miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;U29095.1/333-439 4565:Triticum aestivum (bread
wheat)
Length = 107
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 99 aaagttgagtcacttatttcaggacggagggagta 133
|||||||||||||||||||| ||||||||||||||
Sbjct: 69 aaagttgagtcacttatttcgggacggagggagta 103
>RF00906;MIR1122;EF540321.1/236564-236678 4571:Triticum turgidum
Length = 115
Score = 60.0 bits (30), Expect = 8e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 51 tggatgtatctggatgtattttagttatagatac 84
||||||||||| ||||||||||||||||||||||
Sbjct: 39 tggatgtatctagatgtattttagttatagatac 72
>RF00906;MIR1122;L41869.1/3010-3134 4513:Hordeum vulgare
Length = 125
Score = 60.0 bits (30), Expect = 8e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 51 tggatgtatctggatgtattttagttatagatac 84
||||||||||| ||||||||||||||||||||||
Sbjct: 39 tggatgtatctagatgtattttagttatagatac 72
>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
Length = 104
Score = 54.0 bits (27), Expect = 5e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 99 aaagttgagtcacttatttcaggacggagggagta 133
||||||||||||||||||| ||||||||||||||
Sbjct: 66 aaagttgagtcacttattttgggacggagggagta 100
>RF00906;MIR1122;CT009625.1/8885-8999 37682:Aegilops tauschii
Length = 115
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 54 atgtatctggatgtattttagttatagatac 84
|||||||| ||||||||||||||||||||||
Sbjct: 74 atgtatctagatgtattttagttatagatac 44
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 54.0 bits (27), Expect = 5e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 99 aaagttgagtcacttatttcaggacggagggagta 133
||||||||||||||||||| ||||||||||||||
Sbjct: 39 aaagttgagtcacttattttgggacggagggagta 5
>RF00906;MIR1122;AB298184.1/15044-14931 4565:Triticum aestivum
(bread wheat)
Length = 114
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 51 tggatgtatctggatgtattttagttatagatac 84
||||||||||| |||||||||||||| |||||||
Sbjct: 38 tggatgtatctagatgtattttagttctagatac 71
>RF00906;MIR1122;AY235466.1/780-656 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 51 tggatgtatctggatgtattttagttatagatac 84
||||||||||| |||||||||||||| |||||||
Sbjct: 39 tggatgtatctagatgtattttagttctagatac 72
>RF00906;MIR1122;AY235464.1/714-838 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 51 tggatgtatctggatgtattttagttatagatac 84
||||||||||| |||||||||||||| |||||||
Sbjct: 87 tggatgtatctagatgtattttagttctagatac 54
>RF00906;MIR1122;EU282650.1/1397-1273 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 51 tggatgtatctggatgtattttagttatagatac 84
||||||||||| |||||||||||||| |||||||
Sbjct: 39 tggatgtatctagatgtattttagttctagatac 72
>RF00906;MIR1122;AY013754.1/1932-2046 37682:Aegilops tauschii
Length = 115
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 51 tggatgtatctggatgtattttagttatagatac 84
||||||||||| |||||||||||||| |||||||
Sbjct: 77 tggatgtatctagatgtattttagttctagatac 44
>RF00906;MIR1122;AB298185.1/18759-18893 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 52 ggatgtatctggatgtattttagttatagatac 84
|||||||||| |||||||||||||| |||||||
Sbjct: 86 ggatgtatctagatgtattttagttctagatac 54
>RF00906;MIR1122;EU117148.1/1866-1980 4571:Triticum turgidum
Length = 115
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 51 tggatgtatctggatgtattttagttatagata 83
||||||||||| |||||||||||||| ||||||
Sbjct: 39 tggatgtatctagatgtattttagttttagata 71
>RF00906;MIR1122;AF474373.1/52258-52134 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 51 tggatgtatctggatgtattttagttatagata 83
||||||||||| |||||||||||||| ||||||
Sbjct: 39 tggatgtatctagatgtattttagttctagata 71
>RF00906;MIR1122;DQ145552.1/668-803 4573:Aegilops speltoides
Length = 136
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 52 ggatgtatctggatgtattttagttatagatac 84
|||||||||| |||||||||||||| |||||||
Sbjct: 86 ggatgtatctagatgtattttagttctagatac 54
>RF00906;MIR1122;EU730900.1/55128-55253 15368:Brachypodium
distachyon
Length = 126
Score = 50.1 bits (25), Expect = 8e-06
Identities = 68/81 (83%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 54 atgtatctggatgtattttagt-tatagatacctccgtatctagaaaaagttgagtcact 112
|||||||| || |||||||||| ||||||||| ||| | | |||| ||| ||||||||||
Sbjct: 42 atgtatctagacgtattttagtatatagatacgtccatttttagacaaatttgagtcact 101
Query: 113 tatttcaggacggagggagta 133
|| | ||||||||||||||
Sbjct: 102 taatatgggacggagggagta 122
>RF00906;MIR1122;AY491681.1/88752-88866 4568:Triticum monococcum
