miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AB183299.1/312-404 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 55 tactaaagttgagacccttgttttgggacggag 87
||||||||||||||| ||| |||||||||||||
Sbjct: 43 tactaaagttgagacacttattttgggacggag 11
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 60 aagttgagacccttgttttgggacggagtaagtata 95
|||||||||| ||| ||||||||||||| |||||||
Sbjct: 56 aagttgagacacttattttgggacggaggaagtata 91
>RF00906;MIR1122;AAAA02022585.1/6052-5955 39946:Oryza sativa
Indica Group
Length = 98
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 8 aacatactccctccgtcccaaaaa 31
||||||||||||||||||||||||
Sbjct: 98 aacatactccctccgtcccaaaaa 75
>RF00906;MIR1122;AAAA02004642.1/60119-60040 39946:Oryza sativa
Indica Group
Length = 80
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 aacatactccctccgtcccaaaaa 31
||||||||||||||||||||||||
Sbjct: 1 aacatactccctccgtcccaaaaa 24
>RF00906;MIR1122;AP003412.4/28754-28834 39947:Oryza sativa
Japonica Group
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 aacatactccctccgtcccaaaaa 31
||||||||||||||||||||||||
Sbjct: 1 aacatactccctccgtcccaaaaa 24
>RF00906;MIR1122;AAAA02035140.1/47005-46870 39946:Oryza sativa
Indica Group
Length = 136
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 acatactccctccgtcccaaaaa 31
|||||||||||||||||||||||
Sbjct: 2 acatactccctccgtcccaaaaa 24
>RF00906;MIR1122;ABRL01001045.1/1775-1911 65489:Oryza barthii
Length = 137
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 acatactccctccgtcccaaaaa 31
|||||||||||||||||||||||
Sbjct: 2 acatactccctccgtcccaaaaa 24
>RF00906;MIR1122;AAAA02008343.1/9662-9526 39946:Oryza sativa
Indica Group
Length = 137
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 acatactccctccgtcccaaaaa 31
|||||||||||||||||||||||
Sbjct: 2 acatactccctccgtcccaaaaa 24
>RF00906;MIR1122;AAAA02018379.1/19319-19440 39946:Oryza sativa
Indica Group
Length = 122
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 8 aacatactccctccgtcccaaaa 30
|||||||||||||||||||||||
Sbjct: 122 aacatactccctccgtcccaaaa 100
>RF00906;MIR1122;AC109595.2/23288-23368 39947:Oryza sativa
Japonica Group
Length = 81
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 9 acatactccctccgtcccaaaaa 31
|||||||||||||||||||||||
Sbjct: 80 acatactccctccgtcccaaaaa 58
>RF00906;MIR1122;AP008218.1/1449043-1448953 39947:Oryza sativa
Japonica Group
Length = 91
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 acatactccctccgtcccaaaaa 31
|||||||||||||||||||||||
Sbjct: 2 acatactccctccgtcccaaaaa 24
>RF00906;MIR1122;CR954190.2/110040-110176 3880:Medicago truncatula
(barrel medic)
Length = 137
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 acatactccctccgtcccaaaa 30
||||||||||||||||||||||
Sbjct: 2 acatactccctccgtcccaaaa 23
>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum
(bread wheat)
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 54 gtactaaagttgagacccttgttttgggacggag 87
||||||| |||||||| ||| |||||||||||||
Sbjct: 62 gtactaaggttgagacacttattttgggacggag 95
>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum
(bread wheat)
Length = 104
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 54 gtactaaagttgagacccttgttttgggacggag 87
||||||| |||||||| ||| |||||||||||||
Sbjct: 44 gtactaaggttgagacacttattttgggacggag 11
>RF00906;MIR1122;AACV01022102.1/8073-7952 39947:Oryza sativa
Japonica Group
Length = 122
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 catactccctccgtcccaaaaa 31
||||||||||||||||||||||
Sbjct: 3 catactccctccgtcccaaaaa 24
>RF00906;MIR1122;AAAA02028442.1/1248-1113 39946:Oryza sativa
Indica Group
Length = 136
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 acatactccctccgtcccaaaa 30
||||||||||||||||||||||
Sbjct: 2 acatactccctccgtcccaaaa 23
>RF00906;MIR1122;AP008214.1/14410723-14410632 39947:Oryza sativa
Japonica Group
Length = 92
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 acatactccctccgtcccaaaa 30
||||||||||||||||||||||
Sbjct: 2 acatactccctccgtcccaaaa 23
>RF00906;MIR1122;AAAA02030464.1/12601-12722 39946:Oryza sativa
Indica Group
Length = 122
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 catactccctccgtcccaaaaa 31
||||||||||||||||||||||
Sbjct: 3 catactccctccgtcccaaaaa 24
>RF00906;MIR1122;AACV01020861.1/25006-25108 39947:Oryza sativa
Japonica Group
Length = 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 acatactccctccgtcccaaaa 30
||||||||||||||||||||||
Sbjct: 2 acatactccctccgtcccaaaa 23
>RF00906;MIR1122;AP003303.4/77673-77577 39947:Oryza sativa
Japonica Group
Length = 97
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 acatactccctccgtcccaaaa 30
||||||||||||||||||||||
Sbjct: 2 acatactccctccgtcccaaaa 23
>RF00906;MIR1122;AC128646.5/47101-47248 39947:Oryza sativa
Japonica Group
Length = 148
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 acatactccctccgtcccaaaa 30
||||||||||||||||||||||
Sbjct: 2 acatactccctccgtcccaaaa 23
>RF00906;MIR1122;AAAA02022032.1/23143-22996 39946:Oryza sativa
Indica Group
Length = 148
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 10 catactccctccgtcccaaaaa 31
||||||||||||||||||||||
Sbjct: 146 catactccctccgtcccaaaaa 125
>RF00906;MIR1122;AP005421.3/127890-127779 39947:Oryza sativa
Japonica Group
Length = 112
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 acatactccctccgtcccaaaa 30
||||||||||||||||||||||
Sbjct: 2 acatactccctccgtcccaaaa 23
>RF00906;MIR1122;AAAA02028278.1/9457-9588 39946:Oryza sativa
Indica Group
Length = 132
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 catactccctccgtcccaaaaa 31
||||||||||||||||||||||
Sbjct: 3 catactccctccgtcccaaaaa 24
>RF00906;MIR1122;AP005802.3/90428-90511 39947:Oryza sativa
Japonica Group
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 9 acatactccctccgtcccaaaa 30
||||||||||||||||||||||
Sbjct: 83 acatactccctccgtcccaaaa 62
>RF00906;MIR1122;AAAA02017224.1/4701-4826 39946:Oryza sativa
Indica Group
Length = 126
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 catactccctccgtcccaaaaa 31
||||||||||||||||||||||
Sbjct: 3 catactccctccgtcccaaaaa 24
>RF00906;MIR1122;AP008215.1/18970521-18970611 39947:Oryza sativa
Japonica Group
Length = 91
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 acatactccctccgtcccaaaa 30
||||||||||||||||||||||
Sbjct: 2 acatactccctccgtcccaaaa 23
