miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU730900.1/33277-33412 15368:Brachypodium
distachyon
Length = 136
Score = 63.9 bits (32), Expect = 5e-10
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 76 tgtctagatgcattcaaattttgacaaacttccgacatgtttcatgggacggagggagta 135
||||||||| ||||||||||||||||||||| ||||| ||| | ||||||||||||||
Sbjct: 64 tgtctagatacattcaaattttgacaaacttgagacatcttttgttggacggagggagta 5
Score = 58.0 bits (29), Expect = 3e-08
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 40 tttgtcaaaatttggatgtatctagctactagttagtgtctagatgcattcaaattt 96
|||||||||||||| |||||||||| | | ||||||| |||||||||||||||||
Sbjct: 37 tttgtcaaaatttgaatgtatctagacatgacttagtgtatagatgcattcaaattt 93
>RF00906;MIR1122;EU730897.1/94709-94844 15368:Brachypodium
distachyon
Length = 136
Score = 63.9 bits (32), Expect = 5e-10
Identities = 80/96 (83%)
Strand = Plus / Plus
Query: 40 tttgtcaaaatttggatgtatctagctactagttagtgtctagatgcattcaaattttga 99
||||||||||||| ||||||||||| | | ||||||| ||||| | ||||||||||||
Sbjct: 37 tttgtcaaaatttagatgtatctagacatgacttagtgtatagatacgttcaaattttga 96
Query: 100 caaacttccgacatgtttcatgggacggagggagta 135
|||||| ||||| ||| | ||||||||||||||
Sbjct: 97 taaacttgagacatcttttgttggacggagggagta 132
>RF00906;MIR1122;EU730897.1/80693-80828 15368:Brachypodium
distachyon
Length = 136
Score = 48.1 bits (24), Expect = 3e-05
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 76 tgtctagatgcattcaaattttgacaaacttccgacatgtttcatgggacggagggagta 135
||||||||| |||||||||||||||||||| ||||| ||| | |||||||| |||||
Sbjct: 64 tgtctagatttattcaaattttgacaaacttaagacatcttttcttggacggagtgagta 5
>RF00906;MIR1122;EU730899.1/36951-37090 15368:Brachypodium
distachyon
Length = 140
Score = 48.1 bits (24), Expect = 3e-05
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 76 tgtctagatgcattcaaattttgacaaacttccgacatgtttcatgggacggagggagta 135
||||||||| || |||||||||||||| || ||||| ||| || ||||||||||||||
Sbjct: 64 tgtctagatttatccaaattttgacaaatttgagacatcttttattggacggagggagta 5
Score = 48.1 bits (24), Expect = 3e-05
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 13 cctccgtcttataaaacatgtctaagatttgtcaaaatttggat 56
|||||||| |||||| |||||| | ||||||||||||||||||
Sbjct: 10 cctccgtccaataaaagatgtctcaaatttgtcaaaatttggat 53
>RF00906;MIR1122;EU730894.1/75460-75595 15368:Brachypodium
distachyon
Length = 136
Score = 48.1 bits (24), Expect = 3e-05
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 76 tgtctagatgcattcaaattttgacaaacttccgacatgtttcatgggacggagggagta 135
||||||||| |||||||||||||||||||| ||||| ||| | ||||| ||||||||
Sbjct: 64 tgtctagatatattcaaattttgacaaacttgagacatcttttgttggacgaagggagta 5
>RF00906;MIR1122;EU730895.1/46100-45965 15368:Brachypodium
distachyon
Length = 136
Score = 44.1 bits (22), Expect = 5e-04
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 43 gtcaaaatttggatgtatctagctactagttagtgtctagatgcattcaaattt 96
|||||||||||||||||| ||| | | ||||||| || ||||||||||||||
Sbjct: 40 gtcaaaatttggatgtatttagacatgacttagtgtatacatgcattcaaattt 93
