miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY821733.1/621-487 4568:Triticum monococcum
Length = 135
Score = 167 bits (84), Expect = 6e-41
Identities = 117/128 (91%)
Strand = Plus / Minus
Query: 23 tactccctgcgtcccaaaattcttgtcttatatttgtctagatacggatgtatctaataa 82
|||| ||| ||| ||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 131 tacttcctccgttccaaaattcttgtcttagatttgcctagatacggatgtatctaatac 72
Query: 83 taaaatgtgacttgatacattcgtatttagacaaatctacgacaaaaattttgggacaga 142
||||| |||||||||||||| |||||||||||||||||| ||||| ||||||||||| ||
Sbjct: 71 taaaacgtgacttgatacatccgtatttagacaaatctaagacaagaattttgggacgga 12
Query: 143 gggagtac 150
||||||||
Sbjct: 11 gggagtac 4
Score = 83.8 bits (42), Expect = 7e-16
Identities = 51/54 (94%)
Strand = Plus / Plus
Query: 23 tactccctgcgtcccaaaattcttgtcttatatttgtctagatacggatgtatc 76
|||||||| ||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 5 tactccctccgtcccaaaattcttgtcttagatttgtctaaatacggatgtatc 58
>RF00906;MIR1122;AM932686.1/57613-57747 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 163 bits (82), Expect = 1e-39
Identities = 118/130 (90%)
Strand = Plus / Minus
Query: 23 tactccctgcgtcccaaaattcttgtcttatatttgtctagatacggatgtatctaataa 82
|||||||| |||||||| ||||||||||| |||||||||||||| |||||||||||||
Sbjct: 131 tactccctctgtcccaaatttcttgtcttagatttgtctagatacagatgtatctaatac 72
Query: 83 taaaatgtgacttgatacattcgtatttagacaaatctacgacaaaaattttgggacaga 142
||||||||||||||||||| ||||| |||||||||||| ||||| ||||||||||| ||
Sbjct: 71 gaaaatgtgacttgatacatccgtatctagacaaatctaagacaagaattttgggaccga 12
Query: 143 gggagtactt 152
||||||||||
Sbjct: 11 gggagtactt 2
Score = 85.7 bits (43), Expect = 2e-16
Identities = 106/127 (83%)
Strand = Plus / Plus
Query: 23 tactccctgcgtcccaaaattcttgtcttatatttgtctagatacggatgtatctaataa 82
|||||||| |||||||||||||||||||| ||||||||||||||||||||||| | | |
Sbjct: 5 tactccctcggtcccaaaattcttgtcttagatttgtctagatacggatgtatcaagtca 64
Query: 83 taaaatgtgacttgatacattcgtatttagacaaatctacgacaaaaattttgggacaga 142
| | | | ||||||| |||| |||||||||||| ||||| || |||||||||||
Sbjct: 65 cattttcgtattagatacatctgtatctagacaaatctaagacaagaaatttgggacaga 124
Query: 143 gggagta 149
|||||||
Sbjct: 125 gggagta 131
>RF00906;MIR1122;FJ374610.1/683-817 4568:Triticum monococcum
Length = 135
Score = 157 bits (79), Expect = 6e-38
Identities = 115/127 (90%)
Strand = Plus / Minus
Query: 23 tactccctgcgtcccaaaattcttgtcttatatttgtctagatacggatgtatctaataa 82
|||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 131 tactccctccgtcccaaaattcttgtcttagatttgtctagatatggatgtatctaatac 72
Query: 83 taaaatgtgacttgatacattcgtatttagacaaatctacgacaaaaattttgggacaga 142
||||| |||| ||||||||| | |||||||| ||||||| ||||| ||||||||||||||
Sbjct: 71 taaaacgtgagttgatacatccctatttagaaaaatctaagacaagaattttgggacaga 12
Query: 143 gggagta 149
||||||
Sbjct: 11 aggagta 5
Score = 60.0 bits (30), Expect = 1e-08
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 96 gatacattcgtatttagacaaatctacgacaaaaattttgggacagagggagta 149
