miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF427791.1/1754-1590 4513:Hordeum vulgare
Length = 165
Score = 95.6 bits (48), Expect = 2e-19
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 64 acatacggatgtatgtagacatattttagagtttagattcactcattttactccgtatgt 123
||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 52 acatacggatgtacatagacatattttagagtatagattcactcattttgctccgtatgt 111
Query: 124 agtc 127
||||
Sbjct: 112 agtc 115
>RF00906;MIR1122;DQ537335.1/79725-79622 4565:Triticum aestivum
(bread wheat)
Length = 104
Score = 93.7 bits (47), Expect = 8e-19
Identities = 47/47 (100%)
Strand = Plus / Plus
Query: 130 ttgttgaaatgcctagaaagacaagtatttaggaacggagggagtac 176
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55 ttgttgaaatgcctagaaagacaagtatttaggaacggagggagtac 101
Score = 77.8 bits (39), Expect = 5e-14
Identities = 42/43 (97%)
Strand = Plus / Minus
Query: 12 tactccctccgttcctaaatacttgtctttctagacatttcaa 54
|||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 100 tactccctccgttcctaaatacttgtctttctaggcatttcaa 58
Score = 65.9 bits (33), Expect = 2e-10
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 11 atactccctccgttcctaaatacttgtctttctagacatttcaaatgaa 59
||||||||||| || |||||| ||||||||||||||||||||||||||
Sbjct: 4 atactccctccatttttaaatatttgtctttctagacatttcaaatgaa 52
Score = 46.1 bits (23), Expect = 2e-04
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 133 ttgaaatgcctagaaagacaagtatttaggaacggagggagta 175
|||||||| |||||||||||| |||||| || ||||||||||
Sbjct: 47 ttgaaatgtctagaaagacaaatatttaaaaatggagggagta 5
>RF00906;MIR1122;DQ352178.1/5805-5640 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 166
Score = 87.7 bits (44), Expect = 5e-17
Identities = 59/64 (92%)
Strand = Plus / Plus
Query: 64 acatacggatgtatgtagacatattttagagtttagattcactcattttactccgtatgt 123
||||||||||||| ||||||||||||||||| ||||||| |||||||| ||||||||||
Sbjct: 55 acatacggatgtacatagacatattttagagtatagattcgctcattttgctccgtatgt 114
Query: 124 agtc 127
||||
Sbjct: 115 agtc 118
>RF00906;MIR1122;AF521177.1/76812-76977 4513:Hordeum vulgare
Length = 166
Score = 87.7 bits (44), Expect = 5e-17
Identities = 59/64 (92%)
Strand = Plus / Plus
Query: 64 acatacggatgtatgtagacatattttagagtttagattcactcattttactccgtatgt 123
|||| ||||||||| ||||||||||||||| | |||||||||||||||| ||||||||||
Sbjct: 53 acattcggatgtatatagacatattttagaatatagattcactcattttgctccgtatgt 112
Query: 124 agtc 127
||||
Sbjct: 113 agtc 116
>RF00906;MIR1122;AY821693.1/1381-1215 58935:Australopyrum velutinum
Length = 167
Score = 87.7 bits (44), Expect = 5e-17
Identities = 59/64 (92%)
Strand = Plus / Minus
Query: 64 acatacggatgtatgtagacatattttagagtttagattcactcattttactccgtatgt 123
||||||||||| || ||||| ||||||||||| |||||||||||||||| ||||||||||
Sbjct: 115 acatacggatgaatatagacgtattttagagtgtagattcactcattttgctccgtatgt 56
Query: 124 agtc 127
||||
Sbjct: 55 agtc 52
>RF00906;MIR1122;AJ400714.1/2947-2781 4565:Triticum aestivum (bread
wheat)
Length = 167
Score = 81.8 bits (41), Expect = 3e-15
Identities = 56/61 (91%)
Strand = Plus / Minus
Query: 63 cacatacggatgtatgtagacatattttagagtttagattcactcattttactccgtatg 122
|||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||
Sbjct: 113 cacatacggatgtatgtagatgcattttagagtataggttcactcattttactccgtatg 54
Query: 123 t 123
|
Sbjct: 53 t 53
