miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;DQ537335.1/79725-79622 4565:Triticum aestivum
(bread wheat)
Length = 104
Score = 91.7 bits (46), Expect = 3e-18
Identities = 46/46 (100%)
Strand = Plus / Minus
Query: 14 tactccctccgttcctaaatacttgtctttctaggcatttcaacaa 59
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 tactccctccgttcctaaatacttgtctttctaggcatttcaacaa 55
Score = 87.7 bits (44), Expect = 5e-17
Identities = 44/44 (100%)
Strand = Plus / Plus
Query: 135 ttgaaatgcctagaaagacaagtatttaggaacggagggagtac 178
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 ttgaaatgcctagaaagacaagtatttaggaacggagggagtac 101
Score = 54.0 bits (27), Expect = 7e-07
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 131 tcatttgaaatgcctagaaagacaagtatttaggaacggagggagta 177
|||||||||||| |||||||||||| |||||| || ||||||||||
Sbjct: 51 tcatttgaaatgtctagaaagacaaatatttaaaaatggagggagta 5
Score = 46.1 bits (23), Expect = 2e-04
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 14 tactccctccgttcctaaatacttgtctttctaggcatttcaa 56
|||||||||| || |||||| |||||||||||| ||||||||
Sbjct: 5 tactccctccatttttaaatatttgtctttctagacatttcaa 47
>RF00906;MIR1122;AF427791.1/1754-1590 4513:Hordeum vulgare
Length = 165
Score = 71.9 bits (36), Expect = 3e-12
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 62 gactacatacggagtaaaatgaatggatctacactttaaaatatgtctacatacatccgt 121
|||||||||||||| ||||||| || ||||| ||| ||||||||||||| |||||||||
Sbjct: 115 gactacatacggagcaaaatgagtgaatctatactctaaaatatgtctatgtacatccgt 56
Query: 122 atgt 125
||||
Sbjct: 55 atgt 52
>RF00906;MIR1122;EU545231.1/2974-3138 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 165
Score = 71.9 bits (36), Expect = 3e-12
Identities = 93/112 (83%)
Strand = Plus / Plus
Query: 14 tactccctccgttcctaaatacttgtctttctaggcatttcaacaagtgactacatacgg 73
||||||||||||||||||||| |||||| || |||||| | || ||||||||||
Sbjct: 1 tactccctccgttcctaaatataagtcttttaagcgatttcactagatgtctacatacgg 60
Query: 74 agtaaaatgaatggatctacactttaaaatatgtctacatacatccgtatgt 125
|| ||||||| || || |||||| |||| |||||||| ||||||||||||||
Sbjct: 61 agcaaaatgattgaatgtacactctaaagtatgtctatatacatccgtatgt 112
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 13 ctactccctccgttcctaaata 34
||||||||||||||||||||||
Sbjct: 165 ctactccctccgttcctaaata 144
>RF00906;MIR1122;AY821693.1/1381-1215 58935:Australopyrum velutinum
Length = 167
Score = 71.9 bits (36), Expect = 3e-12
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 62 gactacatacggagtaaaatgaatggatctacactttaaaatatgtctacatacatccgt 121
|||||||||||||| ||||||| || ||||||||| ||||||| ||||| || |||||||
Sbjct: 52 gactacatacggagcaaaatgagtgaatctacactctaaaatacgtctatattcatccgt 111
Query: 122 atgt 125
||||
Sbjct: 112 atgt 115
>RF00906;MIR1122;AF521177.1/76812-76977 4513:Hordeum vulgare
Length = 166
Score = 65.9 bits (33), Expect = 2e-10
Identities = 93/113 (82%)
Strand = Plus / Minus
Query: 13 ctactccctccgttcctaaatacttgtctttctaggcatttcaacaagtgactacatacg 72
|||||||||||||||||||||| |||||| ||| ||||| | |||||||||||
Sbjct: 165 ctactccctccgttcctaaatataagtctttttagagatttcgctagacgactacatacg 106
Query: 73 gagtaaaatgaatggatctacactttaaaatatgtctacatacatccgtatgt 125
||| ||||||| || ||||| | | ||||||||||||| ||||||||| ||||
Sbjct: 105 gagcaaaatgagtgaatctatattctaaaatatgtctatatacatccgaatgt 53
>RF00906;MIR1122;DQ352178.1/5805-5640 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 166
Score = 63.9 bits (32), Expect = 7e-10
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 62 gactacatacggagtaaaatgaatggatctacactttaaaatatgtctacatacatccgt 121
|||||||||||||| ||||||| | ||||| ||| ||||||||||||| |||||||||
Sbjct: 118 gactacatacggagcaaaatgagcgaatctatactctaaaatatgtctatgtacatccgt 59
Query: 122 atgt 125
||||
Sbjct: 58 atgt 55
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 actactccctccgttcctaaata 34
|||||||||||||||||||||||
Sbjct: 2 actactccctccgttcctaaata 24
>RF00906;MIR1122;AJ400714.1/2947-2781 4565:Triticum aestivum (bread
wheat)
Length = 167
Score = 58.0 bits (29), Expect = 5e-08
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 66 acatacggagtaaaatgaatggatctacactttaaaatatgtctacatacatccgtatgt 125