||||||| | ||| |||||||||||| ||||| ||||||||||| |||||||||
Sbjct: 78 gatacatccatatctagacaaatctaagacaagaattttgggacggagggagta 131
Score = 56.0 bits (28), Expect = 2e-07
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 33 gtcccaaaattcttgtcttatatttgtctagatacggatgtatc 76
|||||||||||||||||||| |||| |||| ||| |||||||||
Sbjct: 15 gtcccaaaattcttgtcttagatttttctaaatagggatgtatc 58
>RF00906;MIR1122;EU660895.1/53244-53110 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 141 bits (71), Expect = 4e-33
Identities = 113/127 (88%)
Strand = Plus / Plus
Query: 23 tactccctgcgtcccaaaattcttgtcttatatttgtctagatacggatgtatctaataa 82
|||||||| |||| |||||||||||||||| |||||||||||||| |||||| |||||
Sbjct: 5 tactccctccgtctcaaaattcttgtcttacatttgtctagatacatatgtatttaatac 64
Query: 83 taaaatgtgacttgatacattcgtatttagacaaatctacgacaaaaattttgggacaga 142
|||||| |||||| |||||| |||||||||||||||||| ||||| |||||||||| ||
Sbjct: 65 taaaatatgacttcatacatccgtatttagacaaatctaagacaagaattttgggatgga 124
Query: 143 gggagta 149
|||||||
Sbjct: 125 gggagta 131
Score = 73.8 bits (37), Expect = 7e-13
Identities = 49/53 (92%)
Strand = Plus / Minus
Query: 23 tactccctgcgtcccaaaattcttgtcttatatttgtctagatacggatgtat 75
|||||||| | ||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 131 tactccctccatcccaaaattcttgtcttagatttgtctaaatacggatgtat 79
>RF00906;MIR1122;EU660901.1/93085-92951 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 129 bits (65), Expect = 1e-29
Identities = 113/129 (87%)
Strand = Plus / Minus
Query: 23 tactccctgcgtcccaaaattcttgtcttatatttgtctagatacggatgtatctaataa 82
|||||||| ||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 131 tactccctccgtcccaaaattcttgttgtagctttgtctagatacggatgtatctaatac 72
Query: 83 taaaatgtgacttgatacattcgtatttagacaaatctacgacaaaaattttgggacaga 142
|||| |||||||||||||||||| ||||||||||| || ||||| ||||| |||| ||
Sbjct: 71 aaaaacgtgacttgatacattcgtctttagacaaatttaagacaagaatttcaggacgga 12
Query: 143 gggagtact 151
| |||||||
Sbjct: 11 gcgagtact 3
Score = 61.9 bits (31), Expect = 3e-09
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 96 gatacattcgtatttagacaaatctacgacaaaaattttgggacagagggagtac 150
||||||| ||||| |||||||| |||| |||| ||||||||||| ||||||||||
Sbjct: 78 gatacatccgtatctagacaaagctacaacaagaattttgggacggagggagtac 132
Score = 44.1 bits (22), Expect = 6e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 39 aaattcttgtcttatatttgtctagatacggatgtatc 76
|||||||||||||| ||||||||| | ||| |||||||
Sbjct: 21 aaattcttgtcttaaatttgtctaaagacgaatgtatc 58
>RF00906;MIR1122;AY485644.1/84291-84425 4568:Triticum monococcum
Length = 135
Score = 129 bits (65), Expect = 1e-29
Identities = 104/117 (88%)
Strand = Plus / Minus
Query: 34 tcccaaaattcttgtcttatatttgtctagatacggatgtatctaataataaaatgtgac 93
||||||||||||||||||| |||||| ||||||||||||||||||| | |||||||| ||
Sbjct: 120 tcccaaaattcttgtcttacatttgtttagatacggatgtatctaacactaaaatgtaac 61
Query: 94 ttgatacattcgtatttagacaaatctacgacaaaaattttgggacagagggagtac 150
| |||||| | ||||||||||||| || ||||| ||||||||||| ||||||||||
