miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;ABXC01001787.1/21430-21187 4558:Sorghum bicolor
(sorghum)
Length = 244
Score = 117 bits (59), Expect = 7e-26
Identities = 77/83 (92%)
Strand = Plus / Plus
Query: 126 gagataggcctgtggctagcatgaccgaggagccgcatcgtcccctcgctggccgctctt 185
||||||||| ||||| | ||||||||||||||| ||| |||||||| |||||||||||||
Sbjct: 154 gagataggcttgtggtttgcatgaccgaggagctgcaccgtccccttgctggccgctctt 213
Query: 186 tggattgaagggagctctgcatc 208
|||||||||||||||||||||||
Sbjct: 214 tggattgaagggagctctgcatc 236
Score = 61.9 bits (31), Expect = 4e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 69 gggtggtacagctgctcgttcatggttcccactatccta 107
||||||| | |||||||||||||||||||||||||||||
Sbjct: 48 gggtggttccgctgctcgttcatggttcccactatccta 86
>RF00638;MIR159;EU955086.1/295-527 4577:Zea mays
Length = 233
Score = 109 bits (55), Expect = 2e-23
Identities = 76/83 (91%)
Strand = Plus / Plus
Query: 126 gagataggcctgtggctagcatgaccgaggagccgcatcgtcccctcgctggccgctctt 185
||||||||| ||||| | ||||||||||||||| ||| || ||||| |||||||||||||
Sbjct: 143 gagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctggccgctctt 202
Query: 186 tggattgaagggagctctgcatc 208
|||||||||||||||||||||||
Sbjct: 203 tggattgaagggagctctgcatc 225
Score = 65.9 bits (33), Expect = 2e-10
Identities = 67/77 (87%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 31 ggagctcctatcattccaatgaaaggtcttgctaggaggggtggtacagctgctcgttca 90
||||||||||||||||||||||| |||| | | | |||| ||| | ||||||||||||
Sbjct: 12 ggagctcctatcattccaatgaagggtcgtacc-gaagggccggttccgctgctcgttca 70
Query: 91 tggttcccactatccta 107
|||||||||||||||||
Sbjct: 71 tggttcccactatccta 87
>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica Group
Length = 187
Score = 83.8 bits (42), Expect = 1e-15
Identities = 75/86 (87%)
Strand = Plus / Plus
Query: 126 gagataggcctgtggctagcatgaccgaggagccgcatcgtcccctcgctggccgctctt 185
||||||||| ||||| | |||||||| |||||||| ||| | ||| |||| || |||||
Sbjct: 97 gagataggcttgtggtttgcatgaccaaggagccgaatcaactccttgctgaccactctt 156
Query: 186 tggattgaagggagctctgcatcttg 211
||||||||||||||||||||||||||
Sbjct: 157 tggattgaagggagctctgcatcttg 182
>RF00638;MIR159;EU947090.1/674-895 4577:Zea mays
Length = 222
Score = 77.8 bits (39), Expect = 6e-14
Identities = 76/87 (87%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 126 gagataggcctgtggctagcatgaccgaggagccgcatcgtcccct-cgctggccgctct 184
||||| ||| ||||| | ||||||||||||||| || ||||||||| || || ||||| |
Sbjct: 131 gagatgggcttgtggtttgcatgaccgaggagctgcctcgtccccttcgttgaccgctgt 190
Query: 185 ttggattgaagggagctctgcatcttg 211
||||| |||||||||||||||||||||
Sbjct: 191 ttggagtgaagggagctctgcatcttg 217
Score = 65.9 bits (33), Expect = 2e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 69 gggtggtacagctgctcgttcatggttcccact 101
|||||||||||||||||||||||||||||||||
Sbjct: 48 gggtggtacagctgctcgttcatggttcccact 80
>RF00638;MIR159;ABXC01001787.1/15180-14953 4558:Sorghum bicolor
(sorghum)
Length = 228
Score = 75.8 bits (38), Expect = 2e-13
Identities = 75/86 (87%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 126 gagataggcctgtggctagcatgaccgaggagccgcatcgtcccc-tcgctggccgctct 184
||||| ||||||||| | ||||||||||||||| ||||||||||| | | | ||||||
Sbjct: 137 gagatgggcctgtggtttgcatgaccgaggagctgcatcgtcccctttgtcgaccgctcg 196
Query: 185 ttggattgaagggagctctgcatctt 210
||||||||||||||||||||| ||||
Sbjct: 197 ttggattgaagggagctctgcgtctt 222
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 78 agctgctcgttcatggttcccactatcc 105
||||||||||||||||||||||||||||
Sbjct: 57 agctgctcgttcatggttcccactatcc 84
>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
Japonica Group
Length = 274
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 181 ctctttggattgaagggagctctgcatctt 210
||||||||||||||||||||||||||||||
Sbjct: 239 ctctttggattgaagggagctctgcatctt 268
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 182 tctttggattgaagggagctctgcatctt 210
|||||||||||||||||||||| ||||||
Sbjct: 170 tctttggattgaagggagctctacatctt 198
>RF00638;MIR159;AC034107.5/26716-26923 3702:Arabidopsis thaliana
(thale cress)
Length = 208
Score = 48.1 bits (24), Expect = 6e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 182 tctttggattgaagggagctctgcatct 209
|||||||||||||||||||||| |||||
Sbjct: 174 tctttggattgaagggagctcttcatct 201
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 44.1 bits (22), Expect = 9e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 184 tttggattgaagggagctctgcatct 209
|||||||||||||||||||| |||||
Sbjct: 162 tttggattgaagggagctctacatct 187