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 atactccctccgttcctaaata 32
||||||||||||||||||||||
Sbjct: 1 atactccctccgttcctaaata 22
>RF00906;MIR1122;EU545231.1/2974-3138 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 165
Score = 79.8 bits (40), Expect = 1e-14
Identities = 94/112 (83%)
Strand = Plus / Minus
Query: 64 acatacggatgtatgtagacatattttagagtttagattcactcattttactccgtatgt 123
|||||||||||||| |||||||| |||||||| || ||||| ||||||| ||||||||||
Sbjct: 112 acatacggatgtatatagacatactttagagtgtacattcaatcattttgctccgtatgt 53
Query: 124 agtcacttgttgaaatgcctagaaagacaagtatttaggaacggagggagta 175
|| || | |||||| || |||||| |||||||||||||||||||||
Sbjct: 52 agacatctagtgaaatcgcttaaaagacttatatttaggaacggagggagta 1
>RF00906;MIR1122;AY013246.1/66605-66771 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 167
Score = 71.9 bits (36), Expect = 3e-12
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 64 acatacggatgtatgtagacatattttagagtttagattcactcattttactccgtatgt 123
|||||||||||||||||| |||||||| | | || ||||||||||||| ||||||||||
Sbjct: 53 acatacggatgtatgtagtcatattttgggatgtaaattcactcattttgctccgtatgt 112
Query: 124 agtc 127
||||
Sbjct: 113 agtc 116
>RF00906;MIR1122;FJ548567.1/3141-3305 4513:Hordeum vulgare
Length = 165
Score = 63.9 bits (32), Expect = 7e-10
Identities = 93/112 (83%), Gaps = 1/112 (0%)
Strand = Plus / Minus
Query: 64 acatacggatgtatgtagacatattttagagtttagattcactcattttactccgtatgt 123
|||||||||||||| |||||||| || ||||| ||||||||||||||| |||| |||||
Sbjct: 113 acatacggatgtatatagacatactt-agagtacagattcactcattttgctccatatgt 55
Query: 124 agtcacttgttgaaatgcctagaaagacaagtatttaggaacggagggagta 175
|| | ||| ||||| ||| |||||| ||||||||||||||||||||
Sbjct: 54 agccccttagagaaatctctaaaaagacttacatttaggaacggagggagta 3
>RF00906;MIR1122;AF338431.1/8563-8727 37682:Aegilops tauschii
Length = 165
Score = 61.9 bits (31), Expect = 3e-09
Identities = 77/91 (84%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 86 attttagagtttagattcactcattttactccgtatgtagtcacttgttgaaatgcctag 145
|||||||||| |||||||||||||||| || ||||||||||| | | |||||| |||
Sbjct: 73 attttagagtgtagattcactcattttgcttcgtatgtagtc-catagtgaaatctctac 131
Query: 146 aaagacaagtatttaggaacggagggagtac 176
| |||| ||||||||||||||||||||||
Sbjct: 132 agagacttatatttaggaacggagggagtac 162
>RF00906;MIR1122;EU730901.1/155966-155873 15368:Brachypodium
distachyon
Length = 94
Score = 58.0 bits (29), Expect = 4e-08
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 149 gacaagtatttaggaacggagggagtact 177
|||||||||||||||||||||||||||||
Sbjct: 31 gacaagtatttaggaacggagggagtact 3
Score = 54.0 bits (27), Expect = 7e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 12 tactccctccgttcctaaatacttgtc 38
|||||||||||||||||||||||||||
Sbjct: 5 tactccctccgttcctaaatacttgtc 31
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 149 gacaagtatttaggaacggagggagtact 177
||||||||||||| |||||||||||||||
Sbjct: 64 gacaagtatttagaaacggagggagtact 92
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 12 tactccctccgttcctaaatacttgtc 38
||||||||||||| |||||||||||||
Sbjct: 90 tactccctccgtttctaaatacttgtc 64
>RF00906;MIR1122;EU730899.1/47735-47828 15368:Brachypodium
distachyon
Length = 94
Score = 58.0 bits (29), Expect = 4e-08
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 10 tatactccctccgttcctaaatacttgtc 38
|||||||||||||||||||||||||||||