Sbjct: 60 tacatacatccatatttagacaaatttaagacaacaattttgggacggagggagtac 4
Score = 65.9 bits (33), Expect = 2e-10
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 23 tactccctgcgtcccaaaattcttgtcttatatttgtctagatacggatgtat 75
|||||||| |||||||||||| |||||||| ||||||||| ||| ||||||||
Sbjct: 5 tactccctccgtcccaaaattgttgtcttaaatttgtctaaatatggatgtat 57
>RF00906;MIR1122;AF277239.1/1056-1190 37679:Heteranthelium piliferum
Length = 135
Score = 127 bits (64), Expect = 5e-29
Identities = 111/127 (87%)
Strand = Plus / Minus
Query: 23 tactccctgcgtcccaaaattcttgtcttatatttgtctagatacggatgtatctaataa 82
|||||||| |||||||||||||| |||||| |||||| |||||| | |||| ||||| |
Sbjct: 131 tactccctccgtcccaaaattctngtcttagatttgtttagatatgaatgtgtctaacac 72
Query: 83 taaaatgtgacttgatacattcgtatttagacaaatctacgacaaaaattttgggacaga 142
||||| ||||| ||||||| |||||||||||||||||| ||||| ||||||||||| ||
Sbjct: 71 taaaacatgactagatacatccgtatttagacaaatctatgacaagaattttgggacgga 12
Query: 143 gggagta 149
|||||||
Sbjct: 11 gggagta 5
Score = 79.8 bits (40), Expect = 1e-14
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 23 tactccctgcgtcccaaaattcttgtcttatatttgtctagatacggatgtatcta 78
|||||||| |||||||||||||||||| || ||||||||| |||||||||||||||
Sbjct: 5 tactccctccgtcccaaaattcttgtcatagatttgtctaaatacggatgtatcta 60
>RF00906;MIR1122;EF540321.1/52965-52831 4571:Triticum turgidum
Length = 135
Score = 121 bits (61), Expect = 3e-27
Identities = 103/117 (88%)
Strand = Plus / Plus
Query: 34 tcccaaaattcttgtcttatatttgtctagatacggatgtatctaataataaaatgtgac 93
||||||||||||||||||| |||||| |||||| ||||||||||| | |||||||| ||
Sbjct: 16 tcccaaaattcttgtcttacatttgtttagataaagatgtatctaacactaaaatgtaac 75
Query: 94 ttgatacattcgtatttagacaaatctacgacaaaaattttgggacagagggagtac 150
| ||||||| ||||||||||||||| || ||||| ||||||||||| ||||| ||||
Sbjct: 76 tagatacatccgtatttagacaaatttaagacaagaattttgggacggagggggtac 132
Score = 79.8 bits (40), Expect = 1e-14
Identities = 49/52 (94%)
Strand = Plus / Minus
Query: 27 ccctgcgtcccaaaattcttgtcttatatttgtctagatacggatgtatcta 78
|||| ||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 127 ccctccgtcccaaaattcttgtcttaaatttgtctaaatacggatgtatcta 76
>RF00906;MIR1122;DQ145528.1/676-542 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 135
Score = 113 bits (57), Expect = 8e-25
Identities = 110/125 (88%), Gaps = 2/125 (1%)
Strand = Plus / Minus
Query: 23 tactccctgcgtcccaaaattcttgtcttatatttgtctagatacggatgtatctaa-ta 81
||||| || ||||||||||||||||||||| ||| ||||||| | |||||||||||| ||
Sbjct: 131 tactctctccgtcccaaaattcttgtcttaaatt-gtctagaaatggatgtatctaaata 73
Query: 82 ataaaatgtgacttgatacattcgtatttagacaaatctacgacaaaaattttgggacag 141
||||| ||||| ||||||||| |||||||||||||||| ||||| ||||||||||||
Sbjct: 72 ctaaaacatgactagatacattcatatttagacaaatctaagacaagaattttgggacaa 13
Query: 142 aggga 146
|||||
Sbjct: 12 aggga 8
Score = 60.0 bits (30), Expect = 1e-08
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 33 gtcccaaaattcttgtcttatatttgtctagatacggatgtatcta 78