|||||||||||||||||| || | ||| ||| |||||| |||||||||||||||||||
Sbjct: 53 acatacggagtaaaatgagtgaacctatactctaaaatgcatctacatacatccgtatgt 112
Query: 126 g 126
|
Sbjct: 113 g 113
>RF00906;MIR1122;EU730901.1/155966-155873 15368:Brachypodium
distachyon
Length = 94
Score = 58.0 bits (29), Expect = 5e-08
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 151 gacaagtatttaggaacggagggagtact 179
|||||||||||||||||||||||||||||
Sbjct: 31 gacaagtatttaggaacggagggagtact 3
Score = 54.0 bits (27), Expect = 7e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 14 tactccctccgttcctaaatacttgtc 40
|||||||||||||||||||||||||||
Sbjct: 5 tactccctccgttcctaaatacttgtc 31
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 151 gacaagtatttaggaacggagggagtact 179
||||||||||||| |||||||||||||||
Sbjct: 64 gacaagtatttagaaacggagggagtact 92
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 14 tactccctccgttcctaaatacttgtc 40
||||||||||||| |||||||||||||
Sbjct: 90 tactccctccgtttctaaatacttgtc 64
>RF00906;MIR1122;AY013246.1/66605-66771 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 167
Score = 56.0 bits (28), Expect = 2e-07
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 62 gactacatacggagtaaaatgaatggatctacactttaaaatatgtctacatacatccgt 121
|||||||||||||| ||||||| || || |||| |||||||| ||||||||||||||
Sbjct: 116 gactacatacggagcaaaatgagtgaatttacatcccaaaatatgactacatacatccgt 57
Query: 122 atgt 125
||||
Sbjct: 56 atgt 53
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 11 tactactccctccgttcctaaata 34
||||||||||||||||||||||||
Sbjct: 166 tactactccctccgttcctaaata 143
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 ctactccctccgttcctaaata 34
||||||||||||||||||||||
Sbjct: 1 ctactccctccgttcctaaata 22
>RF00906;MIR1122;EU730896.1/84586-84679 15368:Brachypodium
distachyon
Length = 94
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 13 ctactccctccgttcctaaatacttgtc 40
||||||||||||||||||||||||||||
Sbjct: 91 ctactccctccgttcctaaatacttgtc 64
Score = 54.0 bits (27), Expect = 7e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 151 gacaagtatttaggaacggagggagta 177
|||||||||||||||||||||||||||
Sbjct: 64 gacaagtatttaggaacggagggagta 90
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 151 gacaagtatttaggaacggagggagta 177
||||||||||||| |||||||||||||
Sbjct: 31 gacaagtatttagaaacggagggagta 5
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 tactccctccgttcctaaatacttgtc 40
||||||||||||| |||||||||||||
Sbjct: 5 tactccctccgtttctaaatacttgtc 31
>RF00906;MIR1122;EU730899.1/47735-47828 15368:Brachypodium
distachyon
Length = 94
Score = 54.0 bits (27), Expect = 7e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 14 tactccctccgttcctaaatacttgtc 40
|||||||||||||||||||||||||||
Sbjct: 90 tactccctccgttcctaaatacttgtc 64
Score = 54.0 bits (27), Expect = 7e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 151 gacaagtatttaggaacggagggagta 177
|||||||||||||||||||||||||||
Sbjct: 64 gacaagtatttaggaacggagggagta 90
>RF00906;MIR1122;EU282260.1/1308-1219 97361:Hordeum murinum
Length = 90
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 tactactccctccgttcctaaatacttgt 39
|||||||||||| ||||||||||||||||
Sbjct: 2 tactactccctctgttcctaaatacttgt 30
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 152 acaagtatttaggaacggagggagta 177
|||||||||||||||| |||||||||
Sbjct: 30 acaagtatttaggaacagagggagta 5
>RF00906;MIR1122;DQ871219.1/152084-152250 85692:Triticum turgidum
subsp. dicoccoides
Length = 167
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 tactactccctccgttcctaaata 34
||||||||||||||||||||||||
Sbjct: 2 tactactccctccgttcctaaata 25
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 157 tatttaggaacggagggagtact 179
|||||||||||||||||||||||
Sbjct: 145 tatttaggaacggagggagtact 167
>RF00906;MIR1122;AY853252.1/232318-232152 4513:Hordeum vulgare
Length = 167
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 98 taaaatatgtctacatacatccgtatgt 125
||||||||||||| ||||||||||||||
Sbjct: 88 taaaatatgtctatatacatccgtatgt 115
