miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY821733.1/621-487 4568:Triticum monococcum
Length = 135
Score = 234 bits (118), Expect = 3e-61
Identities = 121/122 (99%)
Strand = Plus / Plus
Query: 11 tactccctccgtcccaaaattcttgtcttagatttgtctaaatacggatgtatcaagtca 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tactccctccgtcccaaaattcttgtcttagatttgtctaaatacggatgtatcaagtca 64
Query: 71 cgttttagtattagatacatccgtatctaggcaaatctaagacaagaattttgggacgga 130
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 65 cgttttagtattagatacatccgtatctaggcaaatctaagacaagaattttggaacgga 124
Query: 131 gg 132
||
Sbjct: 125 gg 126
Score = 89.7 bits (45), Expect = 1e-17
Identities = 107/125 (85%), Gaps = 2/125 (1%)
Strand = Plus / Minus
Query: 11 tactccctccgtcccaaaattcttgtcttagatttgtctaaatacggatgtatcaagtca 70
|||| ||||||| ||||||||||||||||||||||| ||| ||||||||||||| | | |
Sbjct: 131 tacttcctccgttccaaaattcttgtcttagatttgcctagatacggatgtatctaat-a 73
Query: 71 cgttttagt-attagatacatccgtatctaggcaaatctaagacaagaattttgggacgg 129
| || | | ||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 72 ctaaaacgtgacttgatacatccgtatttagacaaatctaagacaagaattttgggacgg 13
Query: 130 aggga 134
|||||
Sbjct: 12 aggga 8
>RF00906;MIR1122;FJ374610.1/683-817 4568:Triticum monococcum
Length = 135
Score = 190 bits (96), Expect = 4e-48
Identities = 117/124 (94%)
Strand = Plus / Plus
Query: 11 tactccctccgtcccaaaattcttgtcttagatttgtctaaatacggatgtatcaagtca 70
|||||| || ||||||||||||||||||||||||| |||||||| ||||||||||| |||
Sbjct: 5 tactccttctgtcccaaaattcttgtcttagatttttctaaatagggatgtatcaactca 64
Query: 71 cgttttagtattagatacatccgtatctaggcaaatctaagacaagaattttgggacgga 130
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 65 cgttttagtattagatacatccatatctagacaaatctaagacaagaattttgggacgga 124
Query: 131 ggga 134
||||
Sbjct: 125 ggga 128
Score = 91.7 bits (46), Expect = 2e-18
Identities = 52/54 (96%)
Strand = Plus / Minus
Query: 11 tactccctccgtcccaaaattcttgtcttagatttgtctaaatacggatgtatc 64
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 131 tactccctccgtcccaaaattcttgtcttagatttgtctagatatggatgtatc 78
>RF00906;MIR1122;AM932686.1/57613-57747 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 182 bits (92), Expect = 9e-46
Identities = 116/124 (93%)
Strand = Plus / Plus
Query: 11 tactccctccgtcccaaaattcttgtcttagatttgtctaaatacggatgtatcaagtca 70
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 5 tactccctcggtcccaaaattcttgtcttagatttgtctagatacggatgtatcaagtca 64
Query: 71 cgttttagtattagatacatccgtatctaggcaaatctaagacaagaattttgggacgga 130
| |||| |||||||||||||| |||||||| ||||||||||||||||| |||||||| ||
Sbjct: 65 cattttcgtattagatacatctgtatctagacaaatctaagacaagaaatttgggacaga 124
Query: 131 ggga 134
||||
Sbjct: 125 ggga 128
Score = 97.6 bits (49), Expect = 4e-20
Identities = 108/125 (86%), Gaps = 2/125 (1%)
Strand = Plus / Minus
Query: 11 tactccctccgtcccaaaattcttgtcttagatttgtctaaatacggatgtatcaagtca 70
||||||||| |||||||| ||||||||||||||||||||| |||| |||||||| | | |
Sbjct: 131 tactccctctgtcccaaatttcttgtcttagatttgtctagatacagatgtatctaat-a 73
Query: 71 cgttttagt-attagatacatccgtatctaggcaaatctaagacaagaattttgggacgg 129
|| || | | ||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 72 cgaaaatgtgacttgatacatccgtatctagacaaatctaagacaagaattttgggaccg 13
Query: 130 aggga 134
|||||
Sbjct: 12 aggga 8
>RF00906;MIR1122;AF277239.1/1056-1190 37679:Heteranthelium piliferum
Length = 135
Score = 168 bits (85), Expect = 1e-41
Identities = 114/124 (91%)
Strand = Plus / Plus
Query: 11 tactccctccgtcccaaaattcttgtcttagatttgtctaaatacggatgtatcaagtca 70
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 5 tactccctccgtcccaaaattcttgtcatagatttgtctaaatacggatgtatctagtca 64
Query: 71 cgttttagtattagatacatccgtatctaggcaaatctaagacaagaattttgggacgga 130