|||||||||||||||||||| ||||||||| ||| | |||||||||
Sbjct: 15 gtcccaaaattcttgtcttagatttgtctaaatatgaatgtatcta 60
>RF00906;MIR1122;AF427791.1/222786-222921 4513:Hordeum vulgare
Length = 136
Score = 107 bits (54), Expect = 5e-23
Identities = 112/130 (86%), Gaps = 1/130 (0%)
Strand = Plus / Minus
Query: 23 tactccctgcgtcccaaaattcttgtcttatatttgtctagatacggatgtatctaataa 82
|||||||| ||||||||||||||||||||| ||||| |||| | |||||||||||| |
Sbjct: 132 tactcccttcgtcccaaaattcttgtcttaactttgtttagaaatagatgtatctaatta 73
Query: 83 -taaaatgtgacttgatacattcgtatttagacaaatctacgacaaaaattttgggacag 141
||||| ||||| ||||||||| ||| || ||||||||| ||||| ||||||||||| |
Sbjct: 72 ctaaaacttgactagatacattcatatctaaacaaatctaagacaataattttgggacgg 13
Query: 142 agggagtact 151
||||||||||
Sbjct: 12 agggagtact 3
Score = 63.9 bits (32), Expect = 7e-10
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 23 tactccctgcgtcccaaaattcttgtcttatatttgtctagatacggatgtatcta 78
|||||||| |||||||||||| |||||||| |||||| |||||| | |||||||||
Sbjct: 5 tactccctccgtcccaaaattattgtcttagatttgtttagatatgaatgtatcta 60
>RF00906;MIR1122;AJ704455.1/466-601 4513:Hordeum vulgare
Length = 136
Score = 103 bits (52), Expect = 8e-22
Identities = 110/128 (85%), Gaps = 1/128 (0%)
Strand = Plus / Minus
Query: 23 tactccctgcgtcccaaaattcttgtcttatatttgtctagatacggatgtatctaa-ta 81
|||||||| ||||||||||||||||||||| ||||| |||| | |||||||| || ||
Sbjct: 132 tactccctccgtcccaaaattcttgtcttaagtttgtttagaaatagatgtatcaaaata 73
Query: 82 ataaaatgtgacttgatacattcgtatttagacaaatctacgacaaaaattttgggacag 141
||||| |||||| ||||||||| ||| ||||||||| || ||||| ||||||||||| |
Sbjct: 72 ctaaaacgtgactagatacattcatatctagacaaatgtaagacaagaattttgggacgg 13
Query: 142 agggagta 149
||||||||
Sbjct: 12 agggagta 5
Score = 79.8 bits (40), Expect = 1e-14
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 23 tactccctgcgtcccaaaattcttgtcttatatttgtctagatacggatgtatcta 78
|||||||| ||||||||||||||||||||| ||||||||||||| | |||||||||
Sbjct: 5 tactccctccgtcccaaaattcttgtcttacatttgtctagatatgaatgtatcta 60
>RF00906;MIR1122;AY853252.1/217307-217173 4513:Hordeum vulgare
Length = 135
Score = 93.7 bits (47), Expect = 7e-19
Identities = 107/127 (84%)
Strand = Plus / Minus
Query: 23 tactccctgcgtcccaaaattcttgtcttatatttgtctagatacggatgtatctaataa 82
|||| ||| ||||||||||||||||||| |||| ||||||||||||||||||||| |
Sbjct: 131 tactacctccgtcccaaaattcttgtctaggatttatctagatacggatgtatctaacac 72
Query: 83 taaaatgtgacttgatacattcgtatttagacaaatctacgacaaaaattttgggacaga 142
||||| |||||| ||||||| | |||||||| |||| || ||| | ||||||| || ||
Sbjct: 71 taaaacgtgactagatacatccatatttagagaaatttaagaccagaattttgagatgga 12
Query: 143 gggagta 149
|||||||
Sbjct: 11 gggagta 5
Score = 48.1 bits (24), Expect = 4e-05
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 23 tactccctgcgtcccaaaattcttgtcttatatttgtctagatacggatgtatcta 78
|||||||| | || ||||||||| |||||| |||| |||| ||| |||||||||||
Sbjct: 5 tactccctccatctcaaaattctggtcttaaatttctctaaatatggatgtatcta 60
>RF00906;MIR1122;DQ890018.1/183-48 77009:Hordeum vulgare subsp.