Length = 115
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 54 atgtatctggatgtattttagttatagatacctccgtatc 93
|||||||| |||||||||||||| ||||||| ||| ||||
Sbjct: 74 atgtatctagatgtattttagttctagatacatccatatc 35
>RF00906;MIR1122;EF059989.1/24895-24770 29664:Brachypodium
sylvaticum
Length = 126
Score = 48.1 bits (24), Expect = 3e-05
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 76 tatagatacctccgtatctagaaaaagttgagtcacttatttcaggacggagggagtaga 135
||||||||| ||| ||| |||| ||| |||||||||||| | ||||||||||||||||
Sbjct: 65 tatagatacgtccatatttagacaaatttgagtcacttaatatgggacggagggagtaga 124
>RF00906;MIR1122;AF459639.1/191055-190921 4568:Triticum monococcum
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 39 tttgtctagatgtggatgtatctggatgtattttagttatagatacctccgtatctaga 97
||||||||||| |||||||||| || |||||||| |||||| |||||||||||||
Sbjct: 99 tttgtctagatacggatgtatctagactcattttagtgctagatatctccgtatctaga 41
>RF00906;MIR1122;FJ225151.1/115-1 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 54 atgtatctggatgtattttagttatagatac 84
|||||||| |||||||||||||| |||||||
Sbjct: 79 atgtatctagatgtattttagttctagatac 49
>RF00906;MIR1122;AB239678.1/2131-2247 52163:Triticum monococcum
subsp. aegilopoides
Length = 117
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 99 aaagttgagtcacttatttcaggacggagggagta 133
|||||||||||||||| || ||||||||||||||
Sbjct: 39 aaagttgagtcacttaatttgggacggagggagta 5
>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
Length = 116
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 103 ttgagtcacttatttcaggacggagggagta 133
||||||||||||||| ||||||||||||||
Sbjct: 82 ttgagtcacttattttgggacggagggagta 112
>RF00906;MIR1122;AJ507395.1/7785-7899 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 103 ttgagtcacttatttcaggacggagggagta 133
||||||||||||||| ||||||||||||||
Sbjct: 81 ttgagtcacttattttgggacggagggagta 111
>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
Length = 94
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 99 aaagttgagtcacttatttcaggacggagggagta 133
||||||||||||||||||| |||| |||||||||
Sbjct: 39 aaagttgagtcacttattttgggacagagggagta 5
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 99 aaagttgagtcacttatttcaggacggagggagta 133
|||||||||||||||| || ||||||||||||||
Sbjct: 56 aaagttgagtcacttaatttgggacggagggagta 90
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 99 aaagttgagtcacttatttcaggacggagggagta 133
||||||||| ||||||||| ||||||||||||||
Sbjct: 67 aaagttgagacacttattttgggacggagggagta 101
>RF00906;MIR1122;BT009295.1/1923-1809 4565:Triticum aestivum
(bread wheat)
Length = 115
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 51 tggatgtatctggatgtattttagttatagatac 84
|||||||||| |||||||||||||| |||||||
Sbjct: 77 tggatgtatcaagatgtattttagttctagatac 44
>RF00906;MIR1122;AM932686.1/4713-4599 4565:Triticum aestivum
(bread wheat)
Length = 115
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 51 tggatgtatctggatgtattttagttatagatac 84
||||||||||| || ||||||||||| |||||||
Sbjct: 77 tggatgtatctagacgtattttagttctagatac 44
>RF00906;MIR1122;AY951945.1/36609-36485 4568:Triticum monococcum
Length = 125
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 55 tgtatctggatgtattttagttatagatac 84
||||||| |||||||||||||| |||||||
Sbjct: 43 tgtatctagatgtattttagttctagatac 72
>RF00906;MIR1122;EU282564.1/350-463 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 114
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 51 tggatgtatctggatgtattttagttatagatac 84
||||||||||| ||||||||| |||| |||||||
Sbjct: 39 tggatgtatctagatgtatttcagttctagatac 72
>RF00906;MIR1122;AF459085.1/1867-1743 4513:Hordeum vulgare
Length = 125
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 51 tggatgtatctggatgtattttagttatagatac 84
||||||||||| || ||||||||||| |||||||
Sbjct: 87 tggatgtatctagacgtattttagttctagatac 54
>RF00906;MIR1122;AF548379.1/5968-6092 37682:Aegilops tauschii
Length = 125
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 51 tggatgtatctggatgtattttagttatagatac 84
||||||||||| || ||||||||||| |||||||
Sbjct: 39 tggatgtatctagacgtattttagttctagatac 72
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 44.1 bits (22), Expect = 5e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 6 gtactccctccgtccataaagaagtgacttaactttgt 43
||||||||||||||| ||| ||||| |||||||||||
Sbjct: 102 gtactccctccgtcccaaaataagtgtcttaactttgt 65
