miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;FJ374610.1/683-817 4568:Triticum monococcum
Length = 135
Score = 89.7 bits (45), Expect = 9e-18
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 56 ttttagtattagatacatcccaatctagacgaatctaagacaagaattttgggaagaagg 115
|||||||||||||||||||| |||||||| ||||||||||||||||||||||| | |||
Sbjct: 67 ttttagtattagatacatccatatctagacaaatctaagacaagaattttgggacggagg 126
Query: 116 gagta 120
|||||
Sbjct: 127 gagta 131
Score = 54.0 bits (27), Expect = 5e-07
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 67 gatacatcccaatctagacgaatctaagacaagaattttggga 109
|||||||||| || |||| |||||||||||||||||||||||
Sbjct: 58 gatacatccctatttagaaaaatctaagacaagaattttggga 16
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 9 aaatactccctccgtccaaaaatacatgtcttagat 44
||||||||||||||||| ||||| | ||||||||||
Sbjct: 134 aaatactccctccgtcccaaaattcttgtcttagat 99
>RF00906;MIR1122;AY821733.1/621-487 4568:Triticum monococcum
Length = 135
Score = 71.9 bits (36), Expect = 2e-12
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 56 ttttagtattagatacatcccaatctagacgaatctaagacaagaattttgg 107
|||||||||||||||||||| |||||| | |||||||||||||||||||||
Sbjct: 67 ttttagtattagatacatccgtatctaggcaaatctaagacaagaattttgg 118
Score = 60.0 bits (30), Expect = 8e-09
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 67 gatacatcccaatctagacgaatctaagacaagaattttgggaagaagggagta 120
||||||||| || ||||| ||||||||||||||||||||||| | ||||||||
Sbjct: 58 gatacatccgtatttagacaaatctaagacaagaattttgggacggagggagta 5
>RF00906;MIR1122;EU660895.1/53244-53110 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 61.9 bits (31), Expect = 2e-09
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 68 atacatcccaatctagacgaatctaagacaagaattttgggaagaagggagtagt 122
|||||||| || ||||| ||||||||||||||||||||||| | ||||||||||
Sbjct: 79 atacatccgtatttagacaaatctaagacaagaattttgggatggagggagtagt 133
Score = 50.1 bits (25), Expect = 7e-06
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 56 ttttagtattagatacatcccaatctagacgaatctaagacaagaattttgggaagaagg 115
||||||||||| |||||| |||||||| ||| |||||||||||||||| || | |||
Sbjct: 69 ttttagtattaaatacatatgtatctagacaaatgtaagacaagaattttgagacggagg 10
Query: 116 gagta 120
|||||
Sbjct: 9 gagta 5
>RF00906;MIR1122;AM932686.1/57613-57747 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 61.9 bits (31), Expect = 2e-09
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 67 gatacatcccaatctagacgaatctaagacaagaattttggga 109
||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 58 gatacatccgtatctagacaaatctaagacaagaattttggga 16
Score = 61.9 bits (31), Expect = 2e-09
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 56 ttttagtattagatacatcccaatctagacgaatctaagacaagaattttgggaagaagg 115
|||| |||||||||||||| |||||||| ||||||||||||||| ||||||| |||
Sbjct: 67 ttttcgtattagatacatctgtatctagacaaatctaagacaagaaatttgggacagagg 126
Query: 116 gagtagt 122
|||||||
Sbjct: 127 gagtagt 133
>RF00906;MIR1122;AY485644.1/84291-84425 4568:Triticum monococcum
Length = 135
Score = 60.0 bits (30), Expect = 8e-09
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 56 ttttagtattagatacatcccaatctagacgaatctaagacaagaattttggga 109
||||||| |||||||||||| ||||| || ||| |||||||||||||||||||
Sbjct: 67 ttttagtgttagatacatccgtatctaaacaaatgtaagacaagaattttggga 120
>RF00906;MIR1122;AJ704455.1/466-601 4513:Hordeum vulgare
Length = 136
Score = 60.0 bits (30), Expect = 8e-09
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 65 tagatacatcccaatctagacgaatctaagacaagaattttgggaagaagggagtagt 122
||||||||| | |||||||| ||| ||||||||||||||||||| | ||||||||||
Sbjct: 60 tagatacattcatatctagacaaatgtaagacaagaattttgggacggagggagtagt 3
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 91 taagacaagaattttgggaagaagggagta 120
||||||||||||||||||| | ||||||||
Sbjct: 103 taagacaagaattttgggacggagggagta 132
>RF00906;MIR1122;EU660901.1/93085-92951 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 58.0 bits (29), Expect = 3e-08
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 56 ttttagtattagatacatcccaatctagacgaatctaagacaagaattttgggaagaagg 115
|||| ||||||||||||||| |||||||| || ||| ||||||||||||||| | |||
Sbjct: 67 tttttgtattagatacatccgtatctagacaaagctacaacaagaattttgggacggagg 126
Query: 116 gagta 120
|||||
Sbjct: 127 gagta 131
>RF00906;MIR1122;EU626553.1/30213-30109 4572:Triticum urartu