|||||||| ||||| |||| | |||||| |||||||||||| ||||||||||||||||
Sbjct: 65 tgttttagtgttagacacattcatatctaaacaaatctaagacnagaattttgggacgga 124
Query: 131 ggga 134
||||
Sbjct: 125 ggga 128
Score = 81.8 bits (41), Expect = 2e-15
Identities = 50/53 (94%)
Strand = Plus / Minus
Query: 82 tagatacatccgtatctaggcaaatctaagacaagaattttgggacggaggga 134
||||||||||||||| ||| |||||||| ||||||||||||||||||||||||
Sbjct: 60 tagatacatccgtatttagacaaatctatgacaagaattttgggacggaggga 8
>RF00906;MIR1122;EU660895.1/53244-53110 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 167 bits (84), Expect = 5e-41
Identities = 114/124 (91%)
Strand = Plus / Minus
Query: 11 tactccctccgtcccaaaattcttgtcttagatttgtctaaatacggatgtatcaagtca 70
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 131 tactccctccatcccaaaattcttgtcttagatttgtctaaatacggatgtatgaagtca 72
Query: 71 cgttttagtattagatacatccgtatctaggcaaatctaagacaagaattttgggacgga 130
||||||||||| |||||| |||||||| ||||| |||||||||||||||| ||||||
Sbjct: 71 tattttagtattaaatacatatgtatctagacaaatgtaagacaagaattttgagacgga 12
Query: 131 ggga 134
||||
Sbjct: 11 ggga 8
Score = 75.8 bits (38), Expect = 1e-13
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 85 atacatccgtatctaggcaaatctaagacaagaattttgggacggaggga 134
|||||||||||| ||| ||||||||||||||||||||||||| |||||||
Sbjct: 79 atacatccgtatttagacaaatctaagacaagaattttgggatggaggga 128
Score = 65.9 bits (33), Expect = 1e-10
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 11 tactccctccgtcccaaaattcttgtcttagatttgtctaaatac 55
||||||||||||| |||||||||||||||| ||||||||| ||||
Sbjct: 5 tactccctccgtctcaaaattcttgtcttacatttgtctagatac 49
>RF00906;MIR1122;EU660901.1/93085-92951 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 159 bits (80), Expect = 1e-38
Identities = 113/124 (91%)
Strand = Plus / Plus
Query: 11 tactccctccgtcccaaaattcttgtcttagatttgtctaaatacggatgtatcaagtca 70
||||| |||||||| |||||||||||||| ||||||||||| ||| |||||||||||||
Sbjct: 5 tactcgctccgtcctgaaattcttgtcttaaatttgtctaaagacgaatgtatcaagtca 64
Query: 71 cgttttagtattagatacatccgtatctaggcaaatctaagacaagaattttgggacgga 130
|||||| ||||||||||||||||||||||| |||| ||| |||||||||||||||||||
Sbjct: 65 cgtttttgtattagatacatccgtatctagacaaagctacaacaagaattttgggacgga 124
Query: 131 ggga 134
||||
Sbjct: 125 ggga 128
Score = 75.8 bits (38), Expect = 1e-13
Identities = 50/54 (92%)
Strand = Plus / Minus
Query: 11 tactccctccgtcccaaaattcttgtcttagatttgtctaaatacggatgtatc 64
|||||||||||||||||||||||||| ||| |||||||| |||||||||||||
Sbjct: 131 tactccctccgtcccaaaattcttgttgtagctttgtctagatacggatgtatc 78
>RF00906;MIR1122;EF540321.1/52965-52831 4571:Triticum turgidum
Length = 135
Score = 157 bits (79), Expect = 5e-38
Identities = 112/123 (91%)
Strand = Plus / Minus
Query: 15 ccctccgtcccaaaattcttgtcttagatttgtctaaatacggatgtatcaagtcacgtt 74
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||| || ||
Sbjct: 127 ccctccgtcccaaaattcttgtcttaaatttgtctaaatacggatgtatctagttacatt 68
Query: 75 ttagtattagatacatccgtatctaggcaaatctaagacaagaattttgggacggaggga 134
||||| ||||||||||| |||||| ||||| ||||||||||||||||||| |||||||
Sbjct: 67 ttagtgttagatacatctttatctaaacaaatgtaagacaagaattttgggatggaggga 8
Query: 135 ata 137
|||
Sbjct: 7 ata 5
Score = 79.8 bits (40), Expect = 9e-15
Identities = 49/52 (94%)
Strand = Plus / Plus
Query: 82 tagatacatccgtatctaggcaaatctaagacaagaattttgggacggaggg 133
||||||||||||||| ||| ||||| ||||||||||||||||||||||||||
Sbjct: 76 tagatacatccgtatttagacaaatttaagacaagaattttgggacggaggg 127
>RF00906;MIR1122;AY485644.1/84291-84425 4568:Triticum monococcum
Length = 135
Score = 157 bits (79), Expect = 5e-38
Identities = 115/127 (90%)
Strand = Plus / Plus
Query: 11 tactccctccgtcccaaaattcttgtcttagatttgtctaaatacggatgtatcaagtca 70
||||||||||||||||||||| |||||||| ||||||||||||| |||||||| ||| |
Sbjct: 5 tactccctccgtcccaaaattgttgtcttaaatttgtctaaatatggatgtatgtagtta 64
