miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00690;MIR408;AARH01001232.1/22611-22493 3694:Populus trichocarpa
Length = 119
Score = 83.8 bits (42), Expect = 4e-16
Identities = 73/82 (89%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 14 gggaacaggcagagcatggatgcagctattaacagaaactctctgttttggcttcactca 73
|||||||||||||||||||||| ||||| |||||||| || |||||||||| || ||
Sbjct: 22 gggaacaggcagagcatggatggagctactaacagaagtact-tgttttggctctaccca 80
Query: 74 tgcactgcctcttccctggctt 95
||||||||||||||||||||||
Sbjct: 81 tgcactgcctcttccctggctt 102
>RF00690;MIR408;AASG02001473.1/22877-22996 3988:Ricinus communis
(castor bean)
Length = 120
Score = 83.8 bits (42), Expect = 4e-16
Identities = 78/90 (86%)
Strand = Plus / Plus
Query: 7 aaaggctgggaacaggcagagcatggatgcagctattaacagaaactctctgttttggct 66
|||| |||||||||||||| ||||||||| |||| ||||||||| ||||||||||||
Sbjct: 15 aaagactgggaacaggcagtgcatggatggggctactaacagaaaacatctgttttggct 74
Query: 67 tcactcatgcactgcctcttccctggcttc 96
|| | |||||||||||||||||||||||
Sbjct: 75 ctacccctgcactgcctcttccctggcttc 104
>RF00690;MIR408;AC136840.24/84429-84307 3880:Medicago truncatula
(barrel medic)
Length = 123
Score = 63.9 bits (32), Expect = 4e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 56 ctgttttggcttcactcatgcactgcctcttccctggctt 95
||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 67 ctgttgtggctccactcatgcactgcctcttccctggctt 106
>RF00690;MIR408;AC235367.1/71602-71757 3847:Glycine max (soybean)
Length = 156
Score = 56.0 bits (28), Expect = 9e-08
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 55 tctgttttggcttcactcatgcactgcctcttccctggct 94
|||||| ||||| | |||||||||||||||||||||||||
Sbjct: 100 tctgttgtggctacgctcatgcactgcctcttccctggct 139
Score = 50.1 bits (25), Expect = 5e-06
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 7 aaaggctgggaacaggcagagcatggatgcagctattaacagaaa 51
||||||||||||||||||| ||| | ||| |||||| ||||||||
Sbjct: 16 aaaggctgggaacaggcagggcacgaatggagctatcaacagaaa 60
>RF00690;MIR408;BABK01104206.1/188-52 34305:Lotus japonicus
Length = 137
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 69 actcatgcactgcctcttccctggc 93
|||||||||||||||||||||||||
Sbjct: 94 actcatgcactgcctcttccctggc 118
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 14 gggaacaggcagagcatggatgcagctattaaca 47
||||| |||||||||||||||| |||||| ||||
Sbjct: 23 gggaagaggcagagcatggatggagctatcaaca 56
>RF00690;MIR408;ABIM01026620.1/11572-11449 3649:Carica papaya
(papaya)
Length = 124
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 9 aggctgggaacaggcagagcatggatg 35
|||||||||| ||||||||||||||||
Sbjct: 18 aggctgggaagaggcagagcatggatg 44
>RF00690;MIR408;AF419552.1/68-193 3702:Arabidopsis thaliana (thale
cress)
Length = 126
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 72 catgcactgcctcttccctggct 94
|||||||||||||||||||||||
Sbjct: 86 catgcactgcctcttccctggct 108
>RF00690;MIR408;AM434998.2/53932-53808 29760:Vitis vinifera
Length = 125
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 72 catgcactgcctcttccctggct 94
|||||||||||||||||||||||
Sbjct: 86 catgcactgcctcttccctggct 108