spontaneum
Length = 136
Score = 87.7 bits (44), Expect = 5e-17
Identities = 108/128 (84%), Gaps = 1/128 (0%)
Strand = Plus / Minus
Query: 23 tactccctgcgtcccaaaattcttgtcttatatttgtctagatacggatgtatct-aata 81
|||||||| ||||| ||||||||||||||| |||||||||| | ||||||||| ||||
Sbjct: 132 tactccctccgtcctaaaattcttgtcttagctttgtctagaaattgatgtatctaaata 73
Query: 82 ataaaatgtgacttgatacattcgtatttagacaaatctacgacaaaaattttgggacag 141
||||| | ||| ||||||||| ||| || ||||||||| ||||| |||||||| || |
Sbjct: 72 ctaaaacttaactagatacattcatatctaaacaaatctaagacaagaattttggaacgg 13
Query: 142 agggagta 149
||||||||
Sbjct: 12 agggagta 5
Score = 63.9 bits (32), Expect = 7e-10
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 23 tactccctgcgtcccaaaattcttgtcttatatttgtctagatacggatgtatcta 78
|||||||| ||| ||||||||||||||||| |||||| |||||| | |||||||||
Sbjct: 5 tactccctccgttccaaaattcttgtcttagatttgtttagatatgaatgtatcta 60
>RF00906;MIR1122;AF254799.1/46723-46588 4513:Hordeum vulgare
Length = 136
Score = 83.8 bits (42), Expect = 7e-16
Identities = 109/130 (83%), Gaps = 1/130 (0%)
Strand = Plus / Minus
Query: 23 tactccctgcgtcccaaaattcttgtcttatatttgtctagatacggatgtatctaa-ta 81
|||||||| ||| ||||||||||||||||| ||||||| | | |||||||||||| ||
Sbjct: 132 tactccctccgttccaaaattcttgtcttagcattgtctacacatggatgtatctaaata 73
Query: 82 ataaaatgtgacttgatacattcgtatttagacaaatctacgacaaaaattttgggacag 141
|||| ||||| ||||||||| ||| ||||||||| || ||||| ||||||||||| |
Sbjct: 72 ctaaaccatgactagatacattcatatatagacaaatttaagacaagaattttgggacgg 13
Query: 142 agggagtact 151
| ||||||||
Sbjct: 12 aaggagtact 3
Score = 63.9 bits (32), Expect = 7e-10
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 23 tactccctgcgtcccaaaattcttgtcttatatttgtctagatacggatgtatcta 78
|||||| | ||||||||||||||||||||| ||||||||| ||| | |||||||||
Sbjct: 5 tactccttccgtcccaaaattcttgtcttaaatttgtctatatatgaatgtatcta 60
>RF00906;MIR1122;AY853252.1/33762-33628 4513:Hordeum vulgare
Length = 135
Score = 83.8 bits (42), Expect = 7e-16
Identities = 108/130 (83%)
Strand = Plus / Minus
Query: 23 tactccctgcgtcccaaaattcttgtcttatatttgtctagatacggatgtatctaataa 82
|||||||| | | ||||||||||||||||| |||||||||| |||||||||||| |
Sbjct: 131 tactccctccattccaaaattcttgtcttagctttgtctagaactggatgtatctaaata 72
Query: 83 taaaatgtgacttgatacattcgtatttagacaaatctacgacaaaaattttgggacaga 142
|||| ||||| ||||||||||||| || |||||| || | ||| ||||||| ||| ||
Sbjct: 71 ctaaatttgactagatacattcgtatctaaacaaatataaggcaagaattttgagacgga 12
Query: 143 gggagtactt 152
||||||||||
Sbjct: 11 gggagtactt 2
Score = 71.9 bits (36), Expect = 3e-12
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 23 tactccctgcgtcccaaaattcttgtcttatatttgtctagatacggatgtatcta 78
|||||||| |||| ||||||||||| ||||||||||| |||||||| |||||||||
Sbjct: 5 tactccctccgtctcaaaattcttgccttatatttgtttagatacgaatgtatcta 60
>RF00906;MIR1122;DQ890004.1/48-183 4513:Hordeum vulgare
Length = 136
Score = 79.8 bits (40), Expect = 1e-14
Identities = 107/128 (83%), Gaps = 1/128 (0%)
Strand = Plus / Plus
Query: 23 tactccctgcgtcccaaaattcttgtcttatatttgtctagatacggatgtatct-aata 81
|||||||| ||||| ||||||||||||||| |||||||||| | ||||||||| ||||
Sbjct: 5 tactccctccgtcctaaaattcttgtcttagctttgtctagaaattgatgtatctaaata 64
Query: 82 ataaaatgtgacttgatacattcgtatttagacaaatctacgacaaaaattttgggacag 141
||||| | ||| ||||||||| ||| || ||||||||| ||||| |||||||| || |