Sbjct: 92 tatactccctccgttcctaaatacttgtc 64
Score = 54.0 bits (27), Expect = 7e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 149 gacaagtatttaggaacggagggagta 175
|||||||||||||||||||||||||||
Sbjct: 64 gacaagtatttaggaacggagggagta 90
>RF00906;MIR1122;EU730896.1/84586-84679 15368:Brachypodium
distachyon
Length = 94
Score = 54.0 bits (27), Expect = 7e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 12 tactccctccgttcctaaatacttgtc 38
|||||||||||||||||||||||||||
Sbjct: 90 tactccctccgttcctaaatacttgtc 64
Score = 54.0 bits (27), Expect = 7e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 149 gacaagtatttaggaacggagggagta 175
|||||||||||||||||||||||||||
Sbjct: 64 gacaagtatttaggaacggagggagta 90
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 11 atactccctccgttcctaaatacttgtc 38
|||||||||||||| |||||||||||||
Sbjct: 4 atactccctccgtttctaaatacttgtc 31
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 149 gacaagtatttaggaacggagggagta 175
||||||||||||| |||||||||||||
Sbjct: 31 gacaagtatttagaaacggagggagta 5
>RF00906;MIR1122;AK252971.1/1469-1351 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 119
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 98 agattcactcattttactccgtatgtagtc 127
||||||||||||||| ||||||||||||||
Sbjct: 81 agattcactcattttgctccgtatgtagtc 52
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 ttatactccctccgttcctaaata 32
||||||||||||||||||||||||
Sbjct: 2 ttatactccctccgttcctaaata 25
>RF00906;MIR1122;DQ871219.1/152084-152250 85692:Triticum turgidum
subsp. dicoccoides
Length = 167
Score = 50.1 bits (25), Expect = 1e-05
Identities = 53/61 (86%), Gaps = 1/61 (1%)
Strand = Plus / Minus
Query: 63 cacatacggatgtatgtagacatattttagagtttagattcactcattttactccgtatg 122
||||||||||||||| |||| |||||| || |||||||||||||||| |||||||||
Sbjct: 115 cacatacggatgtatatagatgcattttat-gtgtagattcactcatttttctccgtatg 57
Query: 123 t 123
|
Sbjct: 56 t 56
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 155 tatttaggaacggagggagtact 177
|||||||||||||||||||||||
Sbjct: 145 tatttaggaacggagggagtact 167
>RF00906;MIR1122;AY853252.1/232318-232152 4513:Hordeum vulgare
Length = 167
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 64 acatacggatgtatgtagacatattttag 92
|||||||||||||| ||||||||||||||
Sbjct: 115 acatacggatgtatatagacatattttag 87
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 11 atactccctccgttcctaaata 32
||||||||||||||||||||||
Sbjct: 167 atactccctccgttcctaaata 146
>RF00906;MIR1122;AJ300144.1/1569-1477 4513:Hordeum vulgare
Length = 93
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 9 ttatactccctccgttcctaaatacttgt 37
|||||||||||| ||||||||||||||||
Sbjct: 92 ttatactccctctgttcctaaatacttgt 64
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 150 acaagtatttaggaacggagggagta 175
|||||||||||||||| |||||||||
Sbjct: 64 acaagtatttaggaacagagggagta 89
>RF00906;MIR1122;EU660899.1/111846-111744 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 103
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 11 atactccctccgttcctaaatacttgtc 38
|||||||||||||||| |||||||||||
Sbjct: 4 atactccctccgttccaaaatacttgtc 31
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 149 gacaagtatttaggaacggagggagta 175
||||||||||| |||||||||||||||
Sbjct: 31 gacaagtattttggaacggagggagta 5
>RF00906;MIR1122;DQ890018.1/183-48 77009:Hordeum vulgare subsp.