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 actactccctccgttcctaaata 34
|||||||||||||||||||||||
Sbjct: 3 actactccctccgttcctaaata 25
>RF00906;MIR1122;EU660899.1/111846-111744 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 103
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 151 gacaagtatttaggaacggagggagta 177
||||||||||| |||||||||||||||
Sbjct: 31 gacaagtattttggaacggagggagta 5
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 tactccctccgttcctaaatacttgtc 40
||||||||||||||| |||||||||||
Sbjct: 5 tactccctccgttccaaaatacttgtc 31
>RF01058;MIR806;AAAA02008217.1/23513-23265 39946:Oryza sativa Indica
Group
Length = 249
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 157 tatttaggaacggagggagtac 178
||||||||||||||||||||||
Sbjct: 228 tatttaggaacggagggagtac 249
>RF01058;MIR806;AACV01015094.1/17201-16961 39947:Oryza sativa
Japonica Group
Length = 241
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 157 tatttaggaacggagggagtac 178
||||||||||||||||||||||
Sbjct: 220 tatttaggaacggagggagtac 241
>RF01058;MIR806;AL606588.4/129622-129859 4530:Oryza sativa (rice)
Length = 238
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 157 tatttaggaacggagggagtac 178
||||||||||||||||||||||
Sbjct: 22 tatttaggaacggagggagtac 1
>RF00906;MIR1122;AF459639.1/191055-190921 4568:Triticum monococcum
Length = 135
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 13 ctactccctccgttcctaaatacttgtctt 42
|||||||||||||||| || ||||||||||
Sbjct: 132 ctactccctccgttccaaattacttgtctt 103
>RF00906;MIR1122;DQ123819.1/2832-2966 4571:Triticum turgidum
Length = 135
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 13 ctactccctccgttcctaaatacttgtctt 42
|||||||||||||||| || ||||||||||
Sbjct: 132 ctactccctccgttccaaattacttgtctt 103
>RF00906;MIR1122;AM932683.1/23310-23434 4565:Triticum aestivum
(bread wheat)
Length = 125
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 11 tactactccctccgttcctaaatacttgtc 40
||||||||||||||||| |||||||||||
Sbjct: 124 tactactccctccgttcagaaatacttgtc 95
>RF00906;MIR1122;EU660894.1/143713-143848 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 136
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 153 caagtatttaggaacggagggagtac 178
||||||||| ||||||||||||||||
Sbjct: 108 caagtattttggaacggagggagtac 133
>RF00906;MIR1122;FJ188379.1/3521-3613 4513:Hordeum vulgare
Length = 93
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 157 tatttaggaacggagggagtac 178
||||||||||||||||||||||
Sbjct: 69 tatttaggaacggagggagtac 90
>RF00906;MIR1122;AJ300144.1/1569-1477 4513:Hordeum vulgare
Length = 93
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 14 tactccctccgttcctaaatacttgt 39
||||||||| ||||||||||||||||
Sbjct: 89 tactccctctgttcctaaatacttgt 64
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 152 acaagtatttaggaacggagggagta 177
|||||||||||||||| |||||||||
Sbjct: 64 acaagtatttaggaacagagggagta 89
>RF00906;MIR1122;AF338431.1/8563-8727 37682:Aegilops tauschii
Length = 165
Score = 44.1 bits (22), Expect = 7e-04
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 62 gactacatacggagtaaaatgaatggatctacactttaaaat 103
||||||||||| || ||||||| || ||||||||| ||||||
Sbjct: 114 gactacatacgaagcaaaatgagtgaatctacactctaaaat 73
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 157 tatttaggaacggagggagtac 178
||||||||||||||||||||||
Sbjct: 141 tatttaggaacggagggagtac 162
>RF00906;MIR1122;AY013754.1/1932-2046 37682:Aegilops tauschii
Length = 115
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 151 gacaagtatttaggaacggagggagtacta 180
|||||||| || ||||||||||||||||||
Sbjct: 85 gacaagtaattcggaacggagggagtacta 114
>RF00906;MIR1122;AP008214.1/20360044-20360123 39947:Oryza sativa
Japonica Group
Length = 80
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 157 tatttaggaacggagggagtac 178
||||||||||||||||||||||
Sbjct: 56 tatttaggaacggagggagtac 77
>RF00906;MIR1122;AACV01003934.1/29289-29133 39947:Oryza sativa
Japonica Group
Length = 157
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 ctactccctccgttcctaaata 34
||||||||||||||||||||||
Sbjct: 4 ctactccctccgttcctaaata 25
