miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;AC152551.33/14978-14893 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 73.8 bits (37), Expect = 5e-13
Identities = 76/88 (86%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 22 gtgacagaagagagtgagcacccatggtcttttcctgcatatatcattttatgctcgaag 81
||||||||||||||||||||| |||||| |||| || ||| ||| || |||||||
Sbjct: 1 gtgacagaagagagtgagcacacatggtactttcgtg--tatgatgtttcattctcgaag 58
Query: 82 ctatgtgtgctcactctctatctgtcac 109
||||||||||||||||||||||||||||
Sbjct: 59 ctatgtgtgctcactctctatctgtcac 86
>RF00073;mir-156;EU548405.1/118-209 3702:Arabidopsis thaliana (thale
cress)
Length = 92
Score = 67.9 bits (34), Expect = 3e-11
Identities = 79/92 (85%), Gaps = 4/92 (4%)
Strand = Plus / Plus
Query: 22 gtgacagaagagagtgagcacccatggtct-tttcctgcatatatca---ttttatgctc 77
||||||||||||||||||||| |||||| |||| ||||||| | | ||| |||||
Sbjct: 1 gtgacagaagagagtgagcacacatggtggctttcttgcatatttgaaggtttcatgctt 60
Query: 78 gaagctatgtgtgctcactctctatctgtcac 109
|||||||||||||||||||||||||| |||||
Sbjct: 61 gaagctatgtgtgctcactctctatccgtcac 92
>RF00073;mir-156;AASG02007740.1/7202-7285 3988:Ricinus communis
(castor bean)
Length = 84
Score = 61.9 bits (31), Expect = 2e-09
Identities = 74/88 (84%), Gaps = 4/88 (4%)
Strand = Plus / Plus
Query: 22 gtgacagaagagagtgagcacccatggtcttttcctgcatatatcattttatgctcgaag 81
||||||||||||||||||||| |||||| |||||||| || | || ||||||||||
Sbjct: 1 gtgacagaagagagtgagcacacatggtactttcctgc----atgaattcatgctcgaag 56
Query: 82 ctatgtgtgctcactctctatctgtcac 109
| || ||||| ||||||||||||||||
Sbjct: 57 ccttgcgtgcttactctctatctgtcac 84
>RF00073;mir-156;AM455203.2/879-962 29760:Vitis vinifera
Length = 84
Score = 60.0 bits (30), Expect = 8e-09
Identities = 73/87 (83%), Gaps = 4/87 (4%)
Strand = Plus / Plus
Query: 22 gtgacagaagagagtgagcacccatggtcttttcctgcatatatcattttatgctcgaag 81
||||||||||||||||||||| |||||||| ||| ||||| || ||||| ||||
Sbjct: 1 gtgacagaagagagtgagcacacatggtctgttcttgcatgggtc----catgcttgaag 56
Query: 82 ctatgtgtgctcactctctatctgtca 108
|| || |||||||||||||||||||||
Sbjct: 57 ctctgcgtgctcactctctatctgtca 83
>RF00073;mir-156;AP009602.1/6441-6354 4081:Solanum lycopersicum
Length = 88
Score = 58.0 bits (29), Expect = 3e-08
Identities = 76/89 (85%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 22 gtgacagaagagagtgagcacccatggtcttttcctgcatatatcattttatgctcgaag 81
||||||||||||||||||||| ||||||||||| |||| || || ||||| ||||
Sbjct: 1 gtgacagaagagagtgagcacatatggtcttttcaagcat-gatgtttacatgcttgaag 59
Query: 82 ctatgtgtgctcac-tctctatctgtcac 109
||||| |||||||| ||||||||||||||
Sbjct: 60 ctatgcgtgctcacttctctatctgtcac 88
>RF00073;mir-156;AP009602.1/17046-16952 4081:Solanum lycopersicum
Length = 95
Score = 54.0 bits (27), Expect = 5e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 71 tatgctcgaagctatgtgtgctcactctctatctgtcac 109
|||||| ||| ||||||||||| ||||||||||||||||
Sbjct: 57 tatgcttgaaactatgtgtgcttactctctatctgtcac 95
>RF00073;mir-156;ABIM01007853.1/18159-18072 3649:Carica papaya
