miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;CT827956.1/52813-52688 4530:Oryza sativa (rice)
Length = 126
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 58 tattttgggacggatggagtatta 81
||||||||||||||||||||||||
Sbjct: 25 tattttgggacggatggagtatta 2
>RF00906;MIR1122;AAAA02022081.1/35373-35236 39946:Oryza sativa
Indica Group
Length = 138
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 58 tattttgggacggatggagtatta 81
||||||||||||||||||||||||
Sbjct: 25 tattttgggacggatggagtatta 2
>RF01058;MIR806;AAAA02002634.1/48844-49087 39946:Oryza sativa
Indica Group
Length = 244
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 57 ttattttgggacggatggagtat 79
|||||||||||||||||||||||
Sbjct: 23 ttattttgggacggatggagtat 1
>RF00906;MIR1122;AK249560.1/988-1092 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 57 ttattttgggacggatggagtat 79
|||||||||||||||||||||||
Sbjct: 26 ttattttgggacggatggagtat 4
>RF00906;MIR1122;CU302344.1/39855-39991 3880:Medicago truncatula
(barrel medic)
Length = 137
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 59 attttgggacggatggagtatt 80
||||||||||||||||||||||
Sbjct: 24 attttgggacggatggagtatt 3
>RF00906;MIR1122;DQ900687.1/24296-24401 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 106
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 32 tactccctccgtccttaaataagtgt 57
||||||||||||||| ||||||||||
Sbjct: 102 tactccctccgtcctaaaataagtgt 77
>RF00906;MIR1122;AAAA02027999.1/6846-6708 39946:Oryza sativa
Indica Group
Length = 139
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 58 tattttgggacggatggagtat 79
||||||||||||||||||||||
Sbjct: 25 tattttgggacggatggagtat 4
>RF00906;MIR1122;AL606686.3/85873-85713 39947:Oryza sativa
Japonica Group
Length = 161
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 58 tattttgggacggatggagtat 79
||||||||||||||||||||||
Sbjct: 25 tattttgggacggatggagtat 4
>RF00906;MIR1122;AF172282.1/315636-315513 4530:Oryza sativa (rice)
Length = 124
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 tattttgggacggatggagtat 79
||||||||||||||||||||||
Sbjct: 100 tattttgggacggatggagtat 121
>RF00906;MIR1122;AP008213.1/3607812-3607697 39947:Oryza sativa
Japonica Group
Length = 116
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 58 tattttgggacggatggagtat 79
||||||||||||||||||||||
Sbjct: 25 tattttgggacggatggagtat 4
>RF00906;MIR1122;AC123523.2/18009-18132 39947:Oryza sativa Japonica
Group
Length = 124
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 tattttgggacggatggagtat 79
||||||||||||||||||||||
Sbjct: 100 tattttgggacggatggagtat 121
>RF00906;MIR1122;AAAA02019483.1/16379-16491 39946:Oryza sativa
Indica Group
Length = 113
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 56 gttattttgggacggatggagtatta 81
|||||||||||||||| |||||||||
Sbjct: 87 gttattttgggacggagggagtatta 112
>RF00906;MIR1122;AAAA02006241.1/8357-8245 39946:Oryza sativa
Indica Group
Length = 113
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 57 ttattttgggacggatggagta 78
||||||||||||||||||||||
Sbjct: 26 ttattttgggacggatggagta 5
