miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF427791.1/1754-1590 4513:Hordeum vulgare
Length = 165
Score = 109 bits (55), Expect = 1e-23
Identities = 64/67 (95%)
Strand = Plus / Minus
Query: 62 gactacatacggagcaaaatgagtgaatctacactctaaaatatgtctacatacatccgt 121
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 115 gactacatacggagcaaaatgagtgaatctatactctaaaatatgtctatgtacatccgt 56
Query: 122 atgtagt 128
|||||||
Sbjct: 55 atgtagt 49
>RF00906;MIR1122;AY821693.1/1381-1215 58935:Australopyrum velutinum
Length = 167
Score = 109 bits (55), Expect = 1e-23
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 62 gactacatacggagcaaaatgagtgaatctacactctaaaatatgtctacatacatccgt 121
||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||
Sbjct: 52 gactacatacggagcaaaatgagtgaatctacactctaaaatacgtctatattcatccgt 111
Query: 122 atgtagt 128
|||||||
Sbjct: 112 atgtagt 118
>RF00906;MIR1122;AF521177.1/76812-76977 4513:Hordeum vulgare
Length = 166
Score = 103 bits (52), Expect = 8e-22
Identities = 100/116 (86%)
Strand = Plus / Minus
Query: 13 ctactccctccgttcctaaatacttgtctttctaggcatttcaacaagtgactacatacg 72
|||||||||||||||||||||| |||||| ||| ||||| | |||||||||||
Sbjct: 165 ctactccctccgttcctaaatataagtctttttagagatttcgctagacgactacatacg 106
Query: 73 gagcaaaatgagtgaatctacactctaaaatatgtctacatacatccgtatgtagt 128
|||||||||||||||||||| | ||||||||||||||| ||||||||| |||||||
Sbjct: 105 gagcaaaatgagtgaatctatattctaaaatatgtctatatacatccgaatgtagt 50
>RF00906;MIR1122;DQ352178.1/5805-5640 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 166
Score = 101 bits (51), Expect = 3e-21
Identities = 63/67 (94%)
Strand = Plus / Minus
Query: 62 gactacatacggagcaaaatgagtgaatctacactctaaaatatgtctacatacatccgt 121
||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||
Sbjct: 118 gactacatacggagcaaaatgagcgaatctatactctaaaatatgtctatgtacatccgt 59
Query: 122 atgtagt 128
|||||||
Sbjct: 58 atgtagt 52
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 ctactccctccgttcctaaata 34
||||||||||||||||||||||
Sbjct: 3 ctactccctccgttcctaaata 24
>RF00906;MIR1122;EU545231.1/2974-3138 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 165
Score = 101 bits (51), Expect = 3e-21
Identities = 99/115 (86%)
Strand = Plus / Plus
Query: 14 tactccctccgttcctaaatacttgtctttctaggcatttcaacaagtgactacatacgg 73
||||||||||||||||||||| |||||| || |||||| | || ||||||||||
Sbjct: 1 tactccctccgttcctaaatataagtcttttaagcgatttcactagatgtctacatacgg 60
Query: 74 agcaaaatgagtgaatctacactctaaaatatgtctacatacatccgtatgtagt 128
|||||||||| ||||| ||||||||||| |||||||| |||||||||||||||||
Sbjct: 61 agcaaaatgattgaatgtacactctaaagtatgtctatatacatccgtatgtagt 115
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 13 ctactccctccgttcctaaata 34
||||||||||||||||||||||
Sbjct: 165 ctactccctccgttcctaaata 144
>RF00906;MIR1122;AY013246.1/66605-66771 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 167
Score = 93.7 bits (47), Expect = 8e-19
Identities = 62/67 (92%)
Strand = Plus / Minus
Query: 62 gactacatacggagcaaaatgagtgaatctacactctaaaatatgtctacatacatccgt 121
|||||||||||||||||||||||||||| |||| | |||||||| ||||||||||||||
Sbjct: 116 gactacatacggagcaaaatgagtgaatttacatcccaaaatatgactacatacatccgt 57
