miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY821733.1/621-487 4568:Triticum monococcum
Length = 135
Score = 151 bits (76), Expect = 3e-36
Identities = 103/112 (91%)
Strand = Plus / Plus
Query: 11 tacttccttcgtcccaaaattcttgttttaaatttgtctaaatacggatgtatcaaatca 70
|||| ||| ||||||||||||||||| ||| ||||||||||||||||||||||||| |||
Sbjct: 5 tactccctccgtcccaaaattcttgtcttagatttgtctaaatacggatgtatcaagtca 64
Query: 71 cgttttagtattagatacatccgcatctagacgaatctaagataagaatttt 122
||||||||||||||||||||||| |||||| | ||||||||| |||||||||
Sbjct: 65 cgttttagtattagatacatccgtatctaggcaaatctaagacaagaatttt 116
Score = 61.9 bits (31), Expect = 2e-09
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 10 atacttccttcgtcccaaaattcttgttttaaatttgtctaaatacggatgtatc 64
||||||||| ||| ||||||||||||| ||| ||||| ||| |||||||||||||
Sbjct: 132 atacttcctccgttccaaaattcttgtcttagatttgcctagatacggatgtatc 78
>RF00906;MIR1122;FJ374610.1/683-817 4568:Triticum monococcum
Length = 135
Score = 137 bits (69), Expect = 5e-32
Identities = 102/113 (90%)
Strand = Plus / Plus
Query: 21 gtcccaaaattcttgttttaaatttgtctaaatacggatgtatcaaatcacgttttagta 80
|||||||||||||||| ||| |||| |||||||| ||||||||||| |||||||||||||
Sbjct: 15 gtcccaaaattcttgtcttagatttttctaaatagggatgtatcaactcacgttttagta 74
Query: 81 ttagatacatccgcatctagacgaatctaagataagaattttaggacgtaggg 133
|||||||||||| |||||||| ||||||||| ||||||||| ||||| ||||
Sbjct: 75 ttagatacatccatatctagacaaatctaagacaagaattttgggacggaggg 127
Score = 61.9 bits (31), Expect = 2e-09
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 10 atacttccttcgtcccaaaattcttgttttaaatttgtctaaatacggatgtatc 64
||||| ||| ||||||||||||||||| ||| ||||||||| ||| |||||||||
Sbjct: 132 atactccctccgtcccaaaattcttgtcttagatttgtctagatatggatgtatc 78
>RF00906;MIR1122;AM932686.1/57613-57747 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 117 bits (59), Expect = 4e-26
Identities = 95/107 (88%)
Strand = Plus / Plus
Query: 21 gtcccaaaattcttgttttaaatttgtctaaatacggatgtatcaaatcacgttttagta 80
|||||||||||||||| ||| ||||||||| ||||||||||||||| |||| |||| |||
Sbjct: 15 gtcccaaaattcttgtcttagatttgtctagatacggatgtatcaagtcacattttcgta 74
Query: 81 ttagatacatccgcatctagacgaatctaagataagaattttaggac 127
||||||||||| | |||||||| ||||||||| ||||| ||| ||||
Sbjct: 75 ttagatacatctgtatctagacaaatctaagacaagaaatttgggac 121
>RF00906;MIR1122;EU660901.1/93085-92951 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 109 bits (55), Expect = 1e-23
Identities = 94/107 (87%)
Strand = Plus / Plus
Query: 27 aaattcttgttttaaatttgtctaaatacggatgtatcaaatcacgttttagtattagat 86
|||||||||| ||||||||||||||| ||| ||||||||| ||||||||| |||||||||
Sbjct: 21 aaattcttgtcttaaatttgtctaaagacgaatgtatcaagtcacgtttttgtattagat 80
Query: 87 acatccgcatctagacgaatctaagataagaattttaggacgtaggg 133
||||||| |||||||| || ||| | ||||||||| ||||| ||||
Sbjct: 81 acatccgtatctagacaaagctacaacaagaattttgggacggaggg 127
Score = 60.0 bits (30), Expect = 9e-09
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 11 tacttccttcgtcccaaaattcttgttttaaatttgtctaaatacggatgtatc 64
|||| ||| |||||||||||||||||| || |||||||| |||||||||||||
Sbjct: 131 tactccctccgtcccaaaattcttgttgtagctttgtctagatacggatgtatc 78
>RF00906;MIR1122;EF540321.1/52965-52831 4571:Triticum turgidum
Length = 135
Score = 101 bits (51), Expect = 3e-21
Identities = 90/103 (87%)
Strand = Plus / Minus
Query: 20 cgtcccaaaattcttgttttaaatttgtctaaatacggatgtatcaaatcacgttttagt 79
