miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01059;mir-598;AAGJ02108092.1/1014-1098 7668:Strongylocentrotus
purpuratus
Length = 85
Score = 52.0 bits (26), Expect = 4e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 10 catcatcatcatcatcgtcgtcgtca 35
||||||||||||||||||||||||||
Sbjct: 57 catcatcatcatcatcgtcgtcgtca 82
>RF01059;mir-598;ACCP01000230.1/53511-53414 564608:Micromonas
pusilla CCMP1545
Length = 98
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 catcatcatcatcatcgtcgtcgtc 34
|||||||||||||||||||||||||
Sbjct: 51 catcatcatcatcatcgtcgtcgtc 75
>RF01059;mir-598;AASC02058861.1/4716-4811 6500:Aplysia californica
(California sea hare)
Length = 96
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 10 catcatcatcatcatcgtcgtcgtc 34
|||||||||||||||||||||||||
Sbjct: 29 catcatcatcatcatcgtcgtcgtc 5
>RF01059;mir-598;ABBA01075593.1/42941-42879 9606:Homo sapiens
(human)
Length = 63
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 10 catcatcatcatcatcgtcgtcgtc 34
|||||||||||||||||||||||||
Sbjct: 32 catcatcatcatcatcgtcgtcgtc 8
Score = 44.1 bits (22), Expect = 9e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 10 catcatcatcatcatcgtcgtcgtca 35
||||||||||||| ||||||||||||
Sbjct: 29 catcatcatcatcgtcgtcgtcgtca 4
>RF01059;mir-598;AABR04154735.1/655-538 10116:Rattus norvegicus
(Norway rat)
Length = 118
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 catcatcatcatcatcgtcgtcgtc 34
|||||||||||||||||||||||||
Sbjct: 54 catcatcatcatcatcgtcgtcgtc 78
Score = 44.1 bits (22), Expect = 9e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 10 catcatcatcatcatcgtcgtcgtca 35
|||||||||||||||| |||||||||
Sbjct: 93 catcatcatcatcatcatcgtcgtca 118
>RF01059;mir-598;AAWZ01029771.1/63072-63013 28377:Anolis
carolinensis (green anole)
Length = 60
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 10 catcatcatcatcatcgtcgtcgtc 34
|||||||||||||||||||||||||
Sbjct: 29 catcatcatcatcatcgtcgtcgtc 5
>RF01059;mir-598;AAGE02028713.1/58067-58135 7159:Aedes aegypti
(yellow fever mosquito)
Length = 69
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 11 atcatcatcatcatcgtcgtcgtca 35
|||||||||||||||||||||||||
Sbjct: 40 atcatcatcatcatcgtcgtcgtca 16
>RF01059;mir-598;AAQB01006160.1/2820-2729 7260:Drosophila
willistoni
Length = 92
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 10 catcatcatcatcatcgtcgtcgtc 34
|||||||||||||||||||||||||
Sbjct: 29 catcatcatcatcatcgtcgtcgtc 5
>RF01059;mir-598;ABJB010280147.1/6760-6855 6945:Ixodes scapularis
(black-legged tick)
Length = 96
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 11 atcatcatcatcatcgtcgtcgtca 35
|||||||||||||||||||||||||
Sbjct: 43 atcatcatcatcatcgtcgtcgtca 19
>RF01059;mir-598;CABF01000470.1/3501-3638 6182:Schistosoma
japonicum
Length = 138
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 12 tcatcatcatcatcgtcgtcgtca 35
||||||||||||||||||||||||
Sbjct: 45 tcatcatcatcatcgtcgtcgtca 22
>RF01059;mir-598;CABD01119816.1/4613-4542 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 72
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 atcatcatcatcatcgtcgtcgtc 34
||||||||||||||||||||||||
Sbjct: 39 atcatcatcatcatcgtcgtcgtc 62
>RF01059;mir-598;AANU01257697.1/23003-23111 9544:Macaca mulatta
(rhesus monkey)
Length = 109
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 12 tcatcatcatcatcgtcgtcgtca 35
||||||||||||||||||||||||
Sbjct: 80 tcatcatcatcatcgtcgtcgtca 103
>RF01059;mir-598;AAZO01003332.1/20363-20473 121224:Pediculus
humanus corporis (human body louse)
Length = 111
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 10 catcatcatcatcatcgtcgtcgt 33
||||||||||||||||||||||||
Sbjct: 35 catcatcatcatcatcgtcgtcgt 12
>RF01059;mir-598;AAZO01001770.1/7300-7199 121224:Pediculus humanus
corporis (human body louse)
Length = 102
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 10 catcatcatcatcatcgtcgtcgt 33
||||||||||||||||||||||||
Sbjct: 29 catcatcatcatcatcgtcgtcgt 6
>RF01059;mir-598;AAZO01002250.1/1532-1659 121224:Pediculus humanus
corporis (human body louse)
Length = 128
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 10 catcatcatcatcatcgtcgtcgt 33
||||||||||||||||||||||||
Sbjct: 26 catcatcatcatcatcgtcgtcgt 3
>RF01059;mir-598;EU747721.1/119746-119611 92521:Oryctes rhinoceros
virus
Length = 136
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 13 catcatcatcatcgtcgtcgtca 35
|||||||||||||||||||||||
Sbjct: 111 catcatcatcatcgtcgtcgtca 133
>RF01059;mir-598;AAPN01062172.1/1275-1171 9258:Ornithorhynchus
anatinus (platypus)
Length = 105
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 9 acatcatcatcatcatcgtcgtcgtca 35
