miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;ABXC01002436.1/220577-220488 4558:Sorghum bicolor
(sorghum)
Length = 90
Score = 113 bits (57), Expect = 6e-25
Identities = 82/89 (92%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 20 tgtgcctggctccctgtatgccacacatgtagcccaaccca-agaatgtggttgcctgct 78
||||||||||||||||||||||||||||||||||||||||| | | |||||||||||
Sbjct: 2 tgtgcctggctccctgtatgccacacatgtagcccaacccatatgctaaggttgcctgct 61
Query: 79 gtgggtggcgtgcaaggtgccaagcatgc 107
||||||||||||||||| |||||||||||
Sbjct: 62 gtgggtggcgtgcaaggggccaagcatgc 90
>RF00247;mir-160;AAAA02020747.1/14884-14971 39946:Oryza sativa
Indica Group
Length = 88
Score = 93.7 bits (47), Expect = 5e-19
Identities = 78/87 (89%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 21 gtgcctggctccctgtatgccacacatgtagcccaacccaagaatgtggttgcctgctgt 80
||||||||||||||||||||||| |||||||||||| ||| | |||| ||| ||||||
Sbjct: 3 gtgcctggctccctgtatgccactcatgtagcccaatccatg-gtgtgtttggatgctgt 61
Query: 81 gggtggcgtgcaaggtgccaagcatgc 107
||||||||||||||| |||||||||||
Sbjct: 62 gggtggcgtgcaaggagccaagcatgc 88
>RF00247;mir-160;EU974767.1/328-419 4577:Zea mays
Length = 92
Score = 85.7 bits (43), Expect = 1e-16
Identities = 80/90 (88%), Gaps = 3/90 (3%)
Strand = Plus / Plus
Query: 21 gtgcctggctccctgtatgccacacatgtagc--ccaaccca-agaatgtggttgcctgc 77
|||||||||||||||||||||||||||||||| |||||| | | | ||||||||||
Sbjct: 3 gtgcctggctccctgtatgccacacatgtagcgcccaacctagatgctaaggttgcctgc 62
Query: 78 tgtgggtggcgtgcaaggtgccaagcatgc 107
|||||||||||||||||| |||||||||||
Sbjct: 63 tgtgggtggcgtgcaaggggccaagcatgc 92
>RF00247;mir-160;AAAA02005231.1/55127-55040 39946:Oryza sativa
Indica Group
Length = 88
Score = 83.8 bits (42), Expect = 5e-16
Identities = 79/89 (88%), Gaps = 3/89 (3%)
Strand = Plus / Plus
Query: 20 tgtgcctggctccctgtatgccacacatgtagcccaaccca-agaatgtggttgcctgct 78
|||||||||||||||||||||||||||||||| |||||||| | | ||||||||| |
Sbjct: 2 tgtgcctggctccctgtatgccacacatgtagaccaacccatggtgtctggttgcctac- 60
Query: 79 gtgggtggcgtgcaaggtgccaagcatgc 107
|||||||||||||||| |||||||||||
Sbjct: 61 -tgggtggcgtgcaaggagccaagcatgc 88
>RF00247;mir-160;EU975926.1/304-390 4577:Zea mays
Length = 87
Score = 79.8 bits (40), Expect = 8e-15
Identities = 78/88 (88%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 20 tgtgcctggctccctgtatgccacacatgtagcccaacccaagaatgtggttgcctgctg 79
|||||||||||||||||||||||||||||||| ||||||| | ||| ||| |||||
Sbjct: 2 tgtgcctggctccctgtatgccacacatgtag-ccaacccgtg-gcgtgattggatgctg 59
Query: 80 tgggtggcgtgcaaggtgccaagcatgc 107
|||||||||||||||| |||||||||||
Sbjct: 60 tgggtggcgtgcaaggagccaagcatgc 87
>RF00247;mir-160;FM878703.1/301-387 213592:Musa acuminata subsp.