Length = 105
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 87 aatctaagacaagaattttgggaagaagggagtagt 122
||||||||||||||||||||||| | ||||||||||
Sbjct: 68 aatctaagacaagaattttgggacggagggagtagt 103
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 78 atctagacgaatctaagacaagaattttgg 107
||||||| |||||||||||||||||||||
Sbjct: 46 atctagataaatctaagacaagaattttgg 17
>RF00906;MIR1122;AF277239.1/1056-1190 37679:Heteranthelium piliferum
Length = 135
Score = 56.0 bits (28), Expect = 1e-07
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 65 tagatacatcccaatctagacgaatctaagacaagaattttgggaagaagggagta 120
||||||||||| || ||||| |||||| |||||||||||||||| | ||||||||
Sbjct: 60 tagatacatccgtatttagacaaatctatgacaagaattttgggacggagggagta 5
Score = 52.0 bits (26), Expect = 2e-06
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 56 ttttagtattagatacatcccaatctagacgaatctaagacaagaattttgggaagaagg 115
||||||| ||||| |||| | ||||| || |||||||||| |||||||||||| | |||
Sbjct: 67 ttttagtgttagacacattcatatctaaacaaatctaagacnagaattttgggacggagg 126
Query: 116 gagta 120
|||||
Sbjct: 127 gagta 131
>RF00906;MIR1122;X73528.1/281-181 4565:Triticum aestivum (bread
wheat)
Length = 101
Score = 54.0 bits (27), Expect = 5e-07
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 82 agacgaatctaagacaagaattttgggaagaagggagta 120
|||| ||||||||||||||||||||| | ||||||||||
Sbjct: 43 agacaaatctaagacaagaattttggaacgaagggagta 5
Score = 52.0 bits (26), Expect = 2e-06
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 78 atctagacgaatctaagacaagaattttgggaagaagggagtagta 123
|||||||| ||||||||||||||||||| || | |||||||||||
Sbjct: 55 atctagacaaatctaagacaagaattttaagatggagggagtagta 100
>RF00906;MIR1122;AP009567.1/9225-9090 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 136
Score = 54.0 bits (27), Expect = 5e-07
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 63 attagatacatcccaatctagacgaatctaagacaagaatttt 105
||||||||||| | |||||||| |||||||||||||||||||
Sbjct: 62 attagatacattcatatctagacaaatctaagacaagaatttt 20
>RF00906;MIR1122;DJ023121.1/176-54 4513:Hordeum vulgare
Length = 123
Score = 54.0 bits (27), Expect = 5e-07
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 78 atctagacgaatctaagacaagaattttgggaagaagggagta 120
|||||||| ||||||||||||||||||| ||| | ||||||||
Sbjct: 47 atctagacaaatctaagacaagaattttaggacggagggagta 5
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 11 atactccctccgtccaaaaatacatgtcttagat 44
||||||||||||||| ||||| | ||||||||||
Sbjct: 4 atactccctccgtcctaaaattcttgtcttagat 37
>RF00906;MIR1122;AY853252.1/217307-217173 4513:Hordeum vulgare
Length = 135
Score = 54.0 bits (27), Expect = 5e-07
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 56 ttttagtattagatacatcccaatctagacgaatctaagacaagaattttgggaagaagg 115
||||||| |||||||||||| ||||||| |||| ||||||||||||||||| | |||
Sbjct: 67 ttttagtgttagatacatccgtatctagataaatcctagacaagaattttgggacggagg 126
Query: 116 gagtagt 122
||||||
Sbjct: 127 tagtagt 133
>RF00906;MIR1122;EU096089.1/14944-15085 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 142
Score = 54.0 bits (27), Expect = 5e-07
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 78 atctagacgaatctaagacaagaattttgggaagaagggagta 120
|||||||| ||||||||||||||| ||||||| | ||||||||
Sbjct: 47 atctagacaaatctaagacaagaagtttgggacggagggagta 5
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 81 tagacgaatctaagacaagaattttgggaagaagggagta 120
||||| || |||||||||||||||||||| | ||||||||
Sbjct: 99 tagacaaacctaagacaagaattttgggacggagggagta 138
>RF00906;MIR1122;EF540321.1/52965-52831 4571:Triticum turgidum
Length = 135
Score = 52.0 bits (26), Expect = 2e-06
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 56 ttttagtattagatacatcccaatctagacgaatctaagacaagaattttggga 109
||||||| ||||||||||| ||||| || ||| |||||||||||||||||||
Sbjct: 69 ttttagtgttagatacatctttatctaaacaaatgtaagacaagaattttggga 16
Score = 50.1 bits (25), Expect = 7e-06
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 65 tagatacatcccaatctagacgaatctaagacaagaattttggga 109
||||||||||| || ||||| ||| |||||||||||||||||||
Sbjct: 76 tagatacatccgtatttagacaaatttaagacaagaattttggga 120
>RF00906;MIR1122;AF427791.1/222786-222921 4513:Hordeum vulgare
Length = 136
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 91 taagacaagaattttgggaagaagggagta 120
||||||||||||||||||| ||||||||||