Query: 122 atgtagt 128
|||||||
Sbjct: 56 atgtagt 50
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 ctactccctccgttcctaaata 34
||||||||||||||||||||||
Sbjct: 1 ctactccctccgttcctaaata 22
>RF00906;MIR1122;DQ537335.1/79725-79622 4565:Triticum aestivum
(bread wheat)
Length = 104
Score = 91.7 bits (46), Expect = 3e-18
Identities = 46/46 (100%)
Strand = Plus / Minus
Query: 14 tactccctccgttcctaaatacttgtctttctaggcatttcaacaa 59
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 tactccctccgttcctaaatacttgtctttctaggcatttcaacaa 55
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 131 tcatttgaaatgtctagaaagacaaata 158
||||||||||||||||||||||||||||
Sbjct: 51 tcatttgaaatgtctagaaagacaaata 24
Score = 46.1 bits (23), Expect = 2e-04
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 14 tactccctccgttcctaaatacttgtctttctaggcatttcaa 56
|||||||||| || |||||| |||||||||||| ||||||||
Sbjct: 5 tactccctccatttttaaatatttgtctttctagacatttcaa 47
>RF00906;MIR1122;FJ548567.1/3141-3305 4513:Hordeum vulgare
Length = 165
Score = 77.8 bits (39), Expect = 5e-14
Identities = 97/115 (84%), Gaps = 1/115 (0%)
Strand = Plus / Plus
Query: 14 tactccctccgttcctaaatacttgtctttctaggcatttcaacaagtgactacatacgg 73
|||||||||||||||||||| |||||| ||| ||||| ||| | ||||||| ||
Sbjct: 3 tactccctccgttcctaaatgtaagtctttttagagatttctctaaggggctacatatgg 62
Query: 74 agcaaaatgagtgaatctacactctaaaatatgtctacatacatccgtatgtagt 128
|||||||||||||||||| ||||| || |||||||| |||||||||||||||||
Sbjct: 63 agcaaaatgagtgaatctgtactct-aagtatgtctatatacatccgtatgtagt 116
>RF00906;MIR1122;AF338431.1/8563-8727 37682:Aegilops tauschii
Length = 165
Score = 75.8 bits (38), Expect = 2e-13
Identities = 41/42 (97%)
Strand = Plus / Minus
Query: 62 gactacatacggagcaaaatgagtgaatctacactctaaaat 103
||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 114 gactacatacgaagcaaaatgagtgaatctacactctaaaat 73
>RF00906;MIR1122;AJ400714.1/2947-2781 4565:Triticum aestivum (bread
wheat)
Length = 167
Score = 71.9 bits (36), Expect = 3e-12
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 66 acatacggagcaaaatgagtgaatctacactctaaaatatgtctacatacatccgtatgt 125
|||||||||| |||||||||||| ||| |||||||||| |||||||||||||||||||
Sbjct: 53 acatacggagtaaaatgagtgaacctatactctaaaatgcatctacatacatccgtatgt 112
>RF00906;MIR1122;AY853252.1/232318-232152 4513:Hordeum vulgare
Length = 167
Score = 61.9 bits (31), Expect = 3e-09
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 62 gactacatacggagcaaaatgagtgaatctacactctaaaatatgtctacatacatccgt 121
||||||||||||| ||||| | | || ||| || |||||||||||||| ||||||||||
Sbjct: 52 gactacatacggaacaaaacaaataaacctataccctaaaatatgtctatatacatccgt 111
Query: 122 atgtagt 128
|||||||
Sbjct: 112 atgtagt 118
>RF00906;MIR1122;AK252971.1/1469-1351 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 119
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 62 gactacatacggagcaaaatgagtgaatct 91
||||||||||||||||||||||||||||||
Sbjct: 52 gactacatacggagcaaaatgagtgaatct 81
>RF00906;MIR1122;DQ871219.1/152084-152250 85692:Triticum turgidum
subsp. dicoccoides
Length = 167
Score = 58.0 bits (29), Expect = 4e-08
Identities = 94/113 (83%), Gaps = 2/113 (1%)
Strand = Plus / Plus
