miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY821733.1/621-487 4568:Triticum monococcum
Length = 135
Score = 198 bits (100), Expect = 2e-50
Identities = 121/128 (94%)
Strand = Plus / Plus
Query: 13 tactccctccgtccccaaattcttgtcttagatttgtctaaatacggatgtatcaagtca 72
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tactccctccgtcccaaaattcttgtcttagatttgtctaaatacggatgtatcaagtca 64
Query: 73 tgttttagtattagacacatccgtatctagacgaatctaagacaagaattttgggacgga 132
|||||||||||||| |||||||||||||| | ||||||||||||||||||||| |||||
Sbjct: 65 cgttttagtattagatacatccgtatctaggcaaatctaagacaagaattttggaacgga 124
Query: 133 gggagtat 140
|| |||||
Sbjct: 125 ggaagtat 132
Score = 85.7 bits (43), Expect = 2e-16
Identities = 49/51 (96%)
Strand = Plus / Minus
Query: 89 acatccgtatctagacgaatctaagacaagaattttgggacggagggagta 139
|||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 55 acatccgtatttagacaaatctaagacaagaattttgggacggagggagta 5
>RF00906;MIR1122;AF277239.1/1056-1190 37679:Heteranthelium piliferum
Length = 135
Score = 186 bits (94), Expect = 6e-47
Identities = 120/129 (93%)
Strand = Plus / Plus
Query: 12 atactccctccgtccccaaattcttgtcttagatttgtctaaatacggatgtatcaagtc 71
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 4 atactccctccgtcccaaaattcttgtcatagatttgtctaaatacggatgtatctagtc 63
Query: 72 atgttttagtattagacacatccgtatctagacgaatctaagacaagaattttgggacgg 131
|||||||||| |||||||||| | |||||| || |||||||||| |||||||||||||||
Sbjct: 64 atgttttagtgttagacacattcatatctaaacaaatctaagacnagaattttgggacgg 123
Query: 132 agggagtat 140
|||||||||
Sbjct: 124 agggagtat 132
Score = 81.8 bits (41), Expect = 2e-15
Identities = 53/57 (92%)
Strand = Plus / Minus
Query: 84 tagacacatccgtatctagacgaatctaagacaagaattttgggacggagggagtat 140
|||| |||||||||| ||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 60 tagatacatccgtatttagacaaatctatgacaagaattttgggacggagggagtat 4
>RF00906;MIR1122;FJ374610.1/683-817 4568:Triticum monococcum
Length = 135
Score = 180 bits (91), Expect = 4e-45
Identities = 121/131 (92%)
Strand = Plus / Plus
Query: 10 acatactccctccgtccccaaattcttgtcttagatttgtctaaatacggatgtatcaag 69
||||||||| || ||||| ||||||||||||||||||| |||||||| |||||||||||
Sbjct: 2 acatactccttctgtcccaaaattcttgtcttagatttttctaaatagggatgtatcaac 61
Query: 70 tcatgttttagtattagacacatccgtatctagacgaatctaagacaagaattttgggac 129
||| |||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 62 tcacgttttagtattagatacatccatatctagacaaatctaagacaagaattttgggac 121
Query: 130 ggagggagtat 140
|||||||||||
Sbjct: 122 ggagggagtat 132
Score = 85.7 bits (43), Expect = 2e-16
Identities = 52/55 (94%)
Strand = Plus / Minus
Query: 12 atactccctccgtccccaaattcttgtcttagatttgtctaaatacggatgtatc 66
|||||||||||||||| |||||||||||||||||||||||| ||| |||||||||
Sbjct: 132 atactccctccgtcccaaaattcttgtcttagatttgtctagatatggatgtatc 78
>RF00906;MIR1122;EU660895.1/53244-53110 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 167 bits (84), Expect = 5e-41
Identities = 117/128 (91%)
Strand = Plus / Minus
Query: 13 tactccctccgtccccaaattcttgtcttagatttgtctaaatacggatgtatcaagtca 72
|||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 131 tactccctccatcccaaaattcttgtcttagatttgtctaaatacggatgtatgaagtca 72