Sbjct: 103 taagacaagaattttgggacgaagggagta 132
Score = 48.1 bits (24), Expect = 3e-05
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 65 tagatacatcccaatctagacgaatctaagacaagaattttgggaagaagggagta 120
||||||||| | ||||| || |||||||||||| |||||||||| | ||||||||
Sbjct: 60 tagatacattcatatctaaacaaatctaagacaataattttgggacggagggagta 5
>RF00906;MIR1122;DQ145528.1/676-542 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 135
Score = 52.0 bits (26), Expect = 2e-06
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 81 tagacgaatctaagacaagaattttgggaagaagggagtagt 122
||||| ||||||||||||||||||||||| |||||| ||||
Sbjct: 44 tagacaaatctaagacaagaattttgggacaaagggaatagt 3
Score = 46.1 bits (23), Expect = 1e-04
Identities = 49/55 (89%), Gaps = 2/55 (3%)
Strand = Plus / Plus
Query: 56 ttttagtatt-agatacatcccaatctagacgaatctaagacaagaattttggga 109
|||||||||| |||||||||| ||||||| ||| |||||||||||||||||||
Sbjct: 67 ttttagtatttagatacatccatttctagac-aatttaagacaagaattttggga 120
>RF00906;MIR1122;AY887089.1/1801-1936 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 136
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 88 atctaagacaagaattttgggaagaagggagta 120
|||||||||||||||||||||| | ||||||||
Sbjct: 100 atctaagacaagaattttgggacggagggagta 132
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 11 atactccctccgtccaaaaatacatgtcttagat 44
||||||||||||||| ||||| | ||||||||||
Sbjct: 133 atactccctccgtcccaaaattcttgtcttagat 100
>RF00906;MIR1122;AY853252.1/33762-33628 4513:Hordeum vulgare
Length = 135
Score = 50.1 bits (25), Expect = 7e-06
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 64 ttagatacatcccaatctagacgaatctaagacaagaattttgggaagaagggagta 120
|||||||||||| ||||||| || |||||||||||||||||| | | ||||||||
Sbjct: 75 ttagatacatccagttctagacaaagctaagacaagaattttggaatggagggagta 131
>RF00906;MIR1122;EU862588.1/607-710 4516:Hordeum bulbosum
Length = 104
Score = 50.1 bits (25), Expect = 7e-06
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 57 tttagtattagatacatcccaatctagacgaatctaagacaagaattttggga 109
|||||| |||||||||||| ||||||| ||||||||||||| ||||||||
Sbjct: 37 tttagtgttagatacatccgtatctagataaatctaagacaagctttttggga 89
>RF00906;MIR1122;DQ890018.1/183-48 77009:Hordeum vulgare subsp.
spontaneum
Length = 136
Score = 48.1 bits (24), Expect = 3e-05
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 65 tagatacatcccaatctagacgaatctaagacaagaattttgggaagaagggagta 120
||||||||| | ||||| || ||||||||||||||||||||| | | ||||||||
Sbjct: 60 tagatacattcatatctaaacaaatctaagacaagaattttggaacggagggagta 5
Score = 44.1 bits (22), Expect = 5e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 79 tctagacgaatctaagacaagaattttgggaagaagggagta 120
||||||| || |||||||||||||||| ||| | ||||||||
Sbjct: 91 tctagacaaagctaagacaagaattttaggacggagggagta 132
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 9 aaatactccctccgtccaaaaatacatgtcttag 42
||||||||||||||||| ||||| | ||||||||
Sbjct: 135 aaatactccctccgtcctaaaattcttgtcttag 102
>RF00906;MIR1122;DQ537336.1/120340-120474 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 10 aatactccctccgtccaaaaata 32
|||||||||||||||||||||||
Sbjct: 133 aatactccctccgtccaaaaata 111
>RF00906;MIR1122;AY235464.1/714-838 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 9 aaatactccctccgtccaaaaatacatgtcttaga 43
||||||||||||||||| ||||||| |||| ||||
Sbjct: 2 aaatactccctccgtcccaaaatacttgtcgtaga 36
>RF00906;MIR1122;DQ890004.1/48-183 4513:Hordeum vulgare
Length = 136
Score = 46.1 bits (23), Expect = 1e-04
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 65 tagatacatcccaatctagacgaatctaagacaagaattttgg 107
||||||||| | ||||| || |||||||||||||||||||||
Sbjct: 77 tagatacattcatatctaaacaaatctaagacaagaattttgg 119
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 9 aaatactccctccgtccaaaaatacatgtcttag 42
||||||||||||||||| ||||| | ||||||||
Sbjct: 2 aaatactccctccgtcctaaaattcttgtcttag 35
Score = 44.1 bits (22), Expect = 5e-04
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 79 tctagacgaatctaagacaagaattttgggaagaagggagta 120
||||||| || |||||||||||||||| ||| | ||||||||
Sbjct: 46 tctagacaaagctaagacaagaattttaggacggagggagta 5
>RF00906;MIR1122;AY643843.1/31186-31309 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 10 aatactccctccgtccaaaaatacatgtcttaga 43
||||||||||||||||| |||||| |||| ||||
Sbjct: 3 aatactccctccgtccagaaatacttgtcctaga 36
