miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AM932686.1/57613-57747 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 109 bits (55), Expect = 1e-23
Identities = 93/106 (87%)
Strand = Plus / Plus
Query: 13 gtacttcctccgtcccaaaatttttgtcttaaatttatctatatacggatgtatcanctc 72
||||| |||| ||||||||||| |||||||| |||| |||| |||||||||||||| ||
Sbjct: 4 gtactccctcggtcccaaaattcttgtcttagatttgtctagatacggatgtatcaagtc 63
Query: 73 acattttagtattagatacatctatatctatataaatataagacaa 118
||||||| ||||||||||||||| |||||| | |||| ||||||||
Sbjct: 64 acattttcgtattagatacatctgtatctagacaaatctaagacaa 109
>RF00906;MIR1122;EF540321.1/52965-52831 4571:Triticum turgidum
Length = 135
Score = 105 bits (53), Expect = 2e-22
Identities = 88/100 (88%)
Strand = Plus / Minus
Query: 19 cctccgtcccaaaatttttgtcttaaatttatctatatacggatgtatcanctcacattt 78
|||||||||||||||| ||||||||||||| |||| ||||||||||||| | ||||||
Sbjct: 126 cctccgtcccaaaattcttgtcttaaatttgtctaaatacggatgtatctagttacattt 67
Query: 79 tagtattagatacatctatatctatataaatataagacaa 118
|||| |||||||||||| |||||| | |||| ||||||||
Sbjct: 66 tagtgttagatacatctttatctaaacaaatgtaagacaa 27
>RF00906;MIR1122;AY821733.1/621-487 4568:Triticum monococcum
Length = 135
Score = 105 bits (53), Expect = 2e-22
Identities = 76/84 (90%)
Strand = Plus / Plus
Query: 11 atgtacttcctccgtcccaaaatttttgtcttaaatttatctatatacggatgtatcanc 70
||||||| |||||||||||||||| |||||||| |||| |||| ||||||||||||||
Sbjct: 2 atgtactccctccgtcccaaaattcttgtcttagatttgtctaaatacggatgtatcaag 61
Query: 71 tcacattttagtattagatacatc 94
|||| |||||||||||||||||||
Sbjct: 62 tcacgttttagtattagatacatc 85
Score = 60.0 bits (30), Expect = 9e-09
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 14 tacttcctccgtcccaaaatttttgtcttaaatttatctatatacggatgtatc 67
|||||||||||| |||||||| |||||||| |||| ||| |||||||||||||
Sbjct: 131 tacttcctccgttccaaaattcttgtcttagatttgcctagatacggatgtatc 78
>RF00906;MIR1122;FJ374610.1/683-817 4568:Triticum monococcum
Length = 135
Score = 103 bits (52), Expect = 7e-22
Identities = 84/95 (88%)
Strand = Plus / Plus
Query: 24 gtcccaaaatttttgtcttaaatttatctatatacggatgtatcanctcacattttagta 83
||||||||||| |||||||| |||| |||| ||| |||||||||| ||||| ||||||||
Sbjct: 15 gtcccaaaattcttgtcttagatttttctaaatagggatgtatcaactcacgttttagta 74
Query: 84 ttagatacatctatatctatataaatataagacaa 118
||||||||||| ||||||| | |||| ||||||||
Sbjct: 75 ttagatacatccatatctagacaaatctaagacaa 109
Score = 60.0 bits (30), Expect = 9e-09
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 14 tacttcctccgtcccaaaatttttgtcttaaatttatctatatacggatgtatc 67
|||| |||||||||||||||| |||||||| |||| |||| ||| |||||||||
Sbjct: 131 tactccctccgtcccaaaattcttgtcttagatttgtctagatatggatgtatc 78
>RF00906;MIR1122;AY485644.1/84291-84425 4568:Triticum monococcum
Length = 135
Score = 87.7 bits (44), Expect = 4e-17
Identities = 91/107 (85%)
Strand = Plus / Plus
Query: 12 tgtacttcctccgtcccaaaatttttgtcttaaatttatctatatacggatgtatcanct 71
|||||| |||||||||||||||| ||||||||||||| |||| ||| |||||||| |
Sbjct: 3 tgtactccctccgtcccaaaattgttgtcttaaatttgtctaaatatggatgtatgtagt 62
Query: 72 cacattttagtattagatacatctatatctatataaatataagacaa 118
|||||||||| ||||||||||| |||||| | |||| ||||||||
Sbjct: 63 tacattttagtgttagatacatccgtatctaaacaaatgtaagacaa 109
Score = 50.1 bits (25), Expect = 9e-06
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 19 cctccgtcccaaaatttttgtcttaaatttatctatatacggatgtatc 67
||||| |||||||||| |||||||| |||| | || |||||||||||||
Sbjct: 126 cctccatcccaaaattcttgtcttacatttgtttagatacggatgtatc 78
>RF00906;MIR1122;EU660895.1/53244-53110 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 83.8 bits (42), Expect = 6e-16
Identities = 89/105 (84%)
Strand = Plus / Minus
Query: 14 tacttcctccgtcccaaaatttttgtcttaaatttatctatatacggatgtatcanctca 73
|||| ||||| |||||||||| |||||||| |||| |||| |||||||||||| | |||