Query: 73 tgttttagtattagacacatccgtatctagacgaatctaagacaagaattttgggacgga 132
| ||||||||||| | |||| |||||||||| ||| |||||||||||||||| ||||||
Sbjct: 71 tattttagtattaaatacatatgtatctagacaaatgtaagacaagaattttgagacgga 12
Query: 133 gggagtat 140
||||||||
Sbjct: 11 gggagtat 4
Score = 77.8 bits (39), Expect = 4e-14
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 89 acatccgtatctagacgaatctaagacaagaattttgggacggagggagta 139
|||||||||| ||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 81 acatccgtatttagacaaatctaagacaagaattttgggatggagggagta 131
>RF00906;MIR1122;AM932686.1/57613-57747 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 165 bits (83), Expect = 2e-40
Identities = 116/127 (91%)
Strand = Plus / Plus
Query: 13 tactccctccgtccccaaattcttgtcttagatttgtctaaatacggatgtatcaagtca 72
||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 5 tactccctcggtcccaaaattcttgtcttagatttgtctagatacggatgtatcaagtca 64
Query: 73 tgttttagtattagacacatccgtatctagacgaatctaagacaagaattttgggacgga 132
|||| |||||||| ||||| |||||||||| ||||||||||||||| |||||||| ||
Sbjct: 65 cattttcgtattagatacatctgtatctagacaaatctaagacaagaaatttgggacaga 124
Query: 133 gggagta 139
|||||||
Sbjct: 125 gggagta 131
Score = 85.7 bits (43), Expect = 2e-16
Identities = 49/51 (96%)
Strand = Plus / Minus
Query: 89 acatccgtatctagacgaatctaagacaagaattttgggacggagggagta 139
|||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 55 acatccgtatctagacaaatctaagacaagaattttgggaccgagggagta 5
>RF00906;MIR1122;EU660901.1/93085-92951 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 149 bits (75), Expect = 1e-35
Identities = 114/127 (89%)
Strand = Plus / Plus
Query: 13 tactccctccgtccccaaattcttgtcttagatttgtctaaatacggatgtatcaagtca 72
||||| |||||||| |||||||||||||| ||||||||||| ||| |||||||||||||
Sbjct: 5 tactcgctccgtcctgaaattcttgtcttaaatttgtctaaagacgaatgtatcaagtca 64
Query: 73 tgttttagtattagacacatccgtatctagacgaatctaagacaagaattttgggacgga 132
||||| |||||||| |||||||||||||||| || ||| |||||||||||||||||||
Sbjct: 65 cgtttttgtattagatacatccgtatctagacaaagctacaacaagaattttgggacgga 124
Query: 133 gggagta 139
|||||||
Sbjct: 125 gggagta 131
Score = 67.9 bits (34), Expect = 4e-11
Identities = 49/54 (90%)
Strand = Plus / Minus
Query: 13 tactccctccgtccccaaattcttgtcttagatttgtctaaatacggatgtatc 66
||||||||||||||| |||||||||| ||| |||||||| |||||||||||||
Sbjct: 131 tactccctccgtcccaaaattcttgttgtagctttgtctagatacggatgtatc 78
>RF00906;MIR1122;DQ145528.1/676-542 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 135
Score = 131 bits (66), Expect = 3e-30
Identities = 107/118 (90%), Gaps = 2/118 (1%)
Strand = Plus / Plus
Query: 23 gtccccaaattcttgtcttagatttgtctaaatacggatgtatcaagtcatgttttagta 82
||||| |||||||||||||||||||||||||||| | ||||||| |||||||||||||||
Sbjct: 15 gtcccaaaattcttgtcttagatttgtctaaatatgaatgtatctagtcatgttttagta 74
Query: 83 -ttagacacatccgtatctagacgaatctaagacaagaattttgggacggagggagta 139
||||| |||||| | ||||||| ||| |||||||||||||||||||||||| |||||
Sbjct: 75 tttagatacatccatttctagac-aatttaagacaagaattttgggacggagagagta 131
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 100 tagacgaatctaagacaagaattttgggac 129
||||| ||||||||||||||||||||||||
Sbjct: 44 tagacaaatctaagacaagaattttgggac 15