Query: 71 cgttttagtattagatacatccgtatctaggcaaatctaagacaagaattttgggacgga 130
| ||||||| ||||||||||||||||||| ||||| ||||||||||||||||||| |||
Sbjct: 65 cattttagtgttagatacatccgtatctaaacaaatgtaagacaagaattttgggatgga 124
Query: 131 gggaata 137
|||||||
Sbjct: 125 gggaata 131
Score = 69.9 bits (35), Expect = 9e-12
Identities = 47/51 (92%)
Strand = Plus / Minus
Query: 14 tccctccgtcccaaaattcttgtcttagatttgtctaaatacggatgtatc 64
||||||| ||||||||||||||||||| |||||| || |||||||||||||
Sbjct: 128 tccctccatcccaaaattcttgtcttacatttgtttagatacggatgtatc 78
Score = 60.0 bits (30), Expect = 9e-09
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 85 atacatccgtatctaggcaaatctaagacaagaattttgggacggaggga 134
|||||||| ||| ||| ||||| |||||||| ||||||||||||||||||
Sbjct: 57 atacatccatatttagacaaatttaagacaacaattttgggacggaggga 8
>RF00906;MIR1122;AY853252.1/217307-217173 4513:Hordeum vulgare
Length = 135
Score = 147 bits (74), Expect = 5e-35
Identities = 110/122 (90%)
Strand = Plus / Plus
Query: 11 tactccctccgtcccaaaattcttgtcttagatttgtctaaatacggatgtatcaagtca 70
|||||||||| || ||||||||| |||||| |||| |||||||| ||||||||| |||||
Sbjct: 5 tactccctccatctcaaaattctggtcttaaatttctctaaatatggatgtatctagtca 64
Query: 71 cgttttagtattagatacatccgtatctaggcaaatctaagacaagaattttgggacgga 130
||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 65 cgttttagtgttagatacatccgtatctagataaatcctagacaagaattttgggacgga 124
Query: 131 gg 132
||
Sbjct: 125 gg 126
Score = 67.9 bits (34), Expect = 4e-11
Identities = 49/54 (90%)
Strand = Plus / Minus
Query: 11 tactccctccgtcccaaaattcttgtcttagatttgtctaaatacggatgtatc 64
|||| ||||||||||||||||||||||| ||||| |||| |||||||||||||
Sbjct: 131 tactacctccgtcccaaaattcttgtctaggatttatctagatacggatgtatc 78
>RF00906;MIR1122;AJ704455.1/466-601 4513:Hordeum vulgare
Length = 136
Score = 129 bits (65), Expect = 1e-29
Identities = 111/125 (88%), Gaps = 1/125 (0%)
Strand = Plus / Plus
Query: 11 tactccctccgtcccaaaattcttgtcttagatttgtctaaatacggatgtatcaagtca 70
|||||||||||||||||||||||||||||| ||||||||| ||| | ||||||| |||||
Sbjct: 5 tactccctccgtcccaaaattcttgtcttacatttgtctagatatgaatgtatctagtca 64
Query: 71 cgttttagta-ttagatacatccgtatctaggcaaatctaagacaagaattttgggacgg 129
|||||||||| || |||||||| | |||| |||| ||||||||||||||||||||||
Sbjct: 65 cgttttagtattttgatacatctatttctaaacaaacttaagacaagaattttgggacgg 124
Query: 130 aggga 134
|||||
Sbjct: 125 aggga 129
Score = 73.8 bits (37), Expect = 6e-13
Identities = 49/53 (92%)
Strand = Plus / Minus
Query: 82 tagatacatccgtatctaggcaaatctaagacaagaattttgggacggaggga 134
||||||||| | ||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 60 tagatacattcatatctagacaaatgtaagacaagaattttgggacggaggga 8
>RF00906;MIR1122;DQ145528.1/676-542 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 135
Score = 127 bits (64), Expect = 4e-29
Identities = 102/112 (91%), Gaps = 2/112 (1%)
Strand = Plus / Plus
Query: 21 gtcccaaaattcttgtcttagatttgtctaaatacggatgtatcaagtcacgttttagta 80
|||||||||||||||||||||||||||||||||| | ||||||| ||||| |||||||||
Sbjct: 15 gtcccaaaattcttgtcttagatttgtctaaatatgaatgtatctagtcatgttttagta 74
Query: 81 -ttagatacatccgtatctaggcaaatctaagacaagaattttgggacggag 131
|||||||||||| | ||||| | ||| ||||||||||||||||||||||||
Sbjct: 75 tttagatacatccatttctagac-aatttaagacaagaattttgggacggag 125
Score = 65.9 bits (33), Expect = 1e-10
Identities = 51/57 (89%)
Strand = Plus / Minus
Query: 82 tagatacatccgtatctaggcaaatctaagacaagaattttgggacggagggaatag 138
||||||||| | ||| ||| |||||||||||||||||||||||||| |||||||||
Sbjct: 60 tagatacattcatatttagacaaatctaagacaagaattttgggacaaagggaatag 4
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 11 tactccctccgtcccaaaattcttgtctta 40
||||| ||||||||||||||||||||||||
Sbjct: 131 tactctctccgtcccaaaattcttgtctta 102
>RF00906;MIR1122;DQ890018.1/183-48 77009:Hordeum vulgare subsp.