||||||||||||||||| ||||||||||||||||||||||||||| | | || |||||||
Sbjct: 122 cgtcccaaaattcttgtcttaaatttgtctaaatacggatgtatctagttacattttagt 63
Query: 80 attagatacatccgcatctagacgaatctaagataagaatttt 122
||||||||||| ||||| || ||| ||||| |||||||||
Sbjct: 62 gttagatacatctttatctaaacaaatgtaagacaagaatttt 20
Score = 50.1 bits (25), Expect = 8e-06
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 82 tagatacatccgcatctagacgaatctaagataagaattttaggacgtagggg 134
|||||||||||| || ||||| ||| ||||| ||||||||| ||||| |||||
Sbjct: 76 tagatacatccgtatttagacaaatttaagacaagaattttgggacggagggg 128
>RF00906;MIR1122;EU660895.1/53244-53110 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 97.6 bits (49), Expect = 4e-20
Identities = 88/101 (87%)
Strand = Plus / Minus
Query: 22 tcccaaaattcttgttttaaatttgtctaaatacggatgtatcaaatcacgttttagtat 81
||||||||||||||| ||| |||||||||||||||||||||| || ||| |||||||||
Sbjct: 120 tcccaaaattcttgtcttagatttgtctaaatacggatgtatgaagtcatattttagtat 61
Query: 82 tagatacatccgcatctagacgaatctaagataagaatttt 122
|| |||||| | |||||||| ||| ||||| |||||||||
Sbjct: 60 taaatacatatgtatctagacaaatgtaagacaagaatttt 20
Score = 44.1 bits (22), Expect = 5e-04
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 10 atacttccttcgtcccaaaattcttgttttaaatttgtctaaatac 55
||||| ||| |||| |||||||||||| ||| ||||||||| ||||
Sbjct: 4 atactccctccgtctcaaaattcttgtcttacatttgtctagatac 49
>RF00906;MIR1122;AF277239.1/1056-1190 37679:Heteranthelium piliferum
Length = 135
Score = 97.6 bits (49), Expect = 4e-20
Identities = 105/124 (84%)
Strand = Plus / Plus
Query: 10 atacttccttcgtcccaaaattcttgttttaaatttgtctaaatacggatgtatcaaatc 69
||||| ||| ||||||||||||||||| || ||||||||||||||||||||||| | ||
Sbjct: 4 atactccctccgtcccaaaattcttgtcatagatttgtctaaatacggatgtatctagtc 63
Query: 70 acgttttagtattagatacatccgcatctagacgaatctaagataagaattttaggacgt 129
| |||||||| ||||| |||| | ||||| || ||||||||| |||||||| |||||
Sbjct: 64 atgttttagtgttagacacattcatatctaaacaaatctaagacnagaattttgggacgg 123
Query: 130 aggg 133
||||
Sbjct: 124 aggg 127
Score = 48.1 bits (24), Expect = 3e-05
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 82 tagatacatccgcatctagacgaatctaagataagaattttaggacgtaggg 133
|||||||||||| || ||||| |||||| || ||||||||| ||||| ||||
Sbjct: 60 tagatacatccgtatttagacaaatctatgacaagaattttgggacggaggg 9
>RF00906;MIR1122;AY485644.1/84291-84425 4568:Triticum monococcum
Length = 135
Score = 95.6 bits (48), Expect = 2e-19
Identities = 96/112 (85%)
Strand = Plus / Plus
Query: 11 tacttccttcgtcccaaaattcttgttttaaatttgtctaaatacggatgtatcaaatca 70
|||| ||| |||||||||||| |||| ||||||||||||||||| |||||||| | | |
Sbjct: 5 tactccctccgtcccaaaattgttgtcttaaatttgtctaaatatggatgtatgtagtta 64
Query: 71 cgttttagtattagatacatccgcatctagacgaatctaagataagaatttt 122
| ||||||| ||||||||||||| ||||| || ||| ||||| |||||||||
Sbjct: 65 cattttagtgttagatacatccgtatctaaacaaatgtaagacaagaatttt 116
Score = 54.0 bits (27), Expect = 5e-07
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 22 tcccaaaattcttgttttaaatttgtctaaatacggatgtatc 64
||||||||||||||| ||| |||||| || |||||||||||||
Sbjct: 120 tcccaaaattcttgtcttacatttgtttagatacggatgtatc 78
>RF00906;MIR1122;AY853252.1/217307-217173 4513:Hordeum vulgare
Length = 135
Score = 95.6 bits (48), Expect = 2e-19
Identities = 90/104 (86%)
Strand = Plus / Plus
Query: 25 caaaattcttgttttaaatttgtctaaatacggatgtatcaaatcacgttttagtattag 84