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 13 tactccctccgtccccaaattcttgtctta 42
||||| ||||||||| ||||||||||||||
Sbjct: 131 tactctctccgtcccaaaattcttgtctta 102
>RF00906;MIR1122;EF540321.1/52965-52831 4571:Triticum turgidum
Length = 135
Score = 127 bits (64), Expect = 5e-29
Identities = 106/120 (88%)
Strand = Plus / Minus
Query: 17 ccctccgtccccaaattcttgtcttagatttgtctaaatacggatgtatcaagtcatgtt 76
||||||||||| |||||||||||||| ||||||||||||||||||||||| ||| | ||
Sbjct: 127 ccctccgtcccaaaattcttgtcttaaatttgtctaaatacggatgtatctagttacatt 68
Query: 77 ttagtattagacacatccgtatctagacgaatctaagacaagaattttgggacggaggga 136
||||| ||||| ||||| |||||| || ||| ||||||||||||||||||| |||||||
Sbjct: 67 ttagtgttagatacatctttatctaaacaaatgtaagacaagaattttgggatggaggga 8
Score = 71.9 bits (36), Expect = 2e-12
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 84 tagacacatccgtatctagacgaatctaagacaagaattttgggacggaggg 135
|||| |||||||||| ||||| ||| ||||||||||||||||||||||||||
Sbjct: 76 tagatacatccgtatttagacaaatttaagacaagaattttgggacggaggg 127
>RF00906;MIR1122;AY485644.1/84291-84425 4568:Triticum monococcum
Length = 135
Score = 127 bits (64), Expect = 5e-29
Identities = 109/124 (87%)
Strand = Plus / Plus
Query: 13 tactccctccgtccccaaattcttgtcttagatttgtctaaatacggatgtatcaagtca 72
||||||||||||||| ||||| |||||||| ||||||||||||| |||||||| ||| |
Sbjct: 5 tactccctccgtcccaaaattgttgtcttaaatttgtctaaatatggatgtatgtagtta 64
Query: 73 tgttttagtattagacacatccgtatctagacgaatctaagacaagaattttgggacgga 132
||||||| ||||| ||||||||||||| || ||| ||||||||||||||||||| |||
Sbjct: 65 cattttagtgttagatacatccgtatctaaacaaatgtaagacaagaattttgggatgga 124
Query: 133 ggga 136
||||
Sbjct: 125 ggga 128
Score = 61.9 bits (31), Expect = 2e-09
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 89 acatccgtatctagacgaatctaagacaagaattttgggacggagggagta 139
|||||| ||| ||||| ||| |||||||| |||||||||||||||||||||
Sbjct: 55 acatccatatttagacaaatttaagacaacaattttgggacggagggagta 5
Score = 61.9 bits (31), Expect = 2e-09
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 16 tccctccgtccccaaattcttgtcttagatttgtctaaatacggatgtatc 66
||||||| |||| |||||||||||||| |||||| || |||||||||||||
Sbjct: 128 tccctccatcccaaaattcttgtcttacatttgtttagatacggatgtatc 78
>RF00906;MIR1122;AY853252.1/217307-217173 4513:Hordeum vulgare
Length = 135
Score = 127 bits (64), Expect = 5e-29
Identities = 112/128 (87%)
Strand = Plus / Plus
Query: 12 atactccctccgtccccaaattcttgtcttagatttgtctaaatacggatgtatcaagtc 71
||||||||||| || | ||||||| |||||| |||| |||||||| ||||||||| ||||
Sbjct: 4 atactccctccatctcaaaattctggtcttaaatttctctaaatatggatgtatctagtc 63
Query: 72 atgttttagtattagacacatccgtatctagacgaatctaagacaagaattttgggacgg 131
| |||||||| ||||| ||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 64 acgttttagtgttagatacatccgtatctagataaatcctagacaagaattttgggacgg 123
Query: 132 agggagta 139
||| ||||
Sbjct: 124 aggtagta 131
Score = 60.0 bits (30), Expect = 9e-09
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 13 tactccctccgtccccaaattcttgtcttagatttgtctaaatacggatgtatc 66
|||| |||||||||| |||||||||||| ||||| |||| |||||||||||||
Sbjct: 131 tactacctccgtcccaaaattcttgtctaggatttatctagatacggatgtatc 78
>RF00906;MIR1122;DQ890018.1/183-48 77009:Hordeum vulgare subsp.