spontaneum
Length = 136
Score = 121 bits (61), Expect = 3e-27
Identities = 110/125 (88%), Gaps = 1/125 (0%)
Strand = Plus / Plus
Query: 11 tactccctccgtcccaaaattcttgtcttagatttgtctaaatacggatgtatcaagtca 70
|||||||||||| |||||||||||||||||||||||| || ||| | ||||||| ||| |
Sbjct: 5 tactccctccgttccaaaattcttgtcttagatttgtttagatatgaatgtatctagtta 64
Query: 71 cgttttagta-ttagatacatccgtatctaggcaaatctaagacaagaattttgggacgg 129
||||||||| ||||||||||| | ||||| |||| |||||||||||||||| ||||||
Sbjct: 65 agttttagtatttagatacatcaatttctagacaaagctaagacaagaattttaggacgg 124
Query: 130 aggga 134
|||||
Sbjct: 125 aggga 129
Score = 65.9 bits (33), Expect = 1e-10
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 82 tagatacatccgtatctaggcaaatctaagacaagaattttgggacggaggga 134
||||||||| | |||||| ||||||||||||||||||||||| |||||||||
Sbjct: 60 tagatacattcatatctaaacaaatctaagacaagaattttggaacggaggga 8
Score = 63.9 bits (32), Expect = 6e-10
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 11 tactccctccgtcccaaaattcttgtcttagatttgtcta 50
|||||||||||||| |||||||||||||||| ||||||||
Sbjct: 132 tactccctccgtcctaaaattcttgtcttagctttgtcta 93
>RF00906;MIR1122;AF254799.1/46723-46588 4513:Hordeum vulgare
Length = 136
Score = 113 bits (57), Expect = 7e-25
Identities = 109/125 (87%), Gaps = 1/125 (0%)
Strand = Plus / Plus
Query: 11 tactccctccgtcccaaaattcttgtcttagatttgtctaaatacggatgtatcaagtca 70
|||||| ||||||||||||||||||||||| ||||||||| ||| | ||||||| |||||
Sbjct: 5 tactccttccgtcccaaaattcttgtcttaaatttgtctatatatgaatgtatctagtca 64
Query: 71 cgttttagta-ttagatacatccgtatctaggcaaatctaagacaagaattttgggacgg 129
| ||||||| |||||||||||| | | ||| ||| |||||||||||||||||| ||||
Sbjct: 65 tggtttagtatttagatacatccatgtgtagacaatgctaagacaagaattttggaacgg 124
Query: 130 aggga 134
|||||
Sbjct: 125 aggga 129
Score = 60.0 bits (30), Expect = 9e-09
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 11 tactccctccgtcccaaaattcttgtcttagatttgtctaaatacggatgtatc 64
|||||||||||| |||||||||||||||||| ||||||| | | |||||||||
Sbjct: 132 tactccctccgttccaaaattcttgtcttagcattgtctacacatggatgtatc 79
Score = 58.0 bits (29), Expect = 3e-08
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 82 tagatacatccgtatctaggcaaatctaagacaagaattttgggacgga 130
||||||||| | ||| ||| ||||| |||||||||||||||||||||||
Sbjct: 60 tagatacattcatatatagacaaatttaagacaagaattttgggacgga 12
>RF00906;MIR1122;AF427791.1/222786-222921 4513:Hordeum vulgare
Length = 136
Score = 113 bits (57), Expect = 7e-25
Identities = 109/125 (87%), Gaps = 1/125 (0%)
Strand = Plus / Plus
Query: 11 tactccctccgtcccaaaattcttgtcttagatttgtctaaatacggatgtatcaagtca 70
||||||||||||||||||||| ||||||||||||||| || ||| | ||||||| |||||
Sbjct: 5 tactccctccgtcccaaaattattgtcttagatttgtttagatatgaatgtatctagtca 64
Query: 71 cgttttagt-attagatacatccgtatctaggcaaatctaagacaagaattttgggacgg 129
|||||||| |||||||||||| | |||| |||| |||||||||||||||||||||
Sbjct: 65 agttttagtaattagatacatctatttctaaacaaagttaagacaagaattttgggacga 124
Query: 130 aggga 134
|||||
Sbjct: 125 aggga 129
Score = 65.9 bits (33), Expect = 1e-10
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 82 tagatacatccgtatctaggcaaatctaagacaagaattttgggacggaggga 134
||||||||| | |||||| |||||||||||||| ||||||||||||||||||
Sbjct: 60 tagatacattcatatctaaacaaatctaagacaataattttgggacggaggga 8
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 11 tactccctccgtcccaaaattcttgtctta 40
|||||||| |||||||||||||||||||||
Sbjct: 132 tactcccttcgtcccaaaattcttgtctta 103
>RF00906;MIR1122;DQ890004.1/48-183 4513:Hordeum vulgare
Length = 136
Score = 113 bits (57), Expect = 7e-25
Identities = 109/125 (87%), Gaps = 1/125 (0%)
Strand = Plus / Minus