(papaya)
Length = 88
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 23 tgacagaagagagtgagcacccatgg 48
||||||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacccatgg 27
>RF00073;mir-156;EU548379.1/158-255 3702:Arabidopsis thaliana (thale
cress)
Length = 98
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 72 atgctcgaagctatgtgtgctcactctctatctgtcac 109
||||| ||||||||||||||| ||||||| ||||||||
Sbjct: 61 atgcttgaagctatgtgtgcttactctctctctgtcac 98
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 22 gtgacagaagagagtgagcacccatggt 49
||||||||||||||||||||| ||||||
Sbjct: 1 gtgacagaagagagtgagcacacatggt 28
>RF00073;mir-156;AP009515.1/86721-86633 4081:Solanum lycopersicum
Length = 89
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 22 gtgacagaagagagtgagcacccatggtcttttc 55
||||||||||||||||||||| |||||| |||||
Sbjct: 1 gtgacagaagagagtgagcacacatggtgttttc 34
>RF00073;mir-156;AP010362.1/32796-32877 34305:Lotus japonicus
Length = 82
Score = 50.1 bits (25), Expect = 7e-06
Identities = 72/88 (81%), Gaps = 6/88 (6%)
Strand = Plus / Plus
Query: 22 gtgacagaagagagtgagcacccatggtcttttcctgcatatatcattttatgctcgaag 81
||||||||||||||||||||| |||||| |||| |||| ||| ||||| ||||
Sbjct: 1 gtgacagaagagagtgagcacacatggtgctttcttgca------gtttcatgcttgaag 54
Query: 82 ctatgtgtgctcactctctatctgtcac 109
||| ||||||||| |||||||||||||
Sbjct: 55 ttatatgtgctcaccctctatctgtcac 82
>RF00073;mir-156;AASG02002418.1/21340-21254 3988:Ricinus communis
(castor bean)
Length = 87
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 22 gtgacagaagagagtgagcacccatggt 49
||||||||||||||||||||| ||||||
Sbjct: 1 gtgacagaagagagtgagcacacatggt 28
>RF00073;mir-156;AB108111.1/202-100 15957:Phleum pratense (timothy
grass)
Length = 103
Score = 48.1 bits (24), Expect = 3e-05
Identities = 37/40 (92%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 23 tgacagaagagagtgagcacccatggt-cttttcctgcat 61
|||||||||||||||||||| |||||| |||||| |||||
Sbjct: 2 tgacagaagagagtgagcacacatggtgcttttcttgcat 41
Score = 44.1 bits (22), Expect = 5e-04
Identities = 35/38 (92%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 72 atgctcgaagctatgtgtgctcac-tctctatctgtca 108
||||| |||||||||||||||||| ||||| |||||||
Sbjct: 65 atgcttgaagctatgtgtgctcacttctctctctgtca 102
>RF00073;mir-156;EU004241.2/110-202 4529:Oryza rufipogon
Length = 93
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 23 tgacagaagagagtgagcacccatggt 49
|||||||||||||||||||| ||||||
Sbjct: 2 tgacagaagagagtgagcacacatggt 28
Score = 44.1 bits (22), Expect = 5e-04
Identities = 35/38 (92%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 72 atgctcgaagctatgtgtgctcac-tctctatctgtca 108
||||| |||||||||||||||||| ||||| |||||||
Sbjct: 55 atgcttgaagctatgtgtgctcacttctctctctgtca 92
>RF00073;mir-156;AARH01003139.1/114039-113955 3694:Populus
trichocarpa
Length = 85
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 88 gtgctcactctctatctgtcac 109
||||||||||||||||||||||
Sbjct: 64 gtgctcactctctatctgtcac 85