spontaneum
Length = 136
Score = 115 bits (58), Expect = 2e-25
Identities = 113/130 (86%), Gaps = 1/130 (0%)
Strand = Plus / Plus
Query: 12 atactccctccgtccccaaattcttgtcttagatttgtctaaatacggatgtatcaagtc 71
||||||||||||| || ||||||||||||||||||||| || ||| | ||||||| |||
Sbjct: 4 atactccctccgttccaaaattcttgtcttagatttgtttagatatgaatgtatctagtt 63
Query: 72 atgttttagta-ttagacacatccgtatctagacgaatctaagacaagaattttgggacg 130
| ||||||||| ||||| ||||| | ||||||| || |||||||||||||||| |||||
Sbjct: 64 aagttttagtatttagatacatcaatttctagacaaagctaagacaagaattttaggacg 123
Query: 131 gagggagtat 140
||||||||||
Sbjct: 124 gagggagtat 133
Score = 65.9 bits (33), Expect = 1e-10
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 96 tatctagacgaatctaagacaagaattttgggacggagggagtat 140
|||||| || ||||||||||||||||||||| |||||||||||||
Sbjct: 48 tatctaaacaaatctaagacaagaattttggaacggagggagtat 4
Score = 58.0 bits (29), Expect = 4e-08
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 12 atactccctccgtccccaaattcttgtcttagatttgtcta 52
||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 133 atactccctccgtcctaaaattcttgtcttagctttgtcta 93
>RF00906;MIR1122;AF254799.1/46723-46588 4513:Hordeum vulgare
Length = 136
Score = 113 bits (57), Expect = 7e-25
Identities = 112/129 (86%), Gaps = 1/129 (0%)
Strand = Plus / Plus
Query: 13 tactccctccgtccccaaattcttgtcttagatttgtctaaatacggatgtatcaagtca 72
|||||| |||||||| |||||||||||||| ||||||||| ||| | ||||||| |||||
Sbjct: 5 tactccttccgtcccaaaattcttgtcttaaatttgtctatatatgaatgtatctagtca 64
Query: 73 tgttttagta-ttagacacatccgtatctagacgaatctaagacaagaattttgggacgg 131
|| ||||||| ||||| |||||| | | ||||| | |||||||||||||||||| ||||
Sbjct: 65 tggtttagtatttagatacatccatgtgtagacaatgctaagacaagaattttggaacgg 124
Query: 132 agggagtat 140
|||||||||
Sbjct: 125 agggagtat 133
Score = 56.0 bits (28), Expect = 1e-07
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 100 tagacgaatctaagacaagaattttgggacggagggagta 139
||||| ||| ||||||||||||||||||||||| ||||||
Sbjct: 44 tagacaaatttaagacaagaattttgggacggaaggagta 5
Score = 54.0 bits (27), Expect = 6e-07
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 12 atactccctccgtccccaaattcttgtcttagatttgtctaaatacggatgtatc 66
||||||||||||| || ||||||||||||||| ||||||| | | |||||||||
Sbjct: 133 atactccctccgttccaaaattcttgtcttagcattgtctacacatggatgtatc 79
>RF00906;MIR1122;AJ704455.1/466-601 4513:Hordeum vulgare
Length = 136
Score = 111 bits (56), Expect = 3e-24
Identities = 111/128 (86%), Gaps = 1/128 (0%)
Strand = Plus / Plus
Query: 13 tactccctccgtccccaaattcttgtcttagatttgtctaaatacggatgtatcaagtca 72
||||||||||||||| |||||||||||||| ||||||||| ||| | ||||||| |||||
Sbjct: 5 tactccctccgtcccaaaattcttgtcttacatttgtctagatatgaatgtatctagtca 64
Query: 73 tgttttagta-ttagacacatccgtatctagacgaatctaagacaagaattttgggacgg 131
||||||||| || || ||||| | |||| || || ||||||||||||||||||||||
Sbjct: 65 cgttttagtattttgatacatctatttctaaacaaacttaagacaagaattttgggacgg 124
Query: 132 agggagta 139
||||||||
Sbjct: 125 agggagta 132
Score = 71.9 bits (36), Expect = 2e-12
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 96 tatctagacgaatctaagacaagaattttgggacggagggagta 139
||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 48 tatctagacaaatgtaagacaagaattttgggacggagggagta 5
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 13 tactccctccgtccccaaattcttgtctta 42
||||||||||||||| ||||||||||||||
Sbjct: 132 tactccctccgtcccaaaattcttgtctta 103
>RF00906;MIR1122;DQ890004.1/48-183 4513:Hordeum vulgare
Length = 136
Score = 107 bits (54), Expect = 4e-23
Identities = 112/130 (86%), Gaps = 1/130 (0%)
Strand = Plus / Minus
Query: 12 atactccctccgtccccaaattcttgtcttagatttgtctaaatacggatgtatcaagtc 71
||||| ||||||| || ||||||||||||||||||||| || ||| | ||||||| |||
Sbjct: 133 atactacctccgttccaaaattcttgtcttagatttgtttagatatgaatgtatctagtt 74
Query: 72 atgttttagta-ttagacacatccgtatctagacgaatctaagacaagaattttgggacg 130
| ||||||||| ||||| ||||| | ||||||| || |||||||||||||||| |||||
Sbjct: 73 aagttttagtatttagatacatcaatttctagacaaagctaagacaagaattttaggacg 14
Query: 131 gagggagtat 140
||||||||||
