miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00446;mir-133;ABRQ01222469.1/2189-2276 9813:Procavia capensis
(cape rock hyrax)
Length = 88
Score = 121 bits (61), Expect = 2e-27
Identities = 70/73 (95%)
Strand = Plus / Plus
Query: 9 ctgctatggctggtcaaacggaaccaagtccgtcttccttagaggtttggtccccttcaa 68
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 7 ctgctctggctggtcaaacggaaccaagtccgtcttcctgagaggtttggtccccttcaa 66
Query: 69 ccagctactgcag 81
|||||||| ||||
Sbjct: 67 ccagctacagcag 79
>RF00446;mir-133;AADN02018284.1/53-140 9031:Gallus gallus
(chicken)
Length = 88
Score = 93.7 bits (47), Expect = 4e-19
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 9 ctgctatggctggtcaaacggaaccaagtccgtcttccttagaggtttggtccccttcaa 68
||||| |||||||||||||||||||||| |||||||| | |||||||||||||||||||
Sbjct: 7 ctgctctggctggtcaaacggaaccaagcccgtcttcttcggaggtttggtccccttcaa 66
Query: 69 ccagcta 75
|||||||
Sbjct: 67 ccagcta 73
>RF00446;mir-133;AAWZ01012531.1/25343-25256 28377:Anolis
carolinensis (green anole)
Length = 88
Score = 77.8 bits (39), Expect = 2e-14
Identities = 69/79 (87%)
Strand = Plus / Plus
Query: 9 ctgctatggctggtcaaacggaaccaagtccgtcttccttagaggtttggtccccttcaa 68
||||| |||||||||||| ||||||| | | ||||||||| ||||||||||||||| ||
Sbjct: 7 ctgctctggctggtcaaagggaaccacggctgtcttccttgaaggtttggtcccctttaa 66
Query: 69 ccagctactgcagtactga 87
|||||||| ||||| ||||
Sbjct: 67 ccagctacagcagtcctga 85
>RF00446;mir-133;BAAF04047944.1/3038-2950 8090:Oryzias latipes
(Japanese medaka)
Length = 89
Score = 77.8 bits (39), Expect = 2e-14
Identities = 64/71 (90%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 10 tgctatggctggtcaaacggaaccaagtccg-tcttccttagaggtttggtccccttcaa 68
|||| |||||||||||||||||||||||| | | || | ||||||||||||||||||||
Sbjct: 8 tgctgtggctggtcaaacggaaccaagtcaggtgtttcagagaggtttggtccccttcaa 67
Query: 69 ccagctactgc 79
|||||||||||
Sbjct: 68 ccagctactgc 78
>RF00446;mir-133;AANH01006842.1/37352-37440 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 89
Score = 75.8 bits (38), Expect = 8e-14
Identities = 60/66 (90%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 15 tggctggtcaaacggaaccaagtccg-tcttccttagaggtttggtccccttcaaccagc 73
|||||||||||||||||||||||| | | || || ||||||||||||||||||||||||
Sbjct: 13 tggctggtcaaacggaaccaagtcaggtgtttctgtgaggtttggtccccttcaaccagc 72
Query: 74 tactgc 79
||||||
Sbjct: 73 tactgc 78
>RF00446;mir-133;CAAK05040482.1/11317-11401 7955:Danio rerio
(zebrafish)
Length = 85
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 49 agaggtttggtccccttcaaccagctactgc 79
|||||||||||||| ||||||||||||||||
Sbjct: 46 agaggtttggtccctttcaaccagctactgc 76
>RF00446;mir-133;AACT01038735.1/1889-1809 51511:Ciona savignyi
Length = 81
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 ggtttggtccccttcaaccagctac 76
|||||||||||||||||||||||||
Sbjct: 45 ggtttggtccccttcaaccagctac 69
>RF00446;mir-133;AABS01000844.1/21320-21411 7719:Ciona
intestinalis
Length = 92
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 52 ggtttggtccccttcaaccagctactgc 79
||||||||||||||||||||||| ||||
Sbjct: 54 ggtttggtccccttcaaccagctgctgc 81