||||||||| || |||||||| |||||||| ||||||||| | |||||||||||| ||||
Sbjct: 19 caaaattctggtcttaaatttctctaaatatggatgtatctagtcacgttttagtgttag 78
Query: 85 atacatccgcatctagacgaatctaagataagaattttaggacg 128
||||||||| ||||||| |||| ||| ||||||||| |||||
Sbjct: 79 atacatccgtatctagataaatcctagacaagaattttgggacg 122
Score = 44.1 bits (22), Expect = 5e-04
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 11 tacttccttcgtcccaaaattcttgttttaaatttgtctaaatacggatgtatc 64
|||| ||| ||||||||||||||||| | |||| |||| |||||||||||||
Sbjct: 131 tactacctccgtcccaaaattcttgtctaggatttatctagatacggatgtatc 78
>RF00906;MIR1122;DQ145528.1/676-542 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 135
Score = 83.8 bits (42), Expect = 6e-16
Identities = 98/114 (85%), Gaps = 2/114 (1%)
Strand = Plus / Plus
Query: 16 ccttcgtcccaaaattcttgttttaaatttgtctaaatacggatgtatcaaatcacgttt 75
|||| |||||||||||||||| ||| ||||||||||||| | ||||||| | ||| ||||
Sbjct: 10 cctttgtcccaaaattcttgtcttagatttgtctaaatatgaatgtatctagtcatgttt 69
Query: 76 tagta-ttagatacatccgcatctagacgaatctaagataagaattttaggacg 128
||||| |||||||||||| ||||||| ||| ||||| ||||||||| |||||
Sbjct: 70 tagtatttagatacatccatttctagac-aatttaagacaagaattttgggacg 122
>RF00906;MIR1122;AJ704455.1/466-601 4513:Hordeum vulgare
Length = 136
Score = 71.9 bits (36), Expect = 2e-12
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 11 tacttccttcgtcccaaaattcttgttttaaatttgtctaaatacggatgtatcaaatca 70
|||| ||| ||||||||||||||||| ||| ||||||||| ||| | ||||||| | |||
Sbjct: 5 tactccctccgtcccaaaattcttgtcttacatttgtctagatatgaatgtatctagtca 64
Query: 71 cgttttagtatt 82
||||||||||||
Sbjct: 65 cgttttagtatt 76
>RF00906;MIR1122;AF254799.1/46723-46588 4513:Hordeum vulgare
Length = 136
Score = 67.9 bits (34), Expect = 4e-11
Identities = 65/74 (87%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 20 cgtcccaaaattcttgttttaaatttgtctaaatacggatgtatcaaatcacgttttagt 79
||||||||||||||||| ||||||||||||| ||| | ||||||| | ||| | ||||||
Sbjct: 14 cgtcccaaaattcttgtcttaaatttgtctatatatgaatgtatctagtcatggtttagt 73
Query: 80 a-ttagatacatcc 92
| ||||||||||||
Sbjct: 74 atttagatacatcc 87
>RF00906;MIR1122;DQ890018.1/183-48 77009:Hordeum vulgare subsp.
spontaneum
Length = 136
Score = 65.9 bits (33), Expect = 1e-10
Identities = 103/125 (82%), Gaps = 1/125 (0%)
Strand = Plus / Plus
Query: 10 atacttccttcgtcccaaaattcttgttttaaatttgtctaaatacggatgtatcaaatc 69
||||| ||| ||| ||||||||||||| ||| |||||| || ||| | ||||||| | |
Sbjct: 4 atactccctccgttccaaaattcttgtcttagatttgtttagatatgaatgtatctagtt 63
Query: 70 acgttttagtatt-agatacatccgcatctagacgaatctaagataagaattttaggacg 128
| ||||||||||| ||||||||| ||||||| || |||||| |||||||||||||||
Sbjct: 64 aagttttagtatttagatacatcaatttctagacaaagctaagacaagaattttaggacg 123
Query: 129 taggg 133
||||
Sbjct: 124 gaggg 128
>RF00906;MIR1122;DQ890004.1/48-183 4513:Hordeum vulgare
Length = 136
Score = 65.9 bits (33), Expect = 1e-10
Identities = 103/125 (82%), Gaps = 1/125 (0%)
Strand = Plus / Minus
Query: 10 atacttccttcgtcccaaaattcttgttttaaatttgtctaaatacggatgtatcaaatc 69
||||| ||| ||| ||||||||||||| ||| |||||| || ||| | ||||||| | |
Sbjct: 133 atactacctccgttccaaaattcttgtcttagatttgtttagatatgaatgtatctagtt 74
Query: 70 acgttttagtatt-agatacatccgcatctagacgaatctaagataagaattttaggacg 128
| ||||||||||| ||||||||| ||||||| || |||||| |||||||||||||||
Sbjct: 73 aagttttagtatttagatacatcaatttctagacaaagctaagacaagaattttaggacg 14
Query: 129 taggg 133
||||