Sbjct: 13 gagggagtat 4
Score = 58.0 bits (29), Expect = 4e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 12 atactccctccgtccccaaattcttgtcttagatttgtcta 52
||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 4 atactccctccgtcctaaaattcttgtcttagctttgtcta 44
Score = 58.0 bits (29), Expect = 4e-08
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 96 tatctagacgaatctaagacaagaattttgggacggagggagtat 140
|||||| || ||||||||||||||||||||| ||||||| |||||
Sbjct: 89 tatctaaacaaatctaagacaagaattttggaacggaggtagtat 133
>RF00906;MIR1122;AF427791.1/222786-222921 4513:Hordeum vulgare
Length = 136
Score = 105 bits (53), Expect = 2e-22
Identities = 111/129 (86%), Gaps = 1/129 (0%)
Strand = Plus / Plus
Query: 13 tactccctccgtccccaaattcttgtcttagatttgtctaaatacggatgtatcaagtca 72
||||||||||||||| ||||| ||||||||||||||| || ||| | ||||||| |||||
Sbjct: 5 tactccctccgtcccaaaattattgtcttagatttgtttagatatgaatgtatctagtca 64
Query: 73 tgttttagt-attagacacatccgtatctagacgaatctaagacaagaattttgggacgg 131
|||||||| |||||| ||||| | |||| || || |||||||||||||||||||||
Sbjct: 65 agttttagtaattagatacatctatttctaaacaaagttaagacaagaattttgggacga 124
Query: 132 agggagtat 140
|||||||||
Sbjct: 125 agggagtat 133
Score = 63.9 bits (32), Expect = 6e-10
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 96 tatctagacgaatctaagacaagaattttgggacggagggagta 139
|||||| || |||||||||||| |||||||||||||||||||||
Sbjct: 48 tatctaaacaaatctaagacaataattttgggacggagggagta 5
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 12 atactccctccgtccccaaattcttgtctta 42
||||||||| |||||| ||||||||||||||
Sbjct: 133 atactcccttcgtcccaaaattcttgtctta 103
>RF00906;MIR1122;EU096089.1/14944-15085 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 142
Score = 89.7 bits (45), Expect = 1e-17
Identities = 114/136 (83%), Gaps = 7/136 (5%)
Strand = Plus / Plus
Query: 12 atactccctccgtccccaaattcttgtcttagatttgtctaaatacggatgtatcaagtc 71
|||||||||||||||| || ||||||||||||||||||||| ||| | |||||| ||||
Sbjct: 4 atactccctccgtcccaaacttcttgtcttagatttgtctagatatgaatgtatgtagtc 63
Query: 72 atgttttagta-ttaga------cacatccgtatctagacgaatctaagacaagaatttt 124
| ||||| ||| ||||| |||||| | | ||||| || ||||||||||||||||
Sbjct: 64 acgttttggtatttagatacacctacatccatttatagacaaacctaagacaagaatttt 123
Query: 125 gggacggagggagtat 140
||||||||||||||||
Sbjct: 124 gggacggagggagtat 139
Score = 73.8 bits (37), Expect = 6e-13
Identities = 43/45 (95%)
Strand = Plus / Minus
Query: 96 tatctagacgaatctaagacaagaattttgggacggagggagtat 140
||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 48 tatctagacaaatctaagacaagaagtttgggacggagggagtat 4
Score = 65.9 bits (33), Expect = 1e-10
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 12 atactccctccgtccccaaattcttgtcttagatttgtcta 52
|||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 139 atactccctccgtcccaaaattcttgtcttaggtttgtcta 99
>RF00906;MIR1122;AY853252.1/33762-33628 4513:Hordeum vulgare
Length = 135
Score = 87.7 bits (44), Expect = 4e-17
Identities = 112/132 (84%), Gaps = 2/132 (1%)
Strand = Plus / Plus
Query: 13 tactccctccgtccccaaattcttgtcttagatttgtctaaatacggatgtatcaagtca 72
||||||||||||| | ||||||||| |||| |||||| || ||||| ||||||| |||||
Sbjct: 5 tactccctccgtctcaaaattcttgccttatatttgtttagatacgaatgtatctagtca 64
Query: 73 tgttttagtatt-agacacatccgtatctagacgaatctaagacaagaattttgggacgg 131
||| |||||| ||| |||||| ||||||| || |||||||||||||||||| | ||
Sbjct: 65 aattt-agtatttagatacatccagttctagacaaagctaagacaagaattttggaatgg 123
Query: 132 agggagtatcat 143
||||||||||||
Sbjct: 124 agggagtatcat 135
Score = 56.0 bits (28), Expect = 1e-07
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 84 tagacacatccgtatctagacgaatctaagacaagaattttgggacggagggagta 139
|||| |||| |||||||| || ||| |||| ||||||||||| |||||||||||||
Sbjct: 60 tagatacattcgtatctaaacaaatataaggcaagaattttgagacggagggagta 5
Score = 50.1 bits (25), Expect = 9e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 12 atactccctccgtccccaaattcttgtcttagatttgtcta 52
||||||||||| | || ||||||||||||||| ||||||||
Sbjct: 132 atactccctccattccaaaattcttgtcttagctttgtcta 92
