/80133-80237 4572:Triticum urartu
Length = 105
Score = 69.9 bits (35), Expect = 9e-12
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 31 agtactccctcggtcccaaaatatatgtctcaactttatactagctttaatacaaagtt 89
||||||||||| || |||||||| ||| ||||||||||||||| |||||||| ||||||
Sbjct: 3 agtactccctccgttccaaaatagatgactcaactttatactaactttaatataaagtt 61
>RF00906;MIR1122;DQ995510.1/1615-1718 4513:Hordeum vulgare
Length = 104
Score = 67.9 bits (34), Expect = 4e-11
Identities = 61/70 (87%)
Strand = Plus / Minus
Query: 30 tagtactccctcggtcccaaaatatatgtctcaactttatactagctttaatacaaagtt 89
|||||||||||| |||||||||| |||||||||||| |||||||| || |||||||||
Sbjct: 103 tagtactccctccatcccaaaataactgtctcaactttgtactagctctagtacaaagtt 44
Query: 90 taacaaagtt 99
||||||||
Sbjct: 43 gtacaaagtt 34
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 65.9 bits (33), Expect = 1e-10
Identities = 51/57 (89%)
Strand = Plus / Minus
Query: 33 tactccctcggtcccaaaatatatgtctcaactttatactagctttaatacaaagtt 89
||||||||| ||||||||||| ||||||||||||| || || ||||| |||||||||
Sbjct: 101 tactccctccgtcccaaaataaatgtctcaactttgtattaactttagtacaaagtt 45
>RF00906;MIR1122;AY133251.1/901-1005 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 61.9 bits (31), Expect = 2e-09
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 32 gtactccctcggtcccaaaatatatgtctcaactttatactagctttaatacaaa 86
|||||||||| ||||||||||| |||||||||||| |||||||| || ||||||
Sbjct: 102 gtactccctccgtcccaaaataactgtctcaactttgtactagctctagtacaaa 48
>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
Length = 94
Score = 61.9 bits (31), Expect = 2e-09
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 31 agtactccctcggtcccaaaatatatgtctcaactttatactagctttaatacaaagtt 89
||||||||||| |||||||| || || ||||||||||||||| ||||| |||||||||
Sbjct: 92 agtactccctccgtcccaaattaagtgactcaactttatactaactttagtacaaagtt 34
>RF00906;MIR1122;AK249560.1/988-1092 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 60.0 bits (30), Expect = 9e-09
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 33 tactccctcggtcccaaaatatatgtctcaactttatactagctttaatacaaa 86
|||||| || ||||||||||| ||||||||||||||||||||| || ||||||
Sbjct: 5 tactccatccgtcccaaaataagtgtctcaactttatactagctatagtacaaa 58
>RF00906;MIR1122;DQ445238.1/5626-5730 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 60.0 bits (30), Expect = 9e-09
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 33 tactccctcggtcccaaaatatatgtctcaactttatactag 74
||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 101 tactccctccgtcccaaaataactgtctcaactttatactag 60
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 60.0 bits (30), Expect = 9e-09
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 33 tactccctcggtcccaaaatatatgtctcaactttatactagctttaatacaaa 86
||||||||| ||||||||||| |||||||||||| |||||||| || ||||||
Sbjct: 101 tactccctccgtcccaaaataagtgtctcaactttgtactagctgtagtacaaa 48
>RF00906;MIR1122;EU593539.1/914-1018 4513:Hordeum vulgare
Length = 105
Score = 60.0 bits (30), Expect = 9e-09
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 33 tactccctcggtcccaaaatatatgtctcaactttatactag 74
||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 101 tactccctccgtcccaaaataactgtctcaactttatactag 60
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 60.0 bits (30), Expect = 9e-09
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 32 gtactccctcggtcccaaaatatatgtctcaactttatactagctttaatacaaagtt 89
|||||||||| ||||||||||| ||||| |||||| ||||| ||||| |||||||||
Sbjct: 102 gtactccctccgtcccaaaataagtgtcttaactttgtactaactttagtacaaagtt 45
>RF00906;MIR1122;AF488415.1/78603-78755 4568:Triticum monococcum