Sbjct: 65 ctaaaacttaactagatacattcatatctaaacaaatctaagacaagaattttggaacgg 124
Query: 142 agggagta 149
||| ||||
Sbjct: 125 aggtagta 132
Score = 56.0 bits (28), Expect = 2e-07
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 23 tactccctgcgtcccaaaattcttgtcttatatttgtctagatacggatgtatcta 78
|||| ||| ||| ||||||||||||||||| |||||| |||||| | |||||||||
Sbjct: 132 tactacctccgttccaaaattcttgtcttagatttgtttagatatgaatgtatcta 77
>RF00906;MIR1122;AF459639.1/191055-190921 4568:Triticum monococcum
Length = 135
Score = 73.8 bits (37), Expect = 7e-13
Identities = 106/129 (82%)
Strand = Plus / Plus
Query: 21 attactccctgcgtcccaaaattcttgtcttatatttgtctagatacggatgtatctaat 80
|||||||||| ||| || || | ||||||||| ||||||||||||||||| ||||||
Sbjct: 3 attactccctccgttccgaattacttgtcttagatttgtctagatacggagatatctagc 62
Query: 81 aataaaatgtgacttgatacattcgtatttagacaaatctacgacaaaaattttgggaca 140
| ||||||| | || ||||||| ||||| |||||||||| | ||||| | ||||| ||
Sbjct: 63 actaaaatgagtctagatacatccgtatctagacaaatccaagacaagtaatttggaacg 122
Query: 141 gagggagta 149
|||||||||
Sbjct: 123 gagggagta 131
Score = 63.9 bits (32), Expect = 7e-10
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 23 tactccctgcgtcccaaaattcttgtcttatatttgtctagatacggatgtatcta 78
|||||||| ||| ||||| | |||||||| |||||||||||||||||||||||||
Sbjct: 131 tactccctccgttccaaattacttgtcttggatttgtctagatacggatgtatcta 76
>RF00906;MIR1122;AY887089.1/1801-1936 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 136
Score = 71.9 bits (36), Expect = 3e-12
Identities = 106/128 (82%), Gaps = 1/128 (0%)
Strand = Plus / Minus
Query: 23 tactccctgcgtcccaaaattcttgtcttatatttgtctagatacggatgtatct-aata 81
|||||||| ||||||||||||||||||||| || | | |||||| ||||| || | ||||
Sbjct: 132 tactccctccgtcccaaaattcttgtcttagatgtttttagatatggatgcatttaaata 73
Query: 82 ataaaatgtgacttgatacattcgtatttagacaaatctacgacaaaaattttgggacag 141
|||||||| ||| ||||||| | ||| ||||||||| | |||| ||||||| ||| |
Sbjct: 72 ctaaaatgtaactagatacatccatatctagacaaattcaaaacaataattttgagacgg 13
Query: 142 agggagta 149
||||||||
Sbjct: 12 agggagta 5
Score = 61.9 bits (31), Expect = 3e-09
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 20 tattactccctgcgtcccaaaattcttgtcttatatttgtctagatacggatgtatcta 78
||||||||||| |||| ||||||| |||| || ||||||||||||| |||||||||||
Sbjct: 2 tattactccctccgtctcaaaattattgttttgaatttgtctagatatggatgtatcta 60
>RF00906;MIR1122;EU096089.1/14944-15085 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 142
Score = 69.9 bits (35), Expect = 1e-11
Identities = 110/134 (82%), Gaps = 7/134 (5%)
Strand = Plus / Minus
Query: 23 tactccctgcgtcccaaaattcttgtcttatatttgtctagatacggatgta------tc 76
|||||||| ||||||||||||||||||||| |||||||| | | ||||||| ||
Sbjct: 138 tactccctccgtcccaaaattcttgtcttaggtttgtctataaatggatgtaggtgtatc 79
Query: 77 taa-taataaaatgtgacttgatacattcgtatttagacaaatctacgacaaaaattttg 135
||| || |||| |||||| |||||||| ||| |||||||||||| ||||| || ||||
Sbjct: 78 taaataccaaaacgtgactacatacattcatatctagacaaatctaagacaagaagtttg 19
Query: 136 ggacagagggagta 149
|||| |||||||||
Sbjct: 18 ggacggagggagta 5
Score = 65.9 bits (33), Expect = 2e-10
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 23 tactccctgcgtcccaaaattcttgtcttatatttgtctagatacggatgtat 75
|||||||| ||||||||| ||||||||||| ||||||||||||| | ||||||
Sbjct: 5 tactccctccgtcccaaacttcttgtcttagatttgtctagatatgaatgtat 57