>RF00906;MIR1122;AF459639.1/191055-190921 4568:Triticum monococcum
Length = 135
Score = 85.7 bits (43), Expect = 2e-16
Identities = 106/127 (83%)
Strand = Plus / Minus
Query: 13 tactccctccgtccccaaattcttgtcttagatttgtctaaatacggatgtatcaagtca 72
|||||||||||| || || | |||||||| |||||||||| ||||||||||||| || |
Sbjct: 131 tactccctccgttccaaattacttgtcttggatttgtctagatacggatgtatctagact 72
Query: 73 tgttttagtattagacacatccgtatctagacgaatctaagacaagaattttgggacgga 132
||||||| |||| | ||||||||||||| ||||||||||||| | || || |||||
Sbjct: 71 cattttagtgctagatatctccgtatctagacaaatctaagacaagtaattcggaacgga 12
Query: 133 gggagta 139
|||||||
Sbjct: 11 gggagta 5
Score = 63.9 bits (32), Expect = 6e-10
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 84 tagacacatccgtatctagacgaatctaagacaagaattttgggacggagggagta 139
|||| |||||||||||||||| |||| |||||||| | ||||| ||||||||||||
Sbjct: 76 tagatacatccgtatctagacaaatccaagacaagtaatttggaacggagggagta 131
Score = 56.0 bits (28), Expect = 1e-07
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 13 tactccctccgtccccaaattcttgtcttagatttgtctaaatacgga 60
|||||||||||| || || | ||||||||||||||||||| |||||||
Sbjct: 5 tactccctccgttccgaattacttgtcttagatttgtctagatacgga 52
>RF00906;MIR1122;DQ123819.1/2832-2966 4571:Triticum turgidum
Length = 135
Score = 85.7 bits (43), Expect = 2e-16
Identities = 106/127 (83%)
Strand = Plus / Plus
Query: 13 tactccctccgtccccaaattcttgtcttagatttgtctaaatacggatgtatcaagtca 72
|||||||||||| | || | ||||||||| ||||||||| ||||||||||||| || |
Sbjct: 5 tactccctccgttctgaattacttgtcttaaatttgtctagatacggatgtatctagact 64
Query: 73 tgttttagtattagacacatccgtatctagacgaatctaagacaagaattttgggacgga 132
||||||| |||||| ||| |||||||||| |||| |||||||| | ||||| |||||
Sbjct: 65 cattttagtgctagacatatctgtatctagacaaatcgaagacaagtaatttggaacgga 124
Query: 133 gggagta 139
|||||||
Sbjct: 125 gggagta 131
Score = 48.1 bits (24), Expect = 3e-05
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 84 tagacacatccgtatctagacgaatctaagacaagaattttgggacggagggagta 139
|||| |||||||||||||||| ||| ||||||||| | || | ||||||||||||
Sbjct: 60 tagatacatccgtatctagacaaatttaagacaagtaattcagaacggagggagta 5
>RF00906;MIR1122;AY887089.1/1801-1936 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 136
Score = 83.8 bits (42), Expect = 6e-16
Identities = 109/130 (83%), Gaps = 1/130 (0%)
Strand = Plus / Plus
Query: 13 tactccctccgtccccaaattcttgtcttagatttgtctaaatacggatgtatcaagtca 72
||||||||||||| | ||||| |||| || ||||||||| ||| ||||||||| ||| |
Sbjct: 5 tactccctccgtctcaaaattattgttttgaatttgtctagatatggatgtatctagtta 64
Query: 73 tgttttagtatt-agacacatccgtatctagacgaatctaagacaagaattttgggacgg 131
|||||||||| | | ||||| |||||| | |||||||||||||||||||||||||
Sbjct: 65 cattttagtatttaaatgcatccatatctaaaaacatctaagacaagaattttgggacgg 124
Query: 132 agggagtatc 141
||||||||||
Sbjct: 125 agggagtatc 134
Score = 60.0 bits (30), Expect = 9e-09
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 12 atactccctccgtccccaaattcttgtcttagat 45
|||||||||||||||| |||||||||||||||||
Sbjct: 133 atactccctccgtcccaaaattcttgtcttagat 100
Score = 48.1 bits (24), Expect = 3e-05
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 84 tagacacatccgtatctagacgaatctaagacaagaattttgggacggagggagta 139
|||| |||||| ||||||||| ||| || |||| ||||||| |||||||||||||
Sbjct: 60 tagatacatccatatctagacaaattcaaaacaataattttgagacggagggagta 5
>RF00906;MIR1122;DJ023121.1/176-54 4513:Hordeum vulgare
Length = 123
Score = 75.8 bits (38), Expect = 2e-13
Identities = 44/46 (95%)
Strand = Plus / Minus
Query: 96 tatctagacgaatctaagacaagaattttgggacggagggagtatc 141
||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 48 tatctagacaaatctaagacaagaattttaggacggagggagtatc 3
Score = 65.9 bits (33), Expect = 1e-10
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 12 atactccctccgtccccaaattcttgtcttagatttgtcta 52
||||||||||||||| ||||||||||||||||||||||||
Sbjct: 4 atactccctccgtcctaaaattcttgtcttagatttgtcta 44
>RF00906;MIR1122;EU626553.1/30213-30109 4572:Triticum urartu
Length = 105
Score = 71.9 bits (36), Expect = 2e-12