burmannicoides
Length = 87
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 20 tgtgcctggctccctgtatgccacacatg 48
|||||||||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgccacacatg 30
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 77 ctgtgggtggcgtgcaaggtgccaagcatgc 107
|||||||||| |||||||| |||||||||||
Sbjct: 57 ctgtgggtggtgtgcaaggagccaagcatgc 87
>RF00247;mir-160;CAAP02006197.1/486-575 29760:Vitis vinifera
Length = 90
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 20 tgtgcctggctccctgtatgccacac 45
||||||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgccacac 27
>RF00247;mir-160;Z97344.2/54320-54406 3702:Arabidopsis thaliana
(thale cress)
Length = 87
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 gtgcctggctccctgtatgccaca 44
||||||||||||||||||||||||
Sbjct: 3 gtgcctggctccctgtatgccaca 26
>RF00247;mir-160;ABXC01004530.1/55208-55296 4558:Sorghum bicolor
(sorghum)
Length = 89
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 tgtgcctggctccctgtatgccac 43
||||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgccac 25
>RF00247;mir-160;EU798771.1/193-98 58934:Zizania latifolia
Length = 96
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 tgtgcctggctccctgtatgccac 43
||||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgccac 25
>RF00247;mir-160;AAAA02022910.1/14752-14660 39946:Oryza sativa
Indica Group
Length = 93
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 tgtgcctggctccctgtatgccac 43
||||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgccac 25
>RF00247;mir-160;DQ455766.1/101-12 169985:Oenocarpus bataua
Length = 90
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 tgtgcctggctccctgtatgccac 43
||||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgccac 25
>RF00247;mir-160;ABIM01012188.1/1387-1471 3649:Carica papaya
(papaya)
Length = 85
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 tgtgcctggctccctgtatgcca 42
|||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgcca 24
>RF00247;mir-160;ABIM01022486.1/4654-4741 3649:Carica papaya
(papaya)
Length = 88
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 tgcctggctccctgtatgccaca 44
|||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccaca 26
>RF00247;mir-160;AC189245.2/87285-87372 51351:Brassica rapa subsp.
pekinensis
Length = 88
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 tgcctggctccctgtatgccaca 44
|||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccaca 26
>RF00247;mir-160;AC183492.1/98297-98383 3712:Brassica oleracea
Length = 87
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 tgcctggctccctgtatgccaca 44
|||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccaca 26
>RF00247;mir-160;AARH01003540.1/65975-65890 3694:Populus
trichocarpa
Length = 86
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 tgtgcctggctccctgtatgcca 42
|||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgcca 24
>RF00247;mir-160;AARH01000886.1/36098-36187 3694:Populus
trichocarpa
Length = 90
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 tgcctggctccctgtatgccaca 44
|||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccaca 26
>RF00247;mir-160;AY728424.1/1-89 3694:Populus trichocarpa
Length = 89
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 tgcctggctccctgtatgccaca 44
|||||||||||||||||||||||
Sbjct: 3 tgcctggctccctgtatgccaca 25
>RF00247;mir-160;AASG02024242.1/1209-1298 3988:Ricinus communis
(castor bean)
Length = 90
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 tgcctggctccctgtatgccaca 44
|||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccaca 26
>RF00247;mir-160;AASG02001090.1/34048-34133 3988:Ricinus communis
(castor bean)
Length = 86
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 tgtgcctggctccctgtatgcca 42
|||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgcca 24
>RF00247;mir-160;AC126015.41/7942-7857 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 tgtgcctggctccctgtatgcca 42
|||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgcca 24
>RF00247;mir-160;AC148995.2/105120-105205 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 tgtgcctggctccctgtatgcca 42
|||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgcca 24
>RF00247;mir-160;BABK01026793.1/1193-1108 34305:Lotus japonicus
Length = 86
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 tgtgcctggctccctgtatgcca 42
|||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgcca 24
>RF00247;mir-160;EU548646.1/366-280 3702:Arabidopsis thaliana
(thale cress)
Length = 87
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgcctggctccctgtatgccac 43
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;EU945131.1/219-303 4577:Zea mays
Length = 85
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgcctggctccctgtatgccac 43
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;ABXC01000057.1/79229-79124 4558:Sorghum bicolor
(sorghum)
Length = 106
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgcctggctccctgtatgccac 43
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;ABXC01000819.1/394312-394212 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgcctggctccctgtatgccac 43
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;AAAA02011132.1/25365-25500 39946:Oryza sativa
Indica Group
Length = 136
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgcctggctccctgtatgccac 43
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;ABEU01014597.1/43590-43504 145481:Physcomitrella
patens subsp. patens
Length = 87
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgcctggctccctgtatgccac 43
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;ABEU01007064.1/27442-27356 145481:Physcomitrella
patens subsp. patens
Length = 87
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgcctggctccctgtatgccac 43
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