spontaneum
Length = 136
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 9 ttatactccctccgttcctaaatacttgtctt 40
|||||||||||||||||| |||| ||||||||
Sbjct: 2 ttatactccctccgttccaaaattcttgtctt 33
>RF00906;MIR1122;EU812563.1/51726-51572 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 155
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tatactccctccgttcctaaata 32
|||||||||||||||||||||||
Sbjct: 3 tatactccctccgttcctaaata 25
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 10 tatactccctccgttcctaaata 32
|||||||||||||||||||||||
Sbjct: 153 tatactccctccgttcctaaata 131
>RF00906;MIR1122;AK248896.1/138-279 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 142
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 10 tatactccctccgttcctaaata 32
|||||||||||||||||||||||
Sbjct: 140 tatactccctccgttcctaaata 118
>RF00906;MIR1122;AY013754.1/1932-2046 37682:Aegilops tauschii
Length = 115
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 149 gacaagtatttaggaacggagggagtactac 179
|||||||| || |||||||||||||||||||
Sbjct: 85 gacaagtaattcggaacggagggagtactac 115
>RF00906;MIR1122;AC129718.2/26799-26917 39947:Oryza sativa
Japonica Group
Length = 119
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tatactccctccgttcctaaata 32
|||||||||||||||||||||||
Sbjct: 3 tatactccctccgttcctaaata 25
>RF00906;MIR1122;AP008207.1/21121800-21121682 39947:Oryza sativa
Japonica Group
Length = 119
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 10 tatactccctccgttcctaaata 32
|||||||||||||||||||||||
Sbjct: 117 tatactccctccgttcctaaata 95
>RF00906;MIR1122;AAAA02021208.1/38295-38158 39946:Oryza sativa
Indica Group
Length = 138
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tatactccctccgttcctaaata 32
|||||||||||||||||||||||
Sbjct: 3 tatactccctccgttcctaaata 25
>RF01058;MIR806;AAAA02008217.1/23513-23265 39946:Oryza sativa Indica
Group
Length = 249
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 155 tatttaggaacggagggagtac 176
||||||||||||||||||||||
Sbjct: 228 tatttaggaacggagggagtac 249
>RF01058;MIR806;AP008208.1/25882787-25882549 39947:Oryza sativa
Japonica Group
Length = 239
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 11 atactccctccgttcctaaata 32
||||||||||||||||||||||
Sbjct: 239 atactccctccgttcctaaata 218
>RF01058;MIR806;AACV01015094.1/17201-16961 39947:Oryza sativa
Japonica Group
Length = 241
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 155 tatttaggaacggagggagtac 176
||||||||||||||||||||||
Sbjct: 220 tatttaggaacggagggagtac 241
>RF01058;MIR806;AP008209.1/22697310-22697556 39947:Oryza sativa
Japonica Group
Length = 247
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 atactccctccgttcctaaata 32
||||||||||||||||||||||
Sbjct: 1 atactccctccgttcctaaata 22
>RF01058;MIR806;AL606588.4/129622-129859 4530:Oryza sativa (rice)
Length = 238
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 155 tatttaggaacggagggagtac 176
||||||||||||||||||||||
Sbjct: 22 tatttaggaacggagggagtac 1
>RF00906;MIR1122;EU660894.1/143713-143848 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 136
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 151 caagtatttaggaacggagggagtac 176
||||||||| ||||||||||||||||
Sbjct: 108 caagtattttggaacggagggagtac 133
>RF00906;MIR1122;AF254799.1/46723-46588 4513:Hordeum vulgare
Length = 136
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 11 atactccctccgttcctaaatacttgtctt 40
|||||||||||||||| |||| ||||||||
Sbjct: 133 atactccctccgttccaaaattcttgtctt 104
>RF00906;MIR1122;FJ188379.1/3521-3613 4513:Hordeum vulgare
Length = 93
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 155 tatttaggaacggagggagtac 176
||||||||||||||||||||||
Sbjct: 69 tatttaggaacggagggagtac 90
>RF00906;MIR1122;EU282260.1/1308-1219 97361:Hordeum murinum
Length = 90
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 150 acaagtatttaggaacggagggagta 175
|||||||||||||||| |||||||||
Sbjct: 30 acaagtatttaggaacagagggagta 5
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 12 tactccctccgttcctaaatacttgt 37
||||||||| ||||||||||||||||
Sbjct: 5 tactccctctgttcctaaatacttgt 30
>RF00906;MIR1122;AP008214.1/20360044-20360123 39947:Oryza sativa
Japonica Group
Length = 80
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 155 tatttaggaacggagggagtac 176
||||||||||||||||||||||
Sbjct: 56 tatttaggaacggagggagtac 77