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 92 tccgtatctagacgaatctaagacaagaattttgggacggagggagta 139
|||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 54 tccgtatctaaataaatctaagacaagaattttgggacggagggagta 101
Score = 63.9 bits (32), Expect = 6e-10
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 13 tactccctccgtccccaaattcttgtcttagatttgtctaaatacgga 60
||||||||||||||| ||||||||||||||||||| | || |||||||
Sbjct: 101 tactccctccgtcccaaaattcttgtcttagatttatttagatacgga 54
Score = 60.0 bits (30), Expect = 9e-09
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 89 acatccgtatctagacgaatctaagacaagaattttgg 126
||||||||||||||| |||||||||||||||||||||
Sbjct: 54 acatccgtatctagataaatctaagacaagaattttgg 17
Score = 54.0 bits (27), Expect = 6e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 29 aaattcttgtcttagatttgtctaaatacggatgt 63
||||||||||||||||||| |||| ||||||||||
Sbjct: 20 aaattcttgtcttagatttatctagatacggatgt 54
>RF00906;MIR1122;EU862588.1/607-710 4516:Hordeum bulbosum
Length = 104
Score = 69.9 bits (35), Expect = 9e-12
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 76 tttagtattagacacatccgtatctagacgaatctaagacaagaattttgggacggagg 134
|||||| ||||| ||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 37 tttagtgttagatacatccgtatctagataaatctaagacaagctttttgggacggagg 95
Score = 58.0 bits (29), Expect = 4e-08
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 18 cctccgtccccaaattcttgtcttagatttgtctaaatacggatgtatc 66
|||||||||| ||| |||||||||||||| |||| |||||||||||||
Sbjct: 95 cctccgtcccaaaaagcttgtcttagatttatctagatacggatgtatc 47
>RF00906;MIR1122;AP009567.1/9225-9090 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 136
Score = 61.9 bits (31), Expect = 2e-09
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 82 attagacacatccgtatctagacgaatctaagacaagaattttgggacggagggagtat 140
|||||| |||| | ||||||||| ||||||||||||||||||| ||| ||||||||||
Sbjct: 62 attagatacattcatatctagacaaatctaagacaagaattttatgacagagggagtat 4
Score = 60.0 bits (30), Expect = 9e-09
Identities = 106/130 (81%), Gaps = 1/130 (0%)
Strand = Plus / Plus
Query: 12 atactccctccgtccccaaattcttgtcttagatttgtctaaatacggatgtatcaagtc 71
|||||||||| ||| |||||||||||||||||||||||| ||| | ||||||| | ||
Sbjct: 4 atactccctctgtcataaaattcttgtcttagatttgtctagatatgaatgtatctaatc 63
Query: 72 atgtttt-agtattagacacatccgtatctagacgaatctaagacaagaattttgggacg 130
| ||||| | ||||| ||| || | | ||||| || ||||||||||| |||| ||||
Sbjct: 64 acgttttgacatttagatacaaccatttttagacaaacctaagacaagatttttaagacg 123
Query: 131 gagggagtat 140
||||||||||
Sbjct: 124 gagggagtat 133
Score = 46.1 bits (23), Expect = 1e-04
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 12 atactccctccgtccccaaattcttgtcttagatttgtctaaa 54
|||||||||||||| ||| ||||||||||| ||||||||||
Sbjct: 133 atactccctccgtcttaaaaatcttgtcttaggtttgtctaaa 91
>RF00906;MIR1122;X73528.1/281-181 4565:Triticum aestivum (bread
wheat)
Length = 101
Score = 58.0 bits (29), Expect = 4e-08
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 96 tatctagacgaatctaagacaagaattttgggacggagggagtat 140
|||| |||| ||||||||||||||||||||| ||| |||||||||
Sbjct: 48 tatcaagacaaatctaagacaagaattttggaacgaagggagtat 4
Score = 58.0 bits (29), Expect = 4e-08
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 95 gtatctagacgaatctaagacaagaattttgggacggagggagta 139
|||||||||| ||||||||||||||||||| || ||||||||||
Sbjct: 53 gtatctagacaaatctaagacaagaattttaagatggagggagta 97
Score = 56.0 bits (28), Expect = 1e-07
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 12 atactccctccgtccccaaattcttgtcttagatttgtct 51
||||||||| ||| || |||||||||||||||||||||||
Sbjct: 4 atactcccttcgttccaaaattcttgtcttagatttgtct 43
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 29 aaattcttgtcttagatttgtctaaatac 57
|||||||||||||||||||||||| ||||
Sbjct: 81 aaattcttgtcttagatttgtctagatac 53
>RF00906;MIR1122;AY235466.1/780-656 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 108 tctaagacaagaattttgggacggagggagtatc 141
|||| |||||| ||||||||||||||||||||||
Sbjct: 90 tctacgacaagtattttgggacggagggagtatc 123
>RF00906;MIR1122;EU862571.1/695-592 98113:Hordeum murinum subsp.