Score = 48.1 bits (24), Expect = 4e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 110 tagacaaatctacgacaaaaattttgggacagagggagta 149
|||||||| ||| ||||| ||||||||||| |||||||||
Sbjct: 99 tagacaaacctaagacaagaattttgggacggagggagta 138
>RF00906;MIR1122;EU626553.1/30213-30109 4572:Triticum urartu
Length = 105
Score = 63.9 bits (32), Expect = 7e-10
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 23 tactccctgcgtcccaaaattcttgtcttatatttgtctagatacgga 70
|||||||| ||||||||||||||||||||| |||| | ||||||||||
Sbjct: 101 tactccctccgtcccaaaattcttgtcttagatttatttagatacgga 54
Score = 60.0 bits (30), Expect = 1e-08
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 36 ccaaaattcttgtcttatatttgtctagatacggatgt 73
||||||||||||||||| |||| |||||||||||||||
Sbjct: 17 ccaaaattcttgtcttagatttatctagatacggatgt 54
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 115 aaatctacgacaaaaattttgggacagagggagta 149
||||||| ||||| ||||||||||| |||||||||
Sbjct: 67 aaatctaagacaagaattttgggacggagggagta 101
>RF00906;MIR1122;AP009567.1/9225-9090 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 136
Score = 63.9 bits (32), Expect = 7e-10
Identities = 105/128 (82%), Gaps = 1/128 (0%)
Strand = Plus / Minus
Query: 23 tactccctgcgtcccaaaattcttgtcttatatttgtctagatacggatgtatctaataa 82
|||||||| |||| |||| |||||||||| |||||||| | | || |||||||||
Sbjct: 132 tactccctccgtcttaaaaatcttgtcttaggtttgtctaaaaatggttgtatctaaatg 73
Query: 83 t-aaaatgtgacttgatacattcgtatttagacaaatctacgacaaaaattttgggacag 141
| |||| |||| | ||||||||| ||| |||||||||||| ||||| |||||| |||||
Sbjct: 72 tcaaaacgtgattagatacattcatatctagacaaatctaagacaagaattttatgacag 13
Query: 142 agggagta 149
||||||||
Sbjct: 12 agggagta 5
Score = 61.9 bits (31), Expect = 3e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 38 aaaattcttgtcttatatttgtctagatacggatgtatctaat 80
||||||||||||||| ||||||||||||| | |||||||||||
Sbjct: 20 aaaattcttgtcttagatttgtctagatatgaatgtatctaat 62
>RF00906;MIR1122;DJ023121.1/176-54 4513:Hordeum vulgare
Length = 123
Score = 63.9 bits (32), Expect = 7e-10
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 23 tactccctgcgtcccaaaattcttgtcttatatttgtctagata 66
|||||||| ||||| ||||||||||||||| |||||||||||||
Sbjct: 5 tactccctccgtcctaaaattcttgtcttagatttgtctagata 48
Score = 50.1 bits (25), Expect = 1e-05
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 101 attcgtatttagacaaatctacgacaaaaattttgggacagagggagta 149
|||| ||| |||||||||||| ||||| |||||| |||| |||||||||
Sbjct: 53 attcatatctagacaaatctaagacaagaattttaggacggagggagta 5
>RF00906;MIR1122;EU862588.1/607-710 4516:Hordeum bulbosum
Length = 104
Score = 63.9 bits (32), Expect = 7e-10
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 32 cgtcccaaaattcttgtcttatatttgtctagatacggatgtatctaa 79
|||||||||| ||||||||| |||| |||||||||||||||||||||
Sbjct: 91 cgtcccaaaaagcttgtcttagatttatctagatacggatgtatctaa 44
>RF00906;MIR1122;DQ123819.1/2832-2966 4571:Triticum turgidum
Length = 135
Score = 61.9 bits (31), Expect = 3e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 44 cttgtcttatatttgtctagatacggatgtatcta 78
||||||||| |||||||||||||||||||||||||
Sbjct: 26 cttgtcttaaatttgtctagatacggatgtatcta 60
Score = 58.0 bits (29), Expect = 4e-08
Identities = 86/105 (81%)
Strand = Plus / Minus
Query: 23 tactccctgcgtcccaaaattcttgtcttatatttgtctagatacggatgtatctaataa 82