||||| |||||||||||||||||||||
Sbjct: 42 acatcgtcatcatcatcgtcgtcgtca 16
>RF01059;mir-598;ABEP02009992.1/7698-7571 7739:Branchiostoma
floridae (Florida lancelet)
Length = 128
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 11 atcatcatcatcatcgtcgtcgt 33
|||||||||||||||||||||||
Sbjct: 34 atcatcatcatcatcgtcgtcgt 12
>RF01059;mir-598;AACY020727500.1/262-353 408172:marine metagenome
Length = 92
Score = 44.1 bits (22), Expect = 9e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 10 catcatcatcatcatcgtcgtcgtca 35
|||||||||||||||| |||||||||
Sbjct: 79 catcatcatcatcatcatcgtcgtca 54
>RF01059;mir-598;ABIM01008265.1/2543-2636 3649:Carica papaya
(papaya)
Length = 94
Score = 44.1 bits (22), Expect = 9e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 10 catcatcatcatcatcgtcgtcgtca 35
|||||||||||||||||| |||||||
Sbjct: 32 catcatcatcatcatcgtagtcgtca 7
>RF01059;mir-598;AASG02000063.1/8134-8011 3988:Ricinus communis
(castor bean)
Length = 124
Score = 44.1 bits (22), Expect = 9e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 10 catcatcatcatcatcgtcgtcgtca 35
||||| ||||||||||||||||||||
Sbjct: 47 catcaccatcatcatcgtcgtcgtca 22
>RF01059;mir-598;AASC02006732.1/16749-16628 6500:Aplysia
californica (California sea hare)
Length = 122
Score = 44.1 bits (22), Expect = 9e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 10 catcatcatcatcatcgtcgtcgtca 35
|||| |||||||||||||||||||||
Sbjct: 32 catcctcatcatcatcgtcgtcgtca 7
>RF01059;mir-598;AASC02014353.1/13263-13358 6500:Aplysia
californica (California sea hare)
Length = 96
Score = 44.1 bits (22), Expect = 9e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 10 catcatcatcatcatcgtcgtcgtca 35
||||||||||||||||||| ||||||
Sbjct: 77 catcatcatcatcatcgtcatcgtca 52
>RF01059;mir-598;AASC02010496.1/2194-2290 6500:Aplysia californica
(California sea hare)
Length = 97
Score = 44.1 bits (22), Expect = 9e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 10 catcatcatcatcatcgtcgtcgtca 35
||||||||||||||||||| ||||||
Sbjct: 53 catcatcatcatcatcgtcatcgtca 28
>RF01059;mir-598;AASC02020048.1/528-624 6500:Aplysia californica
(California sea hare)
Length = 97
Score = 44.1 bits (22), Expect = 9e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 atcatcatcatcgtcgtcgtca 35
||||||||||||||||||||||
Sbjct: 61 atcatcatcatcgtcgtcgtca 82
>RF01059;mir-598;ABRR01251863.1/4422-4510 30538:Lama pacos
(alpaca)
Length = 89
Score = 44.1 bits (22), Expect = 9e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 10 catcatcatcatcatcgtcgtcgtca 35
|||||||||||||||| |||||||||
Sbjct: 47 catcatcatcatcatcatcgtcgtca 22
>RF01059;mir-598;AACZ02022114.1/7639-7553 9598:Pan troglodytes
(chimpanzee)
Length = 87
Score = 44.1 bits (22), Expect = 9e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 atcatcatcatcgtcgtcgtca 35
||||||||||||||||||||||
Sbjct: 51 atcatcatcatcgtcgtcgtca 72
>RF01059;mir-598;AAHX01322615.1/321-203 10116:Rattus norvegicus
(Norway rat)
Length = 119
Score = 44.1 bits (22), Expect = 9e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 10 catcatcatcatcatcgtcgtcgtca 35
|||||||||||||||| |||||||||
Sbjct: 32 catcatcatcatcatcatcgtcgtca 7
>RF01059;mir-598;AAZO01001814.1/10167-10045 121224:Pediculus
humanus corporis (human body louse)
Length = 123
Score = 44.1 bits (22), Expect = 9e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 10 catcatcatcatcatcgtcgtc 31
||||||||||||||||||||||
Sbjct: 29 catcatcatcatcatcgtcgtc 8
>RF01059;mir-598;AAZO01004876.1/1291-1175 121224:Pediculus humanus
corporis (human body louse)
Length = 117
Score = 44.1 bits (22), Expect = 9e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 10 catcatcatcatcatcgtcgtc 31
||||||||||||||||||||||
Sbjct: 26 catcatcatcatcatcgtcgtc 5
>RF01059;mir-598;AC171131.2/69315-69423 6412:Helobdella robusta
Length = 109
Score = 44.1 bits (22), Expect = 9e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 acatcatcatcatcatcgtcgtcgtc 34
||||||||||| ||||||||||||||
Sbjct: 74 acatcatcatcctcatcgtcgtcgtc 99
>RF01059;mir-598;ABFJ01000282.1/12485-12558 431895:Monosiga
brevicollis MX1
Length = 74
Score = 44.1 bits (22), Expect = 9e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 10 catcatcatcatcatcgtcgtcgtca 35
|||||||||||||||||| |||||||
Sbjct: 38 catcatcatcatcatcgttgtcgtca 13
>RF01059;mir-598;AAFI02000020.1/228684-228588 352472:Dictyostelium
discoideum AX4
Length = 97
Score = 44.1 bits (22), Expect = 9e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 10 catcatcatcatcatcgtcgtcgtca 35
|||||||||||||||| |||||||||
Sbjct: 35 catcatcatcatcatcatcgtcgtca 10