Query: 11 tactccctccgtcccaaaattcttgtcttagatttgtctaaatacggatgtatcaagtca 70
|||| ||||||| |||||||||||||||||||||||| || ||| | ||||||| ||| |
Sbjct: 132 tactacctccgttccaaaattcttgtcttagatttgtttagatatgaatgtatctagtta 73
Query: 71 cgttttagta-ttagatacatccgtatctaggcaaatctaagacaagaattttgggacgg 129
||||||||| ||||||||||| | ||||| |||| |||||||||||||||| ||||||
Sbjct: 72 agttttagtatttagatacatcaatttctagacaaagctaagacaagaattttaggacgg 13
Query: 130 aggga 134
|||||
Sbjct: 12 aggga 8
Score = 63.9 bits (32), Expect = 6e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 11 tactccctccgtcccaaaattcttgtcttagatttgtcta 50
|||||||||||||| |||||||||||||||| ||||||||
Sbjct: 5 tactccctccgtcctaaaattcttgtcttagctttgtcta 44
Score = 61.9 bits (31), Expect = 2e-09
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 82 tagatacatccgtatctaggcaaatctaagacaagaattttgggacggagg 132
||||||||| | |||||| ||||||||||||||||||||||| |||||||
Sbjct: 77 tagatacattcatatctaaacaaatctaagacaagaattttggaacggagg 127
>RF00906;MIR1122;AF459639.1/191055-190921 4568:Triticum monococcum
Length = 135
Score = 103 bits (52), Expect = 6e-22
Identities = 106/124 (85%)
Strand = Plus / Minus
Query: 11 tactccctccgtcccaaaattcttgtcttagatttgtctaaatacggatgtatcaagtca 70
|||||||||||| ||||| | |||||||| |||||||||| ||||||||||||| || |
Sbjct: 131 tactccctccgttccaaattacttgtcttggatttgtctagatacggatgtatctagact 72
Query: 71 cgttttagtattagatacatccgtatctaggcaaatctaagacaagaattttgggacgga 130
| ||||||| |||||| ||||||||||| ||||||||||||||| | || || |||||
Sbjct: 71 cattttagtgctagatatctccgtatctagacaaatctaagacaagtaattcggaacgga 12
Query: 131 ggga 134
||||
Sbjct: 11 ggga 8
Score = 71.9 bits (36), Expect = 2e-12
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 82 tagatacatccgtatctaggcaaatctaagacaagaattttgggacggagggaatagaac 141
||||||||||||||||||| |||||| |||||||| | ||||| ||||||||| ||||||
Sbjct: 76 tagatacatccgtatctagacaaatccaagacaagtaatttggaacggagggagtagaac 135
>RF00906;MIR1122;EU096089.1/14944-15085 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 142
Score = 103 bits (52), Expect = 6e-22
Identities = 112/131 (85%), Gaps = 7/131 (5%)
Strand = Plus / Plus
Query: 11 tactccctccgtcccaaaattcttgtcttagatttgtctaaatacggatgtatcaagtca 70
|||||||||||||||||| ||||||||||||||||||||| ||| | |||||| |||||
Sbjct: 5 tactccctccgtcccaaacttcttgtcttagatttgtctagatatgaatgtatgtagtca 64
Query: 71 cgttttagta-ttaga------tacatccgtatctaggcaaatctaagacaagaattttg 123
|||||| ||| ||||| ||||||| | | ||| |||| |||||||||||||||||
Sbjct: 65 cgttttggtatttagatacacctacatccatttatagacaaacctaagacaagaattttg 124
Query: 124 ggacggaggga 134
|||||||||||
Sbjct: 125 ggacggaggga 135
Score = 71.9 bits (36), Expect = 2e-12
Identities = 39/40 (97%)
Strand = Plus / Minus
Query: 11 tactccctccgtcccaaaattcttgtcttagatttgtcta 50
||||||||||||||||||||||||||||||| ||||||||
Sbjct: 138 tactccctccgtcccaaaattcttgtcttaggtttgtcta 99
Score = 67.9 bits (34), Expect = 4e-11
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 85 atacatccgtatctaggcaaatctaagacaagaattttgggacggaggga 134
|||||| | ||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 57 atacattcatatctagacaaatctaagacaagaagtttgggacggaggga 8
>RF00906;MIR1122;AY887089.1/1801-1936 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 136
Score = 99.6 bits (50), Expect = 1e-20
Identities = 108/126 (85%), Gaps = 1/126 (0%)
Strand = Plus / Plus
Query: 10 ttactccctccgtcccaaaattcttgtcttagatttgtctaaatacggatgtatcaagtc 69
|||||||||||||| ||||||| |||| || ||||||||| ||| ||||||||| |||
Sbjct: 4 ttactccctccgtctcaaaattattgttttgaatttgtctagatatggatgtatctagtt 63
Query: 70 acgttttagta-ttagatacatccgtatctaggcaaatctaagacaagaattttgggacg 128
|| |||||||| ||| || ||||| |||||| | ||||||||||||||||||||||||