Sbjct: 131 tactccctccatcccaaaattcttgtcttagatttgtctaaatacggatgtatgaagtca 72
Query: 74 cattttagtattagatacatctatatctatataaatataagacaa 118
|||||||||||| |||||| | |||||| | |||| ||||||||
Sbjct: 71 tattttagtattaaatacatatgtatctagacaaatgtaagacaa 27
>RF00906;MIR1122;AF427791.1/222786-222921 4513:Hordeum vulgare
Length = 136
Score = 67.9 bits (34), Expect = 4e-11
Identities = 109/133 (81%), Gaps = 1/133 (0%)
Strand = Plus / Plus
Query: 13 gtacttcctccgtcccaaaatttttgtcttaaatttatctatatacggatgtatcanctc 72
||||| |||||||||||||||| |||||||| |||| | || ||| | ||||||| ||
Sbjct: 4 gtactccctccgtcccaaaattattgtcttagatttgtttagatatgaatgtatctagtc 63
Query: 73 acattttagt-attagatacatctatatctatataaatataagacaaattttttgggagg 131
| ||||||| ||||||||||||||| |||| | ||| |||||||| |||||||| |
Sbjct: 64 aagttttagtaattagatacatctatttctaaacaaagttaagacaagaattttgggacg 123
Query: 132 aaggaagtattat 144
|||| ||||||||
Sbjct: 124 aagggagtattat 136
>RF00906;MIR1122;AY853252.1/217307-217173 4513:Hordeum vulgare
Length = 135
Score = 65.9 bits (33), Expect = 1e-10
Identities = 80/96 (83%)
Strand = Plus / Plus
Query: 14 tacttcctccgtcccaaaatttttgtcttaaatttatctatatacggatgtatcanctca 73
|||| ||||| || ||||||| | ||||||||||| |||| ||| ||||||||| |||
Sbjct: 5 tactccctccatctcaaaattctggtcttaaatttctctaaatatggatgtatctagtca 64
Query: 74 cattttagtattagatacatctatatctatataaat 109
| ||||||| ||||||||||| |||||| ||||||
Sbjct: 65 cgttttagtgttagatacatccgtatctagataaat 100
Score = 60.0 bits (30), Expect = 9e-09
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 14 tacttcctccgtcccaaaatttttgtcttaaatttatctatatacggatgtatc 67
|||| |||||||||||||||| |||||| ||||||||| |||||||||||||
Sbjct: 131 tactacctccgtcccaaaattcttgtctaggatttatctagatacggatgtatc 78
>RF00906;MIR1122;EU660901.1/93085-92951 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 63.9 bits (32), Expect = 6e-10
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 20 ctccgtcccaaaatttttgtcttaaatttatctatatacggatgtatcanctcacatttt 79
|||||||| ||||| ||||||||||||| |||| | ||| |||||||| |||| ||||
Sbjct: 11 ctccgtcctgaaattcttgtcttaaatttgtctaaagacgaatgtatcaagtcacgtttt 70
Query: 80 agtattagatacatc 94
||||||||||||||
Sbjct: 71 tgtattagatacatc 85
Score = 46.1 bits (23), Expect = 1e-04
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 13 gtacttcctccgtcccaaaatttttgtcttaaatttatctatatacggatgtatc 67
||||| |||||||||||||||| |||| || ||| |||| |||||||||||||
Sbjct: 132 gtactccctccgtcccaaaattcttgttgtagctttgtctagatacggatgtatc 78
>RF00906;MIR1122;AF277239.1/1056-1190 37679:Heteranthelium piliferum
Length = 135
Score = 63.9 bits (32), Expect = 6e-10
Identities = 85/103 (82%)
Strand = Plus / Plus
Query: 14 tacttcctccgtcccaaaatttttgtcttaaatttatctatatacggatgtatcanctca 73
|||| |||||||||||||||| ||||| || |||| |||| ||||||||||||| |||
Sbjct: 5 tactccctccgtcccaaaattcttgtcatagatttgtctaaatacggatgtatctagtca 64
Query: 74 cattttagtattagatacatctatatctatataaatataagac 116
||||||| ||||| |||| ||||||| | |||| ||||||
Sbjct: 65 tgttttagtgttagacacattcatatctaaacaaatctaagac 107
>RF00906;MIR1122;AF254799.1/46723-46588 4513:Hordeum vulgare
Length = 136
Score = 61.9 bits (31), Expect = 2e-09
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 21 tccgtcccaaaatttttgtcttaaatttatctatatacggatgtatc 67
|||||||||||||| ||||||||||||| |||||||| | |||||||
Sbjct: 12 tccgtcccaaaattcttgtcttaaatttgtctatatatgaatgtatc 58
>RF00906;MIR1122;AJ704455.1/466-601 4513:Hordeum vulgare
Length = 136
Score = 61.9 bits (31), Expect = 2e-09
Identities = 76/90 (84%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 14 tacttcctccgtcccaaaatttttgtcttaaatttatctatatacggatgtatcanctca 73
|||| |||||||||||||||| |||||||| |||| |||| ||| | ||||||| |||
Sbjct: 5 tactccctccgtcccaaaattcttgtcttacatttgtctagatatgaatgtatctagtca 64
Query: 74 cattttagta-ttagatacatctatatcta 102
