miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;AP004043.3/15829-15652 39947:Oryza sativa Japonica
Group
Length = 178
Score = 63.9 bits (32), Expect = 7e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 13 ggccatgctctccacaggctttcttgaactgt 44
||||||||||||||||||||||||||||||||
Sbjct: 1 ggccatgctctccacaggctttcttgaactgt 32
Score = 56.0 bits (28), Expect = 2e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 131 cttgttgatggttcaagaaagtccttggaaaccatg 166
||||||||| ||||||||||||||||||||| ||||
Sbjct: 139 cttgttgatagttcaagaaagtccttggaaaacatg 174
>RF00648;MIR396;ABXC01003010.1/105635-105521 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 60.0 bits (30), Expect = 1e-08
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 133 tgttgatggttcaagaaagtccttggaaaccatg 166
||||||||||||||||||||||||||||| ||||
Sbjct: 78 tgttgatggttcaagaaagtccttggaaaacatg 111
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 13 ggccatgctctccacaggctttcttgaactgt 44
||||||| ||||||||||||||||||||||||
Sbjct: 1 ggccatgttctccacaggctttcttgaactgt 32
>RF00648;MIR396;AL732351.2/3841-4022 4530:Oryza sativa (rice)
Length = 182
Score = 56.0 bits (28), Expect = 2e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 133 tgttgatggttcaagaaagtccttggaaaccatgcc 168
||||||||||||||||||| || |||||||||||||
Sbjct: 145 tgttgatggttcaagaaagcccatggaaaccatgcc 180
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 16 catgctctccacaggctttcttgaactgt 44
|||||| ||||||||||||||||||||||
Sbjct: 4 catgctttccacaggctttcttgaactgt 32
>RF00648;MIR396;EU950590.1/116-359 4577:Zea mays
Length = 244
Score = 54.0 bits (27), Expect = 7e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 133 tgttgatggttcaagaaagtccttggaaaccatgc 167
||||||||||||||||||| || ||||||||||||
Sbjct: 207 tgttgatggttcaagaaagcccatggaaaccatgc 241
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 16 catgctctccacaggctttcttgaactgt 44
|||||| ||||||||||||||||||||||
Sbjct: 4 catgctttccacaggctttcttgaactgt 32
>RF00648;MIR396;ABXC01004473.1/64146-64350 4558:Sorghum bicolor
(sorghum)
Length = 205
Score = 54.0 bits (27), Expect = 7e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 133 tgttgatggttcaagaaagtccttggaaaccatgc 167
||||||||||||||||||| || ||||||||||||
Sbjct: 168 tgttgatggttcaagaaagcccatggaaaccatgc 202
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 16 catgctctccacaggctttcttgaactgt 44
|||||| ||||||||||||||||||||||
Sbjct: 4 catgctttccacaggctttcttgaactgt 32
>RF00648;MIR396;AC226038.1/95545-95657 4641:Musa acuminata
Length = 113
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 16 catgctctccacaggctttcttgaactgt 44
|||| ||||||||||||||||||||||||
Sbjct: 4 catgttctccacaggctttcttgaactgt 32
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 141 gttcaagaaagtccttggaaaccatg 166
||||||||||||||||||||| ||||
Sbjct: 84 gttcaagaaagtccttggaaaacatg 109
