miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;FJ374610.1/683-817 4568:Triticum monococcum
Length = 135
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 6 tttgtctagatatggatgtatctaa 30
|||||||||||||||||||||||||
Sbjct: 99 tttgtctagatatggatgtatctaa 75
>RF00906;MIR1122;AY887089.1/1801-1936 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 136
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 tttgtctagatatggatgtatcta 29
||||||||||||||||||||||||
Sbjct: 37 tttgtctagatatggatgtatcta 60
>RF00906;MIR1122;EU660901.1/93085-92951 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 5 ctttgtctagatatggatgtatctaa 30
||||||||||||| ||||||||||||
Sbjct: 100 ctttgtctagatacggatgtatctaa 75
>RF00906;MIR1122;AF459639.1/191055-190921 4568:Triticum monococcum
Length = 135
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 43 tctaggtacatccgtatctagacaaa 68
||||| ||||||||||||||||||||
Sbjct: 74 tctagatacatccgtatctagacaaa 99
>RF00906;MIR1122;DQ123819.1/2832-2966 4571:Triticum turgidum
Length = 135
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 43 tctaggtacatccgtatctagacaaa 68
||||| ||||||||||||||||||||
Sbjct: 62 tctagatacatccgtatctagacaaa 37
