miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY137517.1/5819-5912 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 94
Score = 56.0 bits (28), Expect = 1e-07
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 42 cgtggttttagtccaaatttaaactaaaaccacgtcacttgtttatgaacggagggagta 101
|||||||||||| ||||||| ||||||||||| | ||||| ||| || |||||||||||
Sbjct: 31 cgtggttttagtacaaatttgaactaaaaccatgacacttattttggatcggagggagta 90
Score = 46.1 bits (23), Expect = 1e-04
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 44 tggttttagtccaaatttaaactaaaaccacgtcacttgtttatgaacggaggga 98
|||||||||| ||||||| |||||||||||| ||||| ||| || ||||||||
Sbjct: 62 tggttttagttcaaatttgtactaaaaccacgacacttattttggatcggaggga 8
>RF00906;MIR1122;AM932683.1/22409-22315 4565:Triticum aestivum
(bread wheat)
Length = 95
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 43 gtggttttagtccaaatttaaactaaaaccac 74
||||||||||| ||||||| ||||||||||||
Sbjct: 63 gtggttttagttcaaatttgaactaaaaccac 32
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 43 gtggttttagtccaaatttaaactaaaaccac 74
||||||||||| ||||||| ||||||||||||
Sbjct: 32 gtggttttagttcaaatttgaactaaaaccac 63
>RF00906;MIR1122;EU730899.1/47735-47828 15368:Brachypodium
distachyon
Length = 94
Score = 46.1 bits (23), Expect = 1e-04
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 47 ttttagtccaaatttaaactaaaaccacgtcacttgtttatgaacggagggagtatata 105
||||||| |||| || |||||||||||| || | |||| ||||||||||||||||||
Sbjct: 36 ttttagtgcaaagttgtactaaaaccacgacaagtatttaggaacggagggagtatata 94
>RF00906;MIR1122;DQ537335.1/11354-11447 4565:Triticum aestivum
(bread wheat)
Length = 94
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 44 tggttttagtccaaatttaaactaaaacca 73
|||||||||| ||||||| |||||||||||
Sbjct: 62 tggttttagttcaaatttgaactaaaacca 33
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 44 tggttttagtccaaatttaaactaaaacca 73
|||||||||| ||||||| |||||||||||
Sbjct: 33 tggttttagttcaaatttgaactaaaacca 62
>RF00906;MIR1122;AK252407.1/1225-1338 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 114
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 42 cgtggttttagtccaaatttaaactaaaaccacg 75
|||||||||||| ||||||| |||||||| ||||
Sbjct: 84 cgtggttttagttcaaatttgaactaaaagcacg 51
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 42 cgtggttttagtccaaatttaaactaaaaccacg 75
|||| ||||||| ||||||| |||||||||||||
Sbjct: 51 cgtgcttttagttcaaatttgaactaaaaccacg 84