Sbjct: 64 acattttagtatttaaatgcatccatatctaaaaacatctaagacaagaattttgggacg 123
Query: 129 gaggga 134
||||||
Sbjct: 124 gaggga 129
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 11 tactccctccgtcccaaaattcttgtcttagat 43
|||||||||||||||||||||||||||||||||
Sbjct: 132 tactccctccgtcccaaaattcttgtcttagat 100
Score = 50.1 bits (25), Expect = 8e-06
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 82 tagatacatccgtatctaggcaaatctaagacaagaattttgggacggaggga 134
||||||||||| ||||||| ||||| || |||| ||||||| ||||||||||
Sbjct: 60 tagatacatccatatctagacaaattcaaaacaataattttgagacggaggga 8
>RF00906;MIR1122;AY853252.1/33762-33628 4513:Hordeum vulgare
Length = 135
Score = 89.7 bits (45), Expect = 1e-17
Identities = 107/125 (85%), Gaps = 2/125 (1%)
Strand = Plus / Plus
Query: 11 tactccctccgtcccaaaattcttgtcttagatttgtctaaatacggatgtatcaagtca 70
||||||||||||| ||||||||||| |||| |||||| || ||||| ||||||| |||||
Sbjct: 5 tactccctccgtctcaaaattcttgccttatatttgtttagatacgaatgtatctagtca 64
Query: 71 cgttttagta-ttagatacatccgtatctaggcaaatctaagacaagaattttgggacgg 129
||||||| |||||||||||| ||||| |||| |||||||||||||||||| | ||
Sbjct: 65 -aatttagtatttagatacatccagttctagacaaagctaagacaagaattttggaatgg 123
Query: 130 aggga 134
|||||
Sbjct: 124 aggga 128
Score = 58.0 bits (29), Expect = 3e-08
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 82 tagatacatccgtatctaggcaaatctaagacaagaattttgggacggaggga 134
||||||||| |||||||| ||||| |||| ||||||||||| ||||||||||
Sbjct: 60 tagatacattcgtatctaaacaaatataaggcaagaattttgagacggaggga 8
Score = 56.0 bits (28), Expect = 1e-07
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 11 tactccctccgtcccaaaattcttgtcttagatttgtcta 50
|||||||||| | |||||||||||||||||| ||||||||
Sbjct: 131 tactccctccattccaaaattcttgtcttagctttgtcta 92
>RF00906;MIR1122;DQ123819.1/2832-2966 4571:Triticum turgidum
Length = 135
Score = 79.8 bits (40), Expect = 9e-15
Identities = 103/124 (83%)
Strand = Plus / Plus
Query: 11 tactccctccgtcccaaaattcttgtcttagatttgtctaaatacggatgtatcaagtca 70
|||||||||||| | || | ||||||||| ||||||||| ||||||||||||| || |
Sbjct: 5 tactccctccgttctgaattacttgtcttaaatttgtctagatacggatgtatctagact 64
Query: 71 cgttttagtattagatacatccgtatctaggcaaatctaagacaagaattttgggacgga 130
| ||||||| |||| | ||| |||||||| |||||| |||||||| | ||||| |||||
Sbjct: 65 cattttagtgctagacatatctgtatctagacaaatcgaagacaagtaatttggaacgga 124
Query: 131 ggga 134
||||
Sbjct: 125 ggga 128
Score = 54.0 bits (27), Expect = 5e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 82 tagatacatccgtatctaggcaaatctaagacaag 116
||||||||||||||||||| ||||| |||||||||
Sbjct: 60 tagatacatccgtatctagacaaatttaagacaag 26
Score = 50.1 bits (25), Expect = 8e-06
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 11 tactccctccgtcccaaaattcttgtcttagatttgtctaaatac 55
|||||||||||| ||||| | |||||||| |||||||||| ||||
Sbjct: 131 tactccctccgttccaaattacttgtcttcgatttgtctagatac 87
>RF00906;MIR1122;EU862588.1/607-710 4516:Hordeum bulbosum
Length = 104
Score = 79.8 bits (40), Expect = 9e-15
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 74 tttagtattagatacatccgtatctaggcaaatctaagacaagaattttgggacggaggg 133
|||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 37 tttagtgttagatacatccgtatctagataaatctaagacaagctttttgggacggaggt 96
Query: 134 aata 137
||||
Sbjct: 97 aata 100
Score = 65.9 bits (33), Expect = 1e-10
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 16 cctccgtcccaaaattcttgtcttagatttgtctaaatacggatgtatc 64
|||||||||||||| |||||||||||||| |||| |||||||||||||
Sbjct: 95 cctccgtcccaaaaagcttgtcttagatttatctagatacggatgtatc 47
>RF00906;MIR1122;AP009567.1/9225-9090 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 136
