miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;D30809.1/4836-4921 4565:Triticum aestivum (bread
wheat)
Length = 86
Score = 79.8 bits (40), Expect = 6e-15
Identities = 52/56 (92%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataagtgtcactaatttagtacaaagttgtactaaatc 67
||||||| ||||| ||||||||||||| || |||||||||||||||||||||||||
Sbjct: 82 tactcccaccgtcccaaaataagtgtcgctgatttagtacaaagttgtactaaatc 27
Score = 63.9 bits (32), Expect = 4e-10
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 43 atttagtacaaagttgtactaaatcaacgacacttattttggga 86
||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 28 atttagtacaactttgtactaaatcagcgacacttattttggga 71
>RF00906;MIR1122;AF525764.1/1593-1489 200361:Aegilops tauschii
subsp. strangulata
Length = 105
Score = 69.9 bits (35), Expect = 6e-12
Identities = 48/51 (94%), Gaps = 1/51 (1%)
Strand = Plus / Plus
Query: 47 agtacaaagttgtactaaatcaacgacacttattttgggat-gagggagta 96
||||||||||||||||||| ||| ||||||||||||||||| |||||||||
Sbjct: 51 agtacaaagttgtactaaagcaaagacacttattttgggatggagggagta 101
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 53 aagttgtactaaatcaacgacacttattttggga 86
||||||||||||||||| |||| |||||||||||
Sbjct: 49 aagttgtactaaatcaaagacaattattttggga 16
>RF00906;MIR1122;FJ491378.1/3751-3855 4550:Secale cereale (rye)
Length = 105
Score = 61.9 bits (31), Expect = 2e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 15 tccctccgtctcaaaataagtgtcactaatttagtacaaagtt 57
|||||||||| |||||||||||||| | |||||||||||||||
Sbjct: 8 tccctccgtcccaaaataagtgtcattgatttagtacaaagtt 50
Score = 60.0 bits (30), Expect = 6e-09
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 45 ttagtacaaagttgtactaaatcaacgacacttattttggga 86
|||||| ||||||||| ||||||| |||||||||||||||||
Sbjct: 49 ttagtataaagttgtattaaatcagcgacacttattttggga 90
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 56 ttgtactaaatcaacgacacttattttggga 86
|||||||||||||| ||||||||||||||||
Sbjct: 46 ttgtactaaatcaatgacacttattttggga 16
Score = 44.1 bits (22), Expect = 4e-04
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataagtgtcactaatttagtacaa 53
||||||| ||||| ||||||||||||| || ||||| |||||
Sbjct: 101 tactcccgccgtcccaaaataagtgtcgctgatttaatacaa 60
>RF00906;MIR1122;AK249769.1/2180-2285 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 106
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataagtgtcactaatttagta 50
|||||||||||||| |||||||||||||| |||||||||
Sbjct: 5 tactccctccgtcttaaaataagtgtcacaaatttagta 43
>RF00906;MIR1122;AY137517.1/5819-5912 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 94
Score = 60.0 bits (30), Expect = 6e-09
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 11 gtactccctccgtctcaaaataagtgtcactaatttagtacaaagttgtactaaatcaac 70
|||||||||||| |||||||||||||| |||||| |||| |||||||||| | ||
Sbjct: 91 gtactccctccgatccaaaataagtgtcatggttttagttcaaatttgtactaaaaccac 32
Query: 71 gacacttattttgg 84
||||||||||||||
Sbjct: 31 gacacttattttgg 18
>RF00906;MIR1122;EU282251.1/1314-1209 52152:Elymus repens
Length = 106
Score = 60.0 bits (30), Expect = 6e-09
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataagtgtcactaatttagtacaaagtt 57
||||||||||||| ||||||||||||| | |||||||||| |||||
Sbjct: 5 tactccctccgtcccaaaataagtgtcgcaaatttagtactaagtt 50
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataagtgtc 38
||||||||||||| |||||||||||||
Sbjct: 102 tactccctccgtcccaaaataagtgtc 76
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 60.0 bits (30), Expect = 6e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 9 atgtactccctccgtctcaaaataagtgtc 38
||||||||||||||||||||||||||||||
Sbjct: 2 atgtactccctccgtctcaaaataagtgtc 31
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 11 gtactccctccgtctcaaaataagtgtc 38
|||||||||||||| |||||||||||||
Sbjct: 102 gtactccctccgtcccaaaataagtgtc 75
>RF00906;MIR1122;EF560592.1/17009-17118 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 110
Score = 58.0 bits (29), Expect = 2e-08
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataagtgtcactaatttagtacaaagt 56
|||| |||||||| ||||||||||||| || ||||||||||||||
Sbjct: 106 tactacctccgtcccaaaataagtgtcgctgatttagtacaaagt 62
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 56 ttgtactaaatcaacgacacttattttggga 86
||||||||||||| |||||||||||||||||
Sbjct: 65 ttgtactaaatcagcgacacttattttggga 95
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 59 tactaaatcaacgacacttattttgg 84
|||||||||| |||||||||||||||
Sbjct: 43 tactaaatcagcgacacttattttgg 18