Length = 153
Score = 58.0 bits (29), Expect = 4e-08
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 33 tactccctcggtcccaaaatatatgtctcaactttatactagctttaatacaaagtt 89
||||||||| ||||||||||| |||||||| ||| ||||| ||||| |||||||||
Sbjct: 149 tactccctccgtcccaaaataactgtctcaagtttgtactaactttagtacaaagtt 93
>RF00906;MIR1122;AF521177.1/206122-206018 4513:Hordeum vulgare
Length = 105
Score = 58.0 bits (29), Expect = 4e-08
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 33 tactccctcggtcccaaaatatatgtctcaactttatactagctttaatacaaagtt 89
||||||||| || ||||||| ||||||||||||| |||||||| || |||||||||
Sbjct: 101 tactccctccgtttcaaaataaatgtctcaactttgtactagctctagtacaaagtt 45
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 58.0 bits (29), Expect = 4e-08
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 33 tactccctcggtcccaaaatatatgtctcaactttatactagctttaatacaa 85
||||||||| ||||||||||| ||||||||||||| || || ||||| |||||
Sbjct: 101 tactccctccgtcccaaaataaatgtctcaactttgtattaactttagtacaa 49
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 58.0 bits (29), Expect = 4e-08
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 33 tactccctcggtcccaaaatatatgtctcaactttatactagctttaatacaaagtt 89
||||||||| |||||||||| |||||||||||| ||||| ||||| |||||||||
Sbjct: 108 tactccctccatcccaaaataagtgtctcaactttgtactaactttagtacaaagtt 52
>RF00906;MIR1122;AK252392.1/1279-1175 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 56.0 bits (28), Expect = 1e-07
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 33 tactccctcggtcccaaaatatatgtctcaactttatactagct 76
||||||||| |||||||||||| ||||| |||||| ||||||||
Sbjct: 101 tactccctccgtcccaaaatatctgtcttaactttgtactagct 58
>RF00906;MIR1122;AK249748.1/2677-2573 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 54.0 bits (27), Expect = 5e-07
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 29 atagtactccctcggtcccaaaatatatgtctcaactttatactagcttta 79
||||||||||||| || |||||||| ||||| |||||| |||||||||||
Sbjct: 1 atagtactccctctgttccaaaataactgtcttaactttgtactagcttta 51
>RF00906;MIR1122;AJ249141.1/1014-910 4513:Hordeum vulgare
Length = 105
Score = 50.1 bits (25), Expect = 9e-06
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 33 tactccctcggtcccaaaatatatgtctcaactttatactagctttaatacaaagtt 89
||||||||| ||| ||||||| |||||||||||| || ||||| || |||||||||
Sbjct: 101 tactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagtt 45
>RF00906;MIR1122;X83518.1/7301-7197 4513:Hordeum vulgare
Length = 105
Score = 50.1 bits (25), Expect = 9e-06
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 33 tactccctcggtcccaaaatatatgtctcaactttatactagctttaatacaaagtt 89
||||||||| | |||||||| |||||||||||| |||||||| || |||||||||
Sbjct: 101 tactccctctcttccaaaataagtgtctcaactttgtactagctctactacaaagtt 45
>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum
(bread wheat)
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 31 agtactccctcggtcccaaaatatatgtctcaactttatactagctttaatacaaagtt 89
|||||||| || ||||||||||| |||||||| |||| |||| || || |||||||||
Sbjct: 3 agtactccttccgtcccaaaataagtgtctcaattttacactaactctagtacaaagtt 61
>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
subsp. dicoccoides
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 32 gtactccctcggtcccaaaatatatgtctcaactttatactagctttaatacaaa 86
|||||||||| |||||||||| |||||||||||| ||||| || || ||||||
Sbjct: 102 gtactccctccatcccaaaataagtgtctcaactttgtactatctctagtacaaa 48
>RF00906;MIR1122;AY943294.1/62260-62364 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 32 gtactccctcggtcccaaaatatatgtctcaactttatactagctttaatacaaa 86
||||| |||| ||||||||||| |||||||||||| || ||| |||| ||||||