Score = 73.8 bits (37), Expect = 6e-13
Identities = 104/125 (83%), Gaps = 1/125 (0%)
Strand = Plus / Plus
Query: 11 tactccctccgtcccaaaattcttgtcttagatttgtctaaatacggatgtatcaagtca 70
||||||||| ||| ||||||||||||||||||||||||| ||| | ||||||| | |||
Sbjct: 5 tactccctctgtcataaaattcttgtcttagatttgtctagatatgaatgtatctaatca 64
Query: 71 cgtttt-agtattagatacatccgtatctaggcaaatctaagacaagaattttgggacgg 129
|||||| | ||||||||| || | | ||| |||| ||||||||||| |||| |||||
Sbjct: 65 cgttttgacatttagatacaaccatttttagacaaacctaagacaagatttttaagacgg 124
Query: 130 aggga 134
|||||
Sbjct: 125 aggga 129
Score = 61.9 bits (31), Expect = 2e-09
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 80 attagatacatccgtatctaggcaaatctaagacaagaatttt 122
||||||||||| | ||||||| |||||||||||||||||||||
Sbjct: 62 attagatacattcatatctagacaaatctaagacaagaatttt 20
Score = 52.0 bits (26), Expect = 2e-06
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 11 tactccctccgtcccaaaattcttgtcttagatttgtctaaa 52
||||||||||||| |||| ||||||||||| ||||||||||
Sbjct: 132 tactccctccgtcttaaaaatcttgtcttaggtttgtctaaa 91
>RF00906;MIR1122;EU626553.1/30213-30109 4572:Triticum urartu
Length = 105
Score = 71.9 bits (36), Expect = 2e-12
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 11 tactccctccgtcccaaaattcttgtcttagatttgtctaaatacgga 58
||||||||||||||||||||||||||||||||||| | || |||||||
Sbjct: 101 tactccctccgtcccaaaattcttgtcttagatttatttagatacgga 54
Score = 65.9 bits (33), Expect = 1e-10
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 90 tccgtatctaggcaaatctaagacaagaattttgggacggaggga 134
|||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 54 tccgtatctaaataaatctaagacaagaattttgggacggaggga 98
Score = 60.0 bits (30), Expect = 9e-09
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 87 acatccgtatctaggcaaatctaagacaagaattttgg 124
|||||||||||||| ||||||||||||||||||||||
Sbjct: 54 acatccgtatctagataaatctaagacaagaattttgg 17
Score = 60.0 bits (30), Expect = 9e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 24 ccaaaattcttgtcttagatttgtctaaatacggatgt 61
|||||||||||||||||||||| |||| ||||||||||
Sbjct: 17 ccaaaattcttgtcttagatttatctagatacggatgt 54
>RF00906;MIR1122;DJ023121.1/176-54 4513:Hordeum vulgare
Length = 123
Score = 71.9 bits (36), Expect = 2e-12
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 11 tactccctccgtcccaaaattcttgtcttagatttgtcta 50
|||||||||||||| |||||||||||||||||||||||||
Sbjct: 5 tactccctccgtcctaaaattcttgtcttagatttgtcta 44
Score = 65.9 bits (33), Expect = 1e-10
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 94 tatctaggcaaatctaagacaagaattttgggacggaggga 134
||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 48 tatctagacaaatctaagacaagaattttaggacggaggga 8
>RF00906;MIR1122;X73528.1/281-181 4565:Triticum aestivum (bread
wheat)
Length = 101
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 11 tactccctccgtcccaaaattcttgtcttagatttgtct 49
|||||||| ||| ||||||||||||||||||||||||||
Sbjct: 5 tactcccttcgttccaaaattcttgtcttagatttgtct 43
Score = 58.0 bits (29), Expect = 3e-08
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 11 tactccctccgtcccaaaattcttgtcttagatttgtctaaatac 55
|||||||||| || ||||||||||||||||||||||||| ||||
Sbjct: 97 tactccctccatcttaaaattcttgtcttagatttgtctagatac 53
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 93 gtatctaggcaaatctaagacaagaatttt 122
|||||||| |||||||||||||||||||||
Sbjct: 53 gtatctagacaaatctaagacaagaatttt 82
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 102 caaatctaagacaagaattttgggacggaggga 134
||||||||||||||||||||||| ||| |||||
Sbjct: 40 caaatctaagacaagaattttggaacgaaggga 8
>RF00906;MIR1122;EU862571.1/695-592 98113:Hordeum murinum subsp.