>RF00906;MIR1122;AK252095.1/1820-1925 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 106
Score = 58.0 bits (29), Expect = 2e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 10 tgtactccctccgtctcaaaataagtgtcactaatttagta 50
|||||||||||||| |||||||||||||| || ||||||||
Sbjct: 3 tgtactccctccgtatcaaaataagtgtcgctgatttagta 43
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataagtgtcactaattta 47
||||||||| ||| ||||||||||||||| ||||||
Sbjct: 102 tactccctctgtcccaaaataagtgtcacaaattta 67
Score = 44.1 bits (22), Expect = 4e-04
Identities = 41/46 (89%), Gaps = 1/46 (2%)
Strand = Plus / Minus
Query: 39 actaatttagtacaaagttg-tactaaatcaacgacacttattttg 83
||||| |||||||||| || |||||||||| ||||||||||||||
Sbjct: 64 actaaattagtacaaattttatactaaatcagcgacacttattttg 19
>RF00906;MIR1122;AJ234485.1/114-218 4513:Hordeum vulgare
Length = 105
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 11 gtactccctccgtctcaaaataagtgtc 38
||||||||||||||||||||||||||||
Sbjct: 4 gtactccctccgtctcaaaataagtgtc 31
>RF00906;MIR1122;AB183299.1/312-404 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 54.0 bits (27), Expect = 4e-07
Identities = 64/75 (85%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataagtgtcactaatttagtacaaagttgtactaaatcaacg 71
|||| |||||||| ||||||||||||| | || ||||||||||||| ||||||| |
Sbjct: 89 tacttcctccgtcccaaaataagtgtctc-aacttagtacaaagttatactaaagttgag 31
Query: 72 acacttattttggga 86
|||||||||||||||
Sbjct: 30 acacttattttggga 16
Score = 50.1 bits (25), Expect = 6e-06
Identities = 62/73 (84%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 14 ctccctccgtctcaaaataagtgtcactaatttagtacaaagttgtactaaatcaacgac 73
||||||||||| ||||||||||||| | | ||||||| || ||||||||| | | |||
Sbjct: 7 ctccctccgtcccaaaataagtgtctcaactttagtataactttgtactaagttga-gac 65
Query: 74 acttattttggga 86
|||||||||||||
Sbjct: 66 acttattttggga 78
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 52.0 bits (26), Expect = 1e-06
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataagtgtcactaatttagtacaaagttgtactaaa 65
||||||||||||| ||||||||||||| | | ||||||||| ||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtctcaagcttagtacaaccttgtactaaa 58
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 52.0 bits (26), Expect = 1e-06
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataagtgtcactaatttagtacaaagttgtactaaa 65
||||||||||||| ||||||||||||| | | ||||||||| ||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtctcaagcttagtacaactttgtactaaa 58
>RF00906;MIR1122;AC148487.14/40672-40806 3880:Medicago truncatula
(barrel medic)
Length = 135
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 8 tatgtactccctccgtctcaaaata 32
|||||||||||||||||||||||||
Sbjct: 1 tatgtactccctccgtctcaaaata 25
>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum (bread
wheat)
Length = 105
Score = 48.1 bits (24), Expect = 2e-05
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataagtgtcactaatttagtacaaagttgtacta 63
||||||||||||| ||||||||||||| | | ||||||||| ||||||||
Sbjct: 101 tactccctccgtcccaaaataagtgtctcaaccttagtacaactttgtacta 50
>RF00906;MIR1122;AJ234583.1/157-260 4513:Hordeum vulgare
Length = 104
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataagt 35
||||||||||||||||||||||||
Sbjct: 5 tactccctccgtctcaaaataagt 28
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 11 gtactccctccgtctcaaaataagtgtc 38
||||||||||||||||||||||| ||||
Sbjct: 101 gtactccctccgtctcaaaataattgtc 74
>RF00906;MIR1122;EU282768.1/632-528 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataagt 35
||||||||||||||||||||||||
Sbjct: 101 tactccctccgtctcaaaataagt 78
>RF00906;MIR1122;EU282771.1/632-528 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataagt 35
||||||||||||||||||||||||
Sbjct: 101 tactccctccgtctcaaaataagt 78
>RF00906;MIR1122;FJ581044.1/175385-175266 4538:Oryza glaberrima
(African rice)
Length = 120
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataagt 35
||||||||||||||||||||||||
Sbjct: 116 tactccctccgtctcaaaataagt 93
>RF00906;MIR1122;AAAA02026943.1/18413-18317 39946:Oryza sativa
Indica Group
Length = 97
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 10 tgtactccctccgtctcaaaataa 33
||||||||||||||||||||||||
Sbjct: 95 tgtactccctccgtctcaaaataa 72
>RF01058;MIR806;AAAA02021561.1/35714-35484 39946:Oryza sativa
Indica Group
Length = 231
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataag 34
|||||||||||||||||||||||
Sbjct: 2 tactccctccgtctcaaaataag 24
>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum
(bread wheat)
Length = 104