glaucum
Length = 104
Score = 52.0 bits (26), Expect = 2e-06
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 83 ttagacacatccgtatctagacgaatctaagacaagaattttgggacggagggagtat 140
||||| ||||||||||||||| ||||| ||||||| || ||||||||||| |||||
Sbjct: 61 ttagatacatccgtatctagataaatcttagacaagctttctgggacggaggtagtat 4
Score = 46.1 bits (23), Expect = 1e-04
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 12 atactccctccgtccccaaattcttgtcttagatttgtctaaatacggatgtatc 66
||||| |||||||||| || ||||||| |||||| |||| |||||||||||||
Sbjct: 4 atactacctccgtcccagaaagcttgtctaagatttatctagatacggatgtatc 58
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 106 aatctaagacaagaattttgggacggagggagta 139
||||||| ||||| |||||||||||||||||||
Sbjct: 67 aatctaaaacaagttttttgggacggagggagta 100
>RF00906;MIR1122;AY235464.1/714-838 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 50.1 bits (25), Expect = 9e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 108 tctaagacaagaattttgggacggagggagtat 140
|||| |||||| |||||||||||||||||||||
Sbjct: 36 tctacgacaagtattttgggacggagggagtat 4
>RF00906;MIR1122;AACV01013954.1/10702-10856 39947:Oryza sativa
Japonica Group
Length = 155
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 120 attttgggacggagggagtatcat 143
||||||||||||||||||||||||
Sbjct: 24 attttgggacggagggagtatcat 1
>RF00906;MIR1122;AP008207.1/24395058-24395107 39947:Oryza sativa
Japonica Group
Length = 50
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 120 attttgggacggagggagtatcat 143
||||||||||||||||||||||||
Sbjct: 27 attttgggacggagggagtatcat 50
>RF00906;MIR1122;AACV01014374.1/13115-13004 39947:Oryza sativa
Japonica Group
Length = 112
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 120 attttgggacggagggagtatca 142
|||||||||||||||||||||||
Sbjct: 89 attttgggacggagggagtatca 111
>RF00906;MIR1122;DQ904440.1/75385-75530 52163:Triticum monococcum
subsp. aegilopoides
Length = 146
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 113 gacaagaattttgggacggagggagtatca 142
|||||| ||||| |||||||||||||||||
Sbjct: 116 gacaagtattttcggacggagggagtatca 145
>RF00906;MIR1122;AY465427.2/1983-1848 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 136
Score = 44.1 bits (22), Expect = 5e-04
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 13 tactccctccgtccccaaattcttgtcttagatttgtctaaatacggatgtatc 66
|||||||||||| || |||| ||| ||| ||||||||||| |||||||||||
Sbjct: 5 tactccctccgttccaaaatagttgacttgaatttgtctaaacacggatgtatc 58
>RF00906;MIR1122;DQ175992.1/50-154 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 110 taagacaagaattttgggacggagggagta 139
|||||||| ||||||||||||||||||||
Sbjct: 72 taagacaattattttgggacggagggagta 101
>RF00906;MIR1122;AAAA02020504.1/20392-20526 39946:Oryza sativa
Indica Group
Length = 135
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 120 attttgggacggagggagtatc 141
||||||||||||||||||||||
Sbjct: 112 attttgggacggagggagtatc 133
>RF00906;MIR1122;AP008212.1/25859487-25859353 39947:Oryza sativa
Japonica Group
Length = 135
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 120 attttgggacggagggagtatc 141
||||||||||||||||||||||
Sbjct: 112 attttgggacggagggagtatc 133
>RF00906;MIR1122;AP003883.3/40264-40104 39947:Oryza sativa Japonica
Group
Length = 161
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 120 attttgggacggagggagtatc 141
||||||||||||||||||||||
Sbjct: 24 attttgggacggagggagtatc 3