Query: 13 ctactccctccgttcctaaatacttgtctttctaggcatttcaacaagtgactacatacg 72
|||||||||||||||||||||| |||||| || |||||| | | ||| |||||||
Sbjct: 4 ctactccctccgttcctaaatataagtctttggagagatttca-ctatagaccacatacg 62
Query: 73 gagcaaaatgagtgaatctacactctaaaatatgtctacatacatccgtatgt 125
||| ||||||||||||||||||| |||||| |||| ||||||||||||||
Sbjct: 63 gagaaaaatgagtgaatctacac-ataaaatgcatctatatacatccgtatgt 114
>RF00906;MIR1122;EU730896.1/84586-84679 15368:Brachypodium
distachyon
Length = 94
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 13 ctactccctccgttcctaaatacttgtc 40
||||||||||||||||||||||||||||
Sbjct: 91 ctactccctccgttcctaaatacttgtc 64
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 tactccctccgttcctaaatacttgtc 40
||||||||||||| |||||||||||||
Sbjct: 5 tactccctccgtttctaaatacttgtc 31
>RF00906;MIR1122;EU730901.1/155966-155873 15368:Brachypodium
distachyon
Length = 94
Score = 54.0 bits (27), Expect = 7e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 14 tactccctccgttcctaaatacttgtc 40
|||||||||||||||||||||||||||
Sbjct: 5 tactccctccgttcctaaatacttgtc 31
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 14 tactccctccgttcctaaatacttgtc 40
||||||||||||| |||||||||||||
Sbjct: 90 tactccctccgtttctaaatacttgtc 64
>RF00906;MIR1122;EU730899.1/47735-47828 15368:Brachypodium
distachyon
Length = 94
Score = 54.0 bits (27), Expect = 7e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 14 tactccctccgttcctaaatacttgtc 40
|||||||||||||||||||||||||||
Sbjct: 90 tactccctccgttcctaaatacttgtc 64
>RF00906;MIR1122;EU660899.1/111846-111744 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 103
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 tactccctccgttcctaaatacttgtc 40
||||||||||||||| |||||||||||
Sbjct: 5 tactccctccgttccaaaatacttgtc 31
>RF00906;MIR1122;EU282260.1/1308-1219 97361:Hordeum murinum
Length = 90
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 ctactccctccgttcctaaatacttgt 39
|||||||||| ||||||||||||||||
Sbjct: 4 ctactccctctgttcctaaatacttgt 30
>RF00906;MIR1122;AF459639.1/191055-190921 4568:Triticum monococcum
Length = 135
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 13 ctactccctccgttcctaaatacttgtctt 42
|||||||||||||||| || ||||||||||
Sbjct: 132 ctactccctccgttccaaattacttgtctt 103
>RF00906;MIR1122;DQ123819.1/2832-2966 4571:Triticum turgidum
Length = 135
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 13 ctactccctccgttcctaaatacttgtctt 42
|||||||||||||||| || ||||||||||
Sbjct: 132 ctactccctccgttccaaattacttgtctt 103
>RF00906;MIR1122;EU812563.1/51726-51572 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 155
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 64 ctacatacggagcaaaatgagt 85
||||||||||||||||||||||
Sbjct: 101 ctacatacggagcaaaatgagt 80
>RF00906;MIR1122;AJ300144.1/1569-1477 4513:Hordeum vulgare
Length = 93
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 14 tactccctccgttcctaaatacttgt 39
||||||||| ||||||||||||||||
Sbjct: 89 tactccctctgttcctaaatacttgt 64
>RF00906;MIR1122;AACV01003934.1/29289-29133 39947:Oryza sativa
Japonica Group
Length = 157
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 ctactccctccgttcctaaata 34
||||||||||||||||||||||
Sbjct: 4 ctactccctccgttcctaaata 25
