miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;AASG02001090.1/34048-34133 3988:Ricinus communis
(castor bean)
Length = 86
Score = 50.1 bits (25), Expect = 7e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 20 gtgtgcctggctccttgtatgccacttgcaaagttcatcag 60
|||||||||||||| ||||||||| ||| |||||||||||
Sbjct: 1 gtgtgcctggctccctgtatgccatttgtgaagttcatcag 41
>RF00247;mir-160;CAAP02000723.1/67959-67874 29760:Vitis vinifera
Length = 86
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 23 tgcctggctccttgtatgccacttgcaaagt 53
||||||||||| ||||||||| |||||||||
Sbjct: 4 tgcctggctccctgtatgccatttgcaaagt 34
>RF00247;mir-160;AC196190.2/61996-61908 4081:Solanum lycopersicum
Length = 89
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 23 tgcctggctccttgtatgccacttgcaaag 52
||||||||||| ||||||||| ||||||||
Sbjct: 4 tgcctggctccctgtatgccatttgcaaag 33
>RF00247;mir-160;ABEU01014597.1/43590-43504 145481:Physcomitrella
patens subsp. patens
Length = 87
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 23 tgcctggctccttgtatgccacttgc 48
||||||||||| ||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccacttgc 29
