miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica Group
Length = 187
Score = 105 bits (53), Expect = 2e-22
Identities = 116/135 (85%), Gaps = 4/135 (2%)
Strand = Plus / Plus
Query: 56 cagctgctcgttcatggttcccactatcctatctccatagaaaacgaggagagaggcctg 115
|||||||| |||||||||||||||||| ||||||| |||| ||| ||| | |||| ||
Sbjct: 53 cagctgcttgttcatggttcccactattctatctc-ataggaaaagag---ataggcttg 108
Query: 116 tggtttgcatgaccgaggagccgcttcgatccctcgctgaccgctgtttggattgaaggg 175
|||||||||||||| |||||||| || | ||| ||||||| || ||||||||||||||
Sbjct: 109 tggtttgcatgaccaaggagccgaatcaactccttgctgaccactctttggattgaaggg 168
Query: 176 agctctgcatcttga 190
|||||||||||||||
Sbjct: 169 agctctgcatcttga 183
>RF00638;MIR159;EU955086.1/295-527 4577:Zea mays
Length = 233
Score = 89.7 bits (45), Expect = 1e-17
Identities = 74/81 (91%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 11 ggagctcctatcattccaatgaagggtc-taccggaagggtttgtgcagctgctcgttca 69
|||||||||||||||||||||||||||| ||||| ||||| || | ||||||||||||
Sbjct: 12 ggagctcctatcattccaatgaagggtcgtaccg-aagggccggttccgctgctcgttca 70
Query: 70 tggttcccactatcctatctc 90
|||||||||||||||||||||
Sbjct: 71 tggttcccactatcctatctc 91
Score = 85.7 bits (43), Expect = 2e-16
Identities = 73/83 (87%)
Strand = Plus / Plus
Query: 104 gagagaggcctgtggtttgcatgaccgaggagccgcttcgatccctcgctgaccgctgtt 163
|||| |||| ||||||||||||||||||||||| || || |||| |||| ||||| ||
Sbjct: 143 gagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctggccgctctt 202
Query: 164 tggattgaagggagctctgcatc 186
|||||||||||||||||||||||
Sbjct: 203 tggattgaagggagctctgcatc 225
>RF00638;MIR159;EU947090.1/674-895 4577:Zea mays
Length = 222
Score = 89.7 bits (45), Expect = 1e-17
Identities = 70/77 (90%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 114 tgtggtttgcatgaccgaggagccgcttcgatccct-cgctgaccgctgtttggattgaa 172
||||||||||||||||||||||| || ||| |||| || ||||||||||||||| ||||
Sbjct: 141 tgtggtttgcatgaccgaggagctgcctcgtccccttcgttgaccgctgtttggagtgaa 200
Query: 173 gggagctctgcatcttg 189
|||||||||||||||||
Sbjct: 201 gggagctctgcatcttg 217
Score = 54.0 bits (27), Expect = 7e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 56 cagctgctcgttcatggttcccactatcctatctc 90
||||||||||||||||||||||||| ||| |||||
Sbjct: 56 cagctgctcgttcatggttcccactgtcccatctc 90
>RF00638;MIR159;ABXC01001787.1/21430-21187 4558:Sorghum bicolor
(sorghum)
Length = 244
Score = 85.7 bits (43), Expect = 2e-16
Identities = 73/83 (87%)
Strand = Plus / Plus
Query: 104 gagagaggcctgtggtttgcatgaccgaggagccgcttcgatccctcgctgaccgctgtt 163
|||| |||| ||||||||||||||||||||||| || || |||| |||| ||||| ||
Sbjct: 154 gagataggcttgtggtttgcatgaccgaggagctgcaccgtccccttgctggccgctctt 213
Query: 164 tggattgaagggagctctgcatc 186
|||||||||||||||||||||||
Sbjct: 214 tggattgaagggagctctgcatc 236
Score = 65.9 bits (33), Expect = 2e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 58 gctgctcgttcatggttcccactatcctatctc 90
|||||||||||||||||||||||||||||||||
Sbjct: 58 gctgctcgttcatggttcccactatcctatctc 90
>RF00638;MIR159;ABXC01001787.1/15180-14953 4558:Sorghum bicolor
(sorghum)
Length = 228
Score = 63.9 bits (32), Expect = 7e-10
Identities = 69/80 (86%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 110 ggcctgtggtttgcatgaccgaggagccgcttcgatccc-tcgctgaccgctgtttggat 168
||||||||||||||||||||||||||| || ||| ||| | | ||||||| ||||||
Sbjct: 143 ggcctgtggtttgcatgaccgaggagctgcatcgtcccctttgtcgaccgctcgttggat 202
Query: 169 tgaagggagctctgcatctt 188
||||||||||||||| ||||
Sbjct: 203 tgaagggagctctgcgtctt 222
Score = 60.0 bits (30), Expect = 1e-08
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 57 agctgctcgttcatggttcccactatcctatctc 90
|||||||||||||||||||||||||||| |||||
Sbjct: 57 agctgctcgttcatggttcccactatcccatctc 90
>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
Japonica Group
Length = 274
Score = 54.0 bits (27), Expect = 7e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 162 tttggattgaagggagctctgcatctt 188
|||||||||||||||||||||||||||
Sbjct: 242 tttggattgaagggagctctgcatctt 268
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 160 tgtttggattgaagggagctctgcatct 187
|||||||||||||||||||||| |||||
Sbjct: 160 tgtttggattgaagggagctctacatct 187
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 162 tttggattgaagggagctctgcatctt 188
|||||||||||||||||||| ||||||
Sbjct: 172 tttggattgaagggagctctacatctt 198
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 160 tgtttggattgaagggagctct 181
||||||||||||||||||||||
Sbjct: 160 tgtttggattgaagggagctct 181
>RF00638;MIR159;AC034107.5/26716-26923 3702:Arabidopsis thaliana
(thale cress)
Length = 208
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 162 tttggattgaagggagctctgcatct 187
|||||||||||||||||||| |||||
Sbjct: 176 tttggattgaagggagctcttcatct 201
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 160 tgtttggattgaagggagctct 181
||||||||||||||||||||||
Sbjct: 160 tgtttggattgaagggagctct 181