|||||||| ||| ||||| | |||||||| |||||||||||||| ||| | |||| |
Sbjct: 131 tactccctccgttccaaattacttgtcttcgatttgtctagatacagatatgtctagcac 72
Query: 83 taaaatgtgacttgatacattcgtatttagacaaatctacgacaa 127
||||||| | || ||||||| ||||| ||||||||| || |||||
Sbjct: 71 taaaatgagtctagatacatccgtatctagacaaatttaagacaa 27
>RF00906;MIR1122;X73528.1/281-181 4565:Triticum aestivum (bread
wheat)
Length = 101
Score = 56.0 bits (28), Expect = 2e-07
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 23 tactccctgcgtcccaaaattcttgtcttatatttgtctagata 66
|||||||| ||| ||||||||||||||||| |||||||| ||||
Sbjct: 5 tactcccttcgttccaaaattcttgtcttagatttgtcttgata 48
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 38 aaaattcttgtcttatatttgtctagatac 67
||||||||||||||| ||||||||||||||
Sbjct: 82 aaaattcttgtcttagatttgtctagatac 53
>RF00906;MIR1122;EU862571.1/695-592 98113:Hordeum murinum subsp.
glaucum
Length = 104
Score = 50.1 bits (25), Expect = 1e-05
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 23 tactccctgcgtcccaaaattcttgtcttatatttgtctagatacggatgtatctaa 79
|||| ||| ||||||| || ||||||| | |||| |||||||||||||||||||||
Sbjct: 5 tactacctccgtcccagaaagcttgtctaagatttatctagatacggatgtatctaa 61
>RF00906;MIR1122;AP008207.1/24395058-24395107 39947:Oryza sativa
Japonica Group
Length = 50
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 130 attttgggacagagggagtactt 152
|||||||||||||||||||||||
Sbjct: 24 attttgggacagagggagtactt 2
>RF00906;MIR1122;FJ394375.1/382-487 4568:Triticum monococcum
Length = 106
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 49 cttatatttgtctagatacggatgtatcta 78
||||||||||||||||||| | ||||||||
Sbjct: 76 cttatatttgtctagatacaggtgtatcta 47
>RF00906;MIR1122;DQ267106.1/62901-62968 4572:Triticum urartu
Length = 68
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 130 attttgggacagagggagtact 151
||||||||||||||||||||||
Sbjct: 45 attttgggacagagggagtact 66
>RF00906;MIR1122;AAAA02014858.1/37527-37621 39946:Oryza sativa
Indica Group
Length = 95
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 130 attttgggacagagggagtact 151
||||||||||||||||||||||
Sbjct: 24 attttgggacagagggagtact 3
>RF00906;MIR1122;AAAA02005900.1/34221-34065 39946:Oryza sativa
Indica Group
Length = 157
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 130 attttgggacagagggagtact 151
||||||||||||||||||||||
Sbjct: 24 attttgggacagagggagtact 3
>RF00906;MIR1122;AAAA02010779.1/26630-26778 39946:Oryza sativa
Indica Group
Length = 149
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 131 ttttgggacagagggagtactt 152
||||||||||||||||||||||
Sbjct: 127 ttttgggacagagggagtactt 148
>RF00906;MIR1122;AACV01002422.1/2768-2895 39947:Oryza sativa
Japonica Group
Length = 128
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 130 attttgggacagagggagtact 151
||||||||||||||||||||||
Sbjct: 24 attttgggacagagggagtact 3
>RF00906;MIR1122;AL512546.2/55731-55825 4530:Oryza sativa (rice)
Length = 95
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 130 attttgggacagagggagtact 151
||||||||||||||||||||||
Sbjct: 24 attttgggacagagggagtact 3
>RF00906;MIR1122;AP004891.4/64233-64389 39947:Oryza sativa Japonica
Group
Length = 157
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 130 attttgggacagagggagtact 151
||||||||||||||||||||||
Sbjct: 24 attttgggacagagggagtact 3
