miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY821693.1/1381-1215 58935:Australopyrum velutinum
Length = 167
Score = 105 bits (53), Expect = 2e-22
Identities = 102/117 (87%), Gaps = 1/117 (0%)
Strand = Plus / Minus
Query: 21 atactccctccgttcctaaatagttgtctttctagacatttcaaatgagtactacatacg 80
|||||||||||||||||||||| |||||| |||| |||| || | | ||||||||||
Sbjct: 167 atactccctccgttcctaaatataagtctttttagagatttgaa-tatggactacatacg 109
Query: 81 gatgtatgtagacatattttagagtgtagattcactcattttgcttcgtaagtagtc 137
|||| || ||||| ||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 108 gatgaatatagacgtattttagagtgtagattcactcattttgctccgtatgtagtc 52
>RF00906;MIR1122;AF427791.1/1754-1590 4513:Hordeum vulgare
Length = 165
Score = 93.7 bits (47), Expect = 9e-19
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 71 actacatacggatgtatgtagacatattttagagtgtagattcactcattttgcttcgta 130
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 49 actacatacggatgtacatagacatattttagagtatagattcactcattttgctccgta 108
Query: 131 agtagtc 137
||||||
Sbjct: 109 tgtagtc 115
>RF00906;MIR1122;EU545231.1/2974-3138 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 165
Score = 91.7 bits (46), Expect = 4e-18
Identities = 97/114 (85%)
Strand = Plus / Minus
Query: 22 tactccctccgttcctaaatagttgtctttctagacatttcaaatgagtactacatacgg 81
||||||||||||||||||||| |||||| |||| |||||| | |||||||||||
Sbjct: 164 tactccctccgttcctaaatataagtctttgtagagatttcactaatggactacatacgg 105
Query: 82 atgtatgtagacatattttagagtgtagattcactcattttgcttcgtaagtag 135
|||||| |||||||| ||||||||||| ||||| |||||||||| |||| ||||
Sbjct: 104 atgtatatagacatactttagagtgtacattcaatcattttgctccgtatgtag 51
>RF00906;MIR1122;AF521177.1/76812-76977 4513:Hordeum vulgare
Length = 166
Score = 87.7 bits (44), Expect = 6e-17
Identities = 98/116 (84%)
Strand = Plus / Plus
Query: 22 tactccctccgttcctaaatagttgtctttctagacatttcaaatgagtactacatacgg 81
||||||||||||||||||||| |||||| |||| ||||| | ||||||| |||
Sbjct: 1 tactccctccgttcctaaatataagtctttttagaggtttcactagtagactacattcgg 60
Query: 82 atgtatgtagacatattttagagtgtagattcactcattttgcttcgtaagtagtc 137
|||||| ||||||||||||||| | ||||||||||||||||||| |||| ||||||
Sbjct: 61 atgtatatagacatattttagaatatagattcactcattttgctccgtatgtagtc 116
>RF00906;MIR1122;DQ352178.1/5805-5640 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 166
Score = 85.7 bits (43), Expect = 2e-16
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 71 actacatacggatgtatgtagacatattttagagtgtagattcactcattttgcttcgta 130
|||||||||||||||| ||||||||||||||||| ||||||| ||||||||||| ||||
Sbjct: 52 actacatacggatgtacatagacatattttagagtatagattcgctcattttgctccgta 111
Query: 131 agtagtc 137
||||||
Sbjct: 112 tgtagtc 118
>RF00906;MIR1122;AY013246.1/66605-66771 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 167
Score = 77.8 bits (39), Expect = 5e-14
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 71 actacatacggatgtatgtagacatattttagagtgtagattcactcattttgcttcgta 130
||||||||||||||||||||| |||||||| | |||| |||||||||||||||| ||||
Sbjct: 50 actacatacggatgtatgtagtcatattttgggatgtaaattcactcattttgctccgta 109
Query: 131 agtagtc 137
||||||
Sbjct: 110 tgtagtc 116
>RF00906;MIR1122;AF338431.1/8563-8727 37682:Aegilops tauschii
Length = 165
Score = 75.8 bits (38), Expect = 2e-13
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 96 attttagagtgtagattcactcattttgcttcgtaagtagtc 137
||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 73 attttagagtgtagattcactcattttgcttcgtatgtagtc 114
>RF00906;MIR1122;FJ548567.1/3141-3305 4513:Hordeum vulgare
Length = 165
Score = 71.9 bits (36), Expect = 3e-12
Identities = 88/104 (84%), Gaps = 1/104 (0%)
Strand = Plus / Minus
Query: 22 tactccctccgttcctaaatagttgtctttctagacatttcaaatgagtactacatacgg 81
||||||||||||||||||||| |||||| |||| ||||| | | |||||||||||
Sbjct: 165 tactccctccgttcctaaatataagtctttttagaagtttcactaggggactacatacgg 106
Query: 82 atgtatgtagacatattttagagtgtagattcactcattttgct 125
|||||| |||||||| ||||||| ||||||||||||||||||
Sbjct: 105 atgtatatagacata-cttagagtacagattcactcattttgct 63
>RF00906;MIR1122;DQ537335.1/79725-79622 4565:Triticum aestivum
(bread wheat)
Length = 104
Score = 69.9 bits (35), Expect = 1e-11
Identities = 41/43 (95%)
Strand = Plus / Minus
Query: 22 tactccctccgttcctaaatagttgtctttctagacatttcaa 64
||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 100 tactccctccgttcctaaatacttgtctttctaggcatttcaa 58
Score = 63.9 bits (32), Expect = 8e-10
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 21 atactccctccgttcctaaatagttgtctttctagacatttcaaatga 68