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataagtgtc 38
||||||||||||| |||||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtc 31
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataagtgtc 38
||||||||||||| |||||||||||||
Sbjct: 100 tactccctccgtcccaaaataagtgtc 74
>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
subsp. dicoccoides
Length = 105
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataagtgtc 38
||||||||||||| |||||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtc 31
>RF00906;MIR1122;AJ249141.1/1014-910 4513:Hordeum vulgare
Length = 105
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataagtgtc 38
|||||||||||||||||||||| ||||
Sbjct: 101 tactccctccgtctcaaaataactgtc 75
>RF00906;MIR1122;DQ900687.1/24296-24401 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 106
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 56 ttgtactaaatcaacgacacttatttt 82
|||||||| ||||||||||||||||||
Sbjct: 61 ttgtactagatcaacgacacttatttt 87
>RF00906;MIR1122;EU282656.1/645-750 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 106
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 8 tatgtactccctccgtctcaaaataagtgtc 38
||||||||||||| ||| |||||||||||||
Sbjct: 106 tatgtactccctcggtcccaaaataagtgtc 76
>RF00906;MIR1122;EU282770.1/593-711 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 119
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataagtgtc 38
||||||||||||||||||||| |||||
Sbjct: 5 tactccctccgtctcaaaataggtgtc 31
>RF00906;MIR1122;DQ995510.1/1615-1718 4513:Hordeum vulgare
Length = 104
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataagtgtc 38
|||||||||||||||||||||| ||||
Sbjct: 5 tactccctccgtctcaaaataactgtc 31
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataagtgtc 38
||||||||||||| |||||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtc 31
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataagtgtc 38
||||||||||||| |||||||||||||
Sbjct: 101 tactccctccgtcccaaaataagtgtc 75
>RF00906;MIR1122;AK250735.1/291-376 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 86
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataagtgtc 38
||||||||||||| |||||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtc 31
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataagtgtc 38
||||||||||||| |||||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtc 31
>RF01058;MIR806;AACV01004692.1/2655-2900 39947:Oryza sativa
Japonica Group
Length = 246
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 gtactccctccgtctcaaaataagtg 36
|||||||||||||| |||||||||||
Sbjct: 1 gtactccctccgtcccaaaataagtg 26
>RF01058;MIR806;AL731615.4/103346-103100 39947:Oryza sativa
Japonica Group
Length = 247
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataagtgt 37
||||||||||||| ||||||||||||
Sbjct: 2 tactccctccgtcccaaaataagtgt 27
>RF00906;MIR1122;AJ507395.1/7785-7899 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 115
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 11 gtactccctccgtctcaaaataagtg 36
|||||||||||||| |||||||||||
Sbjct: 112 gtactccctccgtcccaaaataagtg 87
>RF00906;MIR1122;AF474373.1/50497-50394 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 104
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 71 gacacttattttgggatgagggagta 96
|||||||||||||||| |||||||||
Sbjct: 75 gacacttattttgggaggagggagta 100
>RF00906;MIR1122;AK249560.1/988-1092 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 10 tgtactccctccgtctcaaaataagtgtcactaatttagtacaaagttgtacta 63
||||||||||||||| |||||||| |||| | || ||| ||||| ||||||||
Sbjct: 103 tgtactccctccgtcccaaaataactgtctcaaacttaatacaagtttgtacta 50
>RF00906;MIR1122;AY133251.1/901-1005 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 9 atgtactccctccgtctcaaaataagtgtc 38
|||||||||||||||| |||||||| ||||
Sbjct: 104 atgtactccctccgtcccaaaataactgtc 75
>RF00906;MIR1122;AF181455.1/3108-2994 4513:Hordeum vulgare
Length = 115
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 11 gtactccctccgtctcaaaataagtg 36
|||||||||||||| |||||||||||
Sbjct: 112 gtactccctccgtcccaaaataagtg 87
>RF00906;MIR1122;AAAA02022195.1/27114-27226 39946:Oryza sativa
Indica Group
Length = 113
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataa 33
||||||||||||||||||||||
Sbjct: 5 tactccctccgtctcaaaataa 26
>RF00906;MIR1122;AAAA02028034.1/27580-27414 39946:Oryza sativa
Indica Group
Length = 167
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 gtactccctccgtctcaaaata 32
||||||||||||||||||||||
Sbjct: 4 gtactccctccgtctcaaaata 25