glaucum
Length = 104
Score = 56.0 bits (28), Expect = 1e-07
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 81 ttagatacatccgtatctaggcaaatctaagacaagaattttgggacggagg 132
|||||||||||||||||||| |||||| ||||||| || |||||||||||
Sbjct: 61 ttagatacatccgtatctagataaatcttagacaagctttctgggacggagg 10
Score = 52.0 bits (26), Expect = 2e-06
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 11 tactccctccgtcccaaaattcttgtcttagatttgtctaaatacggatgtatc 64
|||| ||||||||||| || ||||||| |||||| |||| |||||||||||||
Sbjct: 5 tactacctccgtcccagaaagcttgtctaagatttatctagatacggatgtatc 58
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 11 tactccctccgtcccaaaattcttgtcttagattt 45
||||||||||||||||||| ||||| ||||||||
Sbjct: 100 tactccctccgtcccaaaaaacttgttttagattt 66
>RF00906;MIR1122;AY465427.2/1983-1848 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 136
Score = 52.0 bits (26), Expect = 2e-06
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 11 tactccctccgtcccaaaattcttgtcttagatttgtctaaatacggatgtatc 64
|||||||||||| ||||||| ||| ||| ||||||||||| |||||||||||
Sbjct: 5 tactccctccgttccaaaatagttgacttgaatttgtctaaacacggatgtatc 58
>RF00906;MIR1122;AY235466.1/780-656 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 11 tactccctccgtcccaaaattcttgtcttaga 42
|||||||||||||||||||| |||||| ||||
Sbjct: 121 tactccctccgtcccaaaatacttgtcgtaga 90
Score = 44.1 bits (22), Expect = 5e-04
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 73 ttttagtattagatacatccgtatctaggcaaatctaagacaagaattttgggacggagg 132
||||||| ||||||||||| | | || ||| |||| |||||| |||||||||||||||
Sbjct: 57 ttttagttctagatacatccatttttatgcatttctacgacaagtattttgggacggagg 116
Query: 133 ga 134
||
Sbjct: 117 ga 118
>RF00906;MIR1122;AY235464.1/714-838 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 11 tactccctccgtcccaaaattcttgtcttaga 42
|||||||||||||||||||| |||||| ||||
Sbjct: 5 tactccctccgtcccaaaatacttgtcgtaga 36
Score = 44.1 bits (22), Expect = 5e-04
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 73 ttttagtattagatacatccgtatctaggcaaatctaagacaagaattttgggacggagg 132
||||||| ||||||||||| | | || ||| |||| |||||| |||||||||||||||
Sbjct: 69 ttttagttctagatacatccatttttatgcatttctacgacaagtattttgggacggagg 10
Query: 133 ga 134
||
Sbjct: 9 ga 8
>RF00906;MIR1122;AC229754.2/94242-94126 63629:Oryza minuta
Length = 117
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 7 gatttactccctccgtcccaaaat 30
||||||||||||||||||||||||
Sbjct: 117 gatttactccctccgtcccaaaat 94
>RF00906;MIR1122;AB182945.1/6773-6906 4565:Triticum aestivum
(bread wheat)
Length = 134
Score = 46.1 bits (23), Expect = 1e-04
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 14 tccctccgtcccaaaattcttgtcttagatttgtctaaatacggatgtatc 64
||||||||||||||||| |||||| |||||||| ||| | |||||||||
Sbjct: 8 tccctccgtcccaaaatgagtgtcttggatttgtccaaaaatggatgtatc 58
>RF00906;MIR1122;DQ175992.1/50-154 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 11 tactccctccgtcccaaaattcttgtctta 40
|||||||||||||||||||| ||||||||
Sbjct: 101 tactccctccgtcccaaaataattgtctta 72
>RF00906;MIR1122;AP008207.1/5687502-5687599 39947:Oryza sativa
Japonica Group
Length = 98
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 8 atttactccctccgtcccaaaa 29
||||||||||||||||||||||
Sbjct: 97 atttactccctccgtcccaaaa 76