| |||||||| || ||||||||||| ||||
Sbjct: 65 cgttttagtattttgatacatctatttcta 94
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 11 atgtacttcctccgtcccaaaatttttgtcttaa 44
||||||| |||||||||||||||| |||||||||
Sbjct: 135 atgtactccctccgtcccaaaattcttgtcttaa 102
>RF00906;MIR1122;EU862588.1/607-710 4516:Hordeum bulbosum
Length = 104
Score = 58.0 bits (29), Expect = 4e-08
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 19 cctccgtcccaaaatttttgtcttaaatttatctatatacggatgtatc 67
|||||||||||||| |||||||| ||||||||| |||||||||||||
Sbjct: 95 cctccgtcccaaaaagcttgtcttagatttatctagatacggatgtatc 47
Score = 50.1 bits (25), Expect = 9e-06
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 77 tttagtattagatacatctatatctatataaatataagacaaattttttggga 129
|||||| ||||||||||| |||||| |||||| |||||||| |||||||||
Sbjct: 37 tttagtgttagatacatccgtatctagataaatctaagacaagctttttggga 89
>RF00906;MIR1122;EU626553.1/30213-30109 4572:Triticum urartu
Length = 105
Score = 56.0 bits (28), Expect = 1e-07
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 14 tacttcctccgtcccaaaatttttgtcttaaatttatctatatacgga 61
|||| |||||||||||||||| |||||||| |||||| || |||||||
Sbjct: 101 tactccctccgtcccaaaattcttgtcttagatttatttagatacgga 54
>RF00906;MIR1122;AY887089.1/1801-1936 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 136
Score = 50.1 bits (25), Expect = 9e-06
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 14 tacttcctccgtcccaaaatttttgtcttaaatttatctatatacggatgtatcanctca 73
|||| |||||||| ||||||| |||| || ||||| |||| ||| ||||||||| | |
Sbjct: 5 tactccctccgtctcaaaattattgttttgaatttgtctagatatggatgtatctagtta 64
Query: 74 cattttagtatt 85
||||||||||||
Sbjct: 65 cattttagtatt 76
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 14 tacttcctccgtcccaaaatttttgtctta 43
|||| |||||||||||||||| ||||||||
Sbjct: 132 tactccctccgtcccaaaattcttgtctta 103
>RF00906;MIR1122;DQ123819.1/2832-2966 4571:Triticum turgidum
Length = 135
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 36 ttgtcttaaatttatctatatacggatgtatc 67
||||||||||||| |||| |||||||||||||
Sbjct: 27 ttgtcttaaatttgtctagatacggatgtatc 58
>RF00906;MIR1122;AY943294.1/62260-62364 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 10 tatgtacttcctccgtcccaaaat 33
||||||||||||||||||||||||
Sbjct: 105 tatgtacttcctccgtcccaaaat 82
>RF00906;MIR1122;EU096089.1/14944-15085 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 142
Score = 48.1 bits (24), Expect = 3e-05
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 14 tacttcctccgtcccaaaatttttgtcttaaatttatctatatacggatgta 65
|||| |||||||||||||||| |||||||| ||| |||||| | |||||||
Sbjct: 138 tactccctccgtcccaaaattcttgtcttaggtttgtctataaatggatgta 87
>RF00906;MIR1122;DQ145528.1/676-542 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 135
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 20 ctccgtcccaaaatttttgtcttaaatt 47
||||||||||||||| ||||||||||||
Sbjct: 125 ctccgtcccaaaattcttgtcttaaatt 98
>RF00906;MIR1122;AC097446.3/172120-171989 39947:Oryza sativa
Japonica Group
Length = 132
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 13 gtacttcctccgtcccaaaatttt 36
||||||||||||||||||||||||
Sbjct: 129 gtacttcctccgtcccaaaatttt 106
>RF00906;MIR1122;AP008209.1/34516197-34516103 39947:Oryza sativa
Japonica Group
Length = 95
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 atgtacttcctccgtcccaaaat 33
|||||||||||||||||||||||
Sbjct: 2 atgtacttcctccgtcccaaaat 24
>RF00906;MIR1122;EU862571.1/695-592 98113:Hordeum murinum subsp.
glaucum
Length = 104
Score = 44.1 bits (22), Expect = 5e-04
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 14 tacttcctccgtcccaaaatttttgtcttaaatttatctatatacggatgtatc 67
|||| ||||||||||| || |||||| | ||||||||| |||||||||||||
Sbjct: 5 tactacctccgtcccagaaagcttgtctaagatttatctagatacggatgtatc 58