Sbjct: 102 gtacttcctccgtcccaaaataactgtctcaactttgtattagatttagtacaaa 48
>RF00906;MIR1122;AF091802.1/1995-2099 37682:Aegilops tauschii
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 31 agtactccctcggtcccaaaatatatgtctcaactttatacta 73
||||||||||| || |||||||| ||| ||||||||| |||||
Sbjct: 3 agtactccctccgttccaaaatagatgactcaactttgtacta 45
>RF00906;MIR1122;AAAA02027128.1/44166-44066 39946:Oryza sativa
Indica Group
Length = 101
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 33 tactccctcggtcccaaaatata 55
|||||||||||||||||||||||
Sbjct: 5 tactccctcggtcccaaaatata 27
>RF00906;MIR1122;AP005313.3/33733-33833 39947:Oryza sativa
Japonica Group
Length = 101
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 33 tactccctcggtcccaaaatata 55
|||||||||||||||||||||||
Sbjct: 5 tactccctcggtcccaaaatata 27
>RF00906;MIR1122;AM932686.1/57613-57747 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 agtactccctcggtcccaaaat 52
||||||||||||||||||||||
Sbjct: 3 agtactccctcggtcccaaaat 24
>RF00906;MIR1122;AB183299.1/312-404 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 35 ctccctcggtcccaaaatatatgtctcaacttta 68
||||||| ||||||||||| |||||||||||||
Sbjct: 7 ctccctccgtcccaaaataagtgtctcaacttta 40
>RF00906;MIR1122;AF474373.1/50497-50394 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 104
Score = 44.1 bits (22), Expect = 5e-04
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 44 tcccaaaatatatgtctcaactttatactagctttaatacaaagtt 89
|||||||||| |||||||||||| |||||| | || |||||||||
Sbjct: 90 tcccaaaataagtgtctcaactttgtactagttctagtacaaagtt 45
>RF00906;MIR1122;EU282656.1/645-750 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 106
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 32 gtactccctcggtcccaaaata 53
||||||||||||||||||||||
Sbjct: 103 gtactccctcggtcccaaaata 82
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 44.1 bits (22), Expect = 5e-04
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 33 tactccctcggtcccaaaatatatgtctcaactttatactagcttt 78
||||||||| ||||||||||| || ||||||||| ||||| ||||
Sbjct: 5 tactccctccgtcccaaaataagtgactcaactttgtactaacttt 50
>RF00906;MIR1122;AAAA02014858.1/37527-37621 39946:Oryza sativa
Indica Group
Length = 95
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 30 tagtactccctcggtcccaaaatata 55
|||||||||||| |||||||||||||
Sbjct: 2 tagtactccctctgtcccaaaatata 27
>RF00906;MIR1122;AP003267.3/20551-20679 39947:Oryza sativa Japonica
Group
Length = 129
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 30 tagtactccctcggtcccaaaatata 55
|||||||||||| |||||||||||||
Sbjct: 128 tagtactccctccgtcccaaaatata 103
>RF00906;MIR1122;AACV01002422.1/2768-2895 39947:Oryza sativa
Japonica Group
Length = 128
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 30 tagtactccctcggtcccaaaatata 55
|||||||||||| |||||||||||||
Sbjct: 2 tagtactccctctgtcccaaaatata 27
>RF00906;MIR1122;AAAA02018654.1/14883-14772 39946:Oryza sativa
Indica Group
Length = 112
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 30 tagtactccctcggtcccaaaatata 55
|||||||||||| |||||||||||||
Sbjct: 2 tagtactccctccgtcccaaaatata 27
>RF00906;MIR1122;AL512546.2/55731-55825 4530:Oryza sativa (rice)
Length = 95
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 30 tagtactccctcggtcccaaaatata 55
|||||||||||| |||||||||||||
Sbjct: 2 tagtactccctctgtcccaaaatata 27
>RF00906;MIR1122;AP008207.1/24395058-24395107 39947:Oryza sativa
Japonica Group
Length = 50
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 31 agtactccctcggtcccaaaatatat 56
||||||||||| ||||||||||||||
Sbjct: 3 agtactccctctgtcccaaaatatat 28
