miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF446141.1/45135-45243 37682:Aegilops tauschii
Length = 109
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 9 atcatactccctccgtcccaaaaagtt 35
||||||||||||||||||| |||||||
Sbjct: 1 atcatactccctccgtccctaaaagtt 27
>RF00906;MIR1122;AACV01022102.1/8073-7952 39947:Oryza sativa
Japonica Group
Length = 122
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tcatactccctccgtcccaaaaa 32
|||||||||||||||||||||||
Sbjct: 2 tcatactccctccgtcccaaaaa 24
>RF00906;MIR1122;AAAA02030464.1/12601-12722 39946:Oryza sativa
Indica Group
Length = 122
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tcatactccctccgtcccaaaaa 32
|||||||||||||||||||||||
Sbjct: 2 tcatactccctccgtcccaaaaa 24
>RF00906;MIR1122;AAAA02022032.1/23143-22996 39946:Oryza sativa
Indica Group
Length = 148
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 10 tcatactccctccgtcccaaaaa 32
|||||||||||||||||||||||
Sbjct: 147 tcatactccctccgtcccaaaaa 125
>RF01058;MIR806;ABXC01001640.1/20344-20113 4558:Sorghum bicolor
(sorghum)
Length = 232
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 atactccctccgtcccaaaaag 33
||||||||||||||||||||||
Sbjct: 1 atactccctccgtcccaaaaag 22
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 12 atactccctccgtcccaaaaag 33
||||||||||||||||||||||
Sbjct: 232 atactccctccgtcccaaaaag 211
>RF00906;MIR1122;AF521177.1/27342-27466 4513:Hordeum vulgare
Length = 125
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 10 tcatactccctccgtcccaaaa 31
||||||||||||||||||||||
Sbjct: 124 tcatactccctccgtcccaaaa 103
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 tcatactccctccgtcccaaaa 31
||||||||||||||||||||||
Sbjct: 2 tcatactccctccgtcccaaaa 23
>RF00906;MIR1122;AAAA02035140.1/47005-46870 39946:Oryza sativa
Indica Group
Length = 136
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 catactccctccgtcccaaaaa 32
||||||||||||||||||||||
Sbjct: 3 catactccctccgtcccaaaaa 24
>RF00906;MIR1122;ABRL01001045.1/1775-1911 65489:Oryza barthii
Length = 137
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 catactccctccgtcccaaaaa 32
||||||||||||||||||||||
Sbjct: 3 catactccctccgtcccaaaaa 24
>RF00906;MIR1122;AAAA02008343.1/9662-9526 39946:Oryza sativa
Indica Group
Length = 137
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 catactccctccgtcccaaaaa 32
||||||||||||||||||||||
Sbjct: 3 catactccctccgtcccaaaaa 24
>RF00906;MIR1122;AAAA02022585.1/6052-5955 39946:Oryza sativa
Indica Group
Length = 98
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 11 catactccctccgtcccaaaaa 32
||||||||||||||||||||||
Sbjct: 96 catactccctccgtcccaaaaa 75
>RF00906;MIR1122;AAAA02004642.1/60119-60040 39946:Oryza sativa
Indica Group
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 catactccctccgtcccaaaaa 32
||||||||||||||||||||||
Sbjct: 3 catactccctccgtcccaaaaa 24
>RF00906;MIR1122;AAAA02032841.1/5550-5441 39946:Oryza sativa
Indica Group
Length = 110
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 atactccctccgtcccaaaaag 33
||||||||||||||||||||||
Sbjct: 4 atactccctccgtcccaaaaag 25
>RF00906;MIR1122;AC109595.2/23288-23368 39947:Oryza sativa
Japonica Group
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 11 catactccctccgtcccaaaaa 32
||||||||||||||||||||||
Sbjct: 79 catactccctccgtcccaaaaa 58
>RF00906;MIR1122;AP004259.2/7530-7458 39947:Oryza sativa Japonica
Group
Length = 73
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 12 atactccctccgtcccaaaaag 33
||||||||||||||||||||||
Sbjct: 70 atactccctccgtcccaaaaag 49
>RF00906;MIR1122;AAAA02028278.1/9457-9588 39946:Oryza sativa
Indica Group
Length = 132
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 catactccctccgtcccaaaaa 32
||||||||||||||||||||||
Sbjct: 3 catactccctccgtcccaaaaa 24
>RF00906;MIR1122;AAAA02017224.1/4701-4826 39946:Oryza sativa
Indica Group
Length = 126
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 catactccctccgtcccaaaaa 32
||||||||||||||||||||||
Sbjct: 3 catactccctccgtcccaaaaa 24
>RF00906;MIR1122;AP008218.1/1449043-1448953 39947:Oryza sativa
Japonica Group
Length = 91
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 catactccctccgtcccaaaaa 32
||||||||||||||||||||||
Sbjct: 3 catactccctccgtcccaaaaa 24
>RF00906;MIR1122;AP003412.4/28754-28834 39947:Oryza sativa
Japonica Group
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 catactccctccgtcccaaaaa 32
||||||||||||||||||||||
Sbjct: 3 catactccctccgtcccaaaaa 24