Sbjct: 13 gaggg 9
>RF00906;MIR1122;AP009567.1/9225-9090 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 136
Score = 54.0 bits (27), Expect = 5e-07
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 26 aaaattcttgttttaaatttgtctaaatacggatgtatcaaatcacgtttt 76
||||||||||| ||| ||||||||| ||| | ||||||| |||||||||||
Sbjct: 20 aaaattcttgtcttagatttgtctagatatgaatgtatctaatcacgtttt 70
Score = 48.1 bits (24), Expect = 3e-05
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 80 attagatacatccgcatctagacgaatctaagataagaatttta 123
||||||||||| | |||||||| ||||||||| ||||||||||
Sbjct: 62 attagatacattcatatctagacaaatctaagacaagaatttta 19
>RF00906;MIR1122;DJ023121.1/176-54 4513:Hordeum vulgare
Length = 123
Score = 54.0 bits (27), Expect = 5e-07
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 95 atctagacgaatctaagataagaattttaggacgtaggg 133
|||||||| ||||||||| ||||||||||||||| ||||
Sbjct: 47 atctagacaaatctaagacaagaattttaggacggaggg 9
Score = 44.1 bits (22), Expect = 5e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 9 gatacttccttcgtcccaaaattcttgttttaaatttgtcta 50
|||||| ||| ||||| ||||||||||| ||| |||||||||
Sbjct: 3 gatactccctccgtcctaaaattcttgtcttagatttgtcta 44
>RF00906;MIR1122;AF427791.1/222786-222921 4513:Hordeum vulgare
Length = 136
Score = 52.0 bits (26), Expect = 2e-06
Identities = 69/82 (84%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 11 tacttccttcgtcccaaaattcttgttttaaatttgtctaaatacggatgtatcaaatca 70
|||| ||| |||||||||||| |||| ||| |||||| || ||| | ||||||| | |||
Sbjct: 5 tactccctccgtcccaaaattattgtcttagatttgtttagatatgaatgtatctagtca 64
Query: 71 cgttttagt-attagatacatc 91
|||||||| ||||||||||||
Sbjct: 65 agttttagtaattagatacatc 86
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 10 atacttccttcgtcccaaaattcttgttttaaatttgt 47
||||| ||||||||||||||||||||| |||| |||||
Sbjct: 133 atactcccttcgtcccaaaattcttgtcttaactttgt 96
>RF00906;MIR1122;DQ123819.1/2832-2966 4571:Triticum turgidum
Length = 135
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 32 cttgttttaaatttgtctaaatacggatgtatc 64
||||| ||||||||||||| |||||||||||||
Sbjct: 26 cttgtcttaaatttgtctagatacggatgtatc 58
>RF00906;MIR1122;X73528.1/281-181 4565:Triticum aestivum (bread
wheat)
Length = 101
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 10 atacttccttcgtcccaaaattcttgttttaaatttgtct 49
||||| ||||||| ||||||||||||| ||| ||||||||
Sbjct: 4 atactcccttcgttccaaaattcttgtcttagatttgtct 43
>RF00906;MIR1122;AF459639.1/191055-190921 4568:Triticum monococcum
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 42 atttgtctaaatacggatgtatcaaatcacgttttagtattagatacatccgcatctaga 101
||||||||| ||||||||||||| | | | ||||||| |||||| |||| |||||||
Sbjct: 100 atttgtctagatacggatgtatctagactcattttagtgctagatatctccgtatctaga 41
Query: 102 cgaatctaaga 112
| |||||||||
Sbjct: 40 caaatctaaga 30
>RF00906;MIR1122;EU862588.1/607-710 4516:Hordeum bulbosum
Length = 104
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 74 tttagtattagatacatccgcatctagacgaatctaaga 112
|||||| ||||||||||||| ||||||| |||||||||
Sbjct: 37 tttagtgttagatacatccgtatctagataaatctaaga 75
>RF00906;MIR1122;EU626553.1/30213-30109 4572:Triticum urartu
Length = 105
Score = 44.1 bits (22), Expect = 5e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 24 ccaaaattcttgttttaaatttgtctaaatacggatgt 61
||||||||||||| ||| |||| |||| ||||||||||
Sbjct: 17 ccaaaattcttgtcttagatttatctagatacggatgt 54