||||||||||| || |||||| |||||||||||||||||||||||||
Sbjct: 4 atactccctccatttttaaatatttgtctttctagacatttcaaatga 51
Score = 46.1 bits (23), Expect = 2e-04
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 140 ttgttgaaatgcctanaaanacaagtanttangaa 174
||||||||||||||| ||| ||||||| ||| |||
Sbjct: 55 ttgttgaaatgcctagaaagacaagtatttaggaa 89
>RF00906;MIR1122;AJ400714.1/2947-2781 4565:Triticum aestivum (bread
wheat)
Length = 167
Score = 58.0 bits (29), Expect = 5e-08
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 74 acatacggatgtatgtagacatattttagagtgtagattcactcatttt 122
||||||||||||||||||| |||||||||| ||| ||||||||||||
Sbjct: 112 acatacggatgtatgtagatgcattttagagtataggttcactcatttt 64
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 atactccctccgttcctaaata 42
||||||||||||||||||||||
Sbjct: 1 atactccctccgttcctaaata 22
>RF00906;MIR1122;AY853252.1/232318-232152 4513:Hordeum vulgare
Length = 167
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 71 actacatacggatgtatgtagacatattttag 102
||||||||||||||||| ||||||||||||||
Sbjct: 118 actacatacggatgtatatagacatattttag 87
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 21 atactccctccgttcctaaata 42
||||||||||||||||||||||
Sbjct: 167 atactccctccgttcctaaata 146
>RF00906;MIR1122;EU730899.1/47735-47828 15368:Brachypodium
distachyon
Length = 94
Score = 54.0 bits (27), Expect = 8e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 18 tatatactccctccgttcctaaatagttgtc 48
||||||||||||||||||||||||| |||||
Sbjct: 94 tatatactccctccgttcctaaatacttgtc 64
>RF00906;MIR1122;EU812563.1/51726-51572 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 155
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 18 tatatactccctccgttcctaaata 42
|||||||||||||||||||||||||
Sbjct: 1 tatatactccctccgttcctaaata 25
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 19 atatactccctccgttcctaaata 42
||||||||||||||||||||||||
Sbjct: 154 atatactccctccgttcctaaata 131
>RF00906;MIR1122;AK248896.1/138-279 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 142
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 19 atatactccctccgttcctaaata 42
||||||||||||||||||||||||
Sbjct: 141 atatactccctccgttcctaaata 118
>RF00906;MIR1122;AC129718.2/26799-26917 39947:Oryza sativa
Japonica Group
Length = 119
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 19 atatactccctccgttcctaaata 42
||||||||||||||||||||||||
Sbjct: 2 atatactccctccgttcctaaata 25
>RF00906;MIR1122;AP008207.1/21121800-21121682 39947:Oryza sativa
Japonica Group
Length = 119
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 19 atatactccctccgttcctaaata 42
||||||||||||||||||||||||
Sbjct: 118 atatactccctccgttcctaaata 95
>RF00906;MIR1122;AAAA02021208.1/38295-38158 39946:Oryza sativa
Indica Group
Length = 138
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 19 atatactccctccgttcctaaata 42
||||||||||||||||||||||||
Sbjct: 2 atatactccctccgttcctaaata 25
>RF00906;MIR1122;AK252971.1/1469-1351 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 119
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 tatactccctccgttcctaaata 42
|||||||||||||||||||||||
Sbjct: 3 tatactccctccgttcctaaata 25
Score = 44.1 bits (22), Expect = 8e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 108 agattcactcattttgcttcgtaagtagtc 137
|||||||||||||||||| |||| ||||||
Sbjct: 81 agattcactcattttgctccgtatgtagtc 52
>RF00906;MIR1122;EU730901.1/155966-155873 15368:Brachypodium
distachyon
Length = 94
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 22 tactccctccgttcctaaatagttgtc 48
||||||||||||||||||||| |||||
Sbjct: 5 tactccctccgttcctaaatacttgtc 31
>RF00906;MIR1122;EU730896.1/84586-84679 15368:Brachypodium
distachyon
Length = 94
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 22 tactccctccgttcctaaatagttgtc 48
||||||||||||||||||||| |||||
Sbjct: 90 tactccctccgttcctaaatacttgtc 64
>RF01058;MIR806;AP008208.1/25882787-25882549 39947:Oryza sativa
Japonica Group
Length = 239
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 21 atactccctccgttcctaaata 42
||||||||||||||||||||||
Sbjct: 239 atactccctccgttcctaaata 218
>RF01058;MIR806;AP008209.1/22697310-22697556 39947:Oryza sativa
Japonica Group
Length = 247
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 atactccctccgttcctaaata 42
||||||||||||||||||||||
Sbjct: 1 atactccctccgttcctaaata 22
>RF01058;MIR806;AC116601.1/158497-158738 39947:Oryza sativa
Japonica Group
Length = 242
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 21 atactccctccgttcctaaatagttg 46
|||||||||||||| |||||||||||
Sbjct: 1 atactccctccgtttctaaatagttg 26
