miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU730901.1/108914-109038 15368:Brachypodium
distachyon
Length = 125
Score = 71.9 bits (36), Expect = 2e-12
Identities = 63/72 (87%)
Strand = Plus / Minus
Query: 11 tactccctccgttccataattcttgtcgcaaatttagatgtatgtagacatattttgtga 70
||||||| |||||||||||||||||||| || ||| |||||| |||||| |||| |||
Sbjct: 121 tactcccgccgttccataattcttgtcgaaatcttacatgtatctagacactttttatga 62
Query: 71 atagatacatcc 82
||||||||||||
Sbjct: 61 atagatacatcc 50
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 11 tactccctccgttccataattcttgtcgcaaa 42
||||||||||||||||||||||||||| ||||
Sbjct: 5 tactccctccgttccataattcttgtctcaaa 36
>RF00906;MIR1122;EU730902.1/42384-42258 15368:Brachypodium
distachyon
Length = 127
Score = 67.9 bits (34), Expect = 3e-11
Identities = 67/77 (87%), Gaps = 2/77 (2%)
Strand = Plus / Minus
Query: 8 tagtactccctccgttccataattcttgtcgcaaatttagatgtatgtagacatattttg 67
||||||||||||||||||||||||||||||| || ||| |||||| ||||| | ||||
Sbjct: 126 tagtactccctccgttccataattcttgtcgaaatattacatgtatctagacgtgttttt 67
Query: 68 t--gaatagatacatcc 82
| ||||||||||||||
Sbjct: 66 taggaatagatacatcc 50
Score = 60.0 bits (30), Expect = 7e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 11 tactccctccgttccataattcttgtcgcaaatt 44
||||||||||||||||||||||||||| ||||||
Sbjct: 5 tactccctccgttccataattcttgtctcaaatt 38
>RF00906;MIR1122;EF059989.1/222260-222384 29664:Brachypodium
sylvaticum
Length = 125
Score = 63.9 bits (32), Expect = 5e-10
Identities = 62/72 (86%)
Strand = Plus / Minus
Query: 11 tactccctccgttccataattcttgtcgcaaatttagatgtatgtagacatattttgtga 70
||||||||||||| |||||||||||||| || ||| |||||| ||||| | |||| |||
Sbjct: 121 tactccctccgtttcataattcttgtcgaaatcttacatgtatctagacgttttttatga 62
Query: 71 atagatacatcc 82
||| ||||||||
Sbjct: 61 atatatacatcc 50
>RF00906;MIR1122;AM180263.1/1164-1082 4513:Hordeum vulgare
Length = 83
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 8 tagtactccctccgttccataattcttgtcg 38
|||||||||||||||||||||||||||||||
Sbjct: 2 tagtactccctccgttccataattcttgtcg 32
>RF00906;MIR1122;EU730902.1/127235-127359 15368:Brachypodium
distachyon
Length = 125
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 11 tactccctccgttccataattcttgtcgcaaattt 45
||||||||||||||||||||||||||| |||||||
Sbjct: 121 tactccctccgttccataattcttgtctcaaattt 87
Score = 48.1 bits (24), Expect = 3e-05
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 11 tactccctccgttccataattcttgtcgcaaatttagatgtatgtagacatattttgtga 70
|||| |||| |||||||||||||||||| || ||| |||||| ||||| |||| ||
Sbjct: 5 tactacctctgttccataattcttgtcgaaatattacatgtatctagacgctttttagga 64
Query: 71 atagatacatcc 82
||||||||||||
Sbjct: 65 atagatacatcc 76
>RF00906;MIR1122;EU730896.1/41625-41750 15368:Brachypodium
distachyon
Length = 126
Score = 60.0 bits (30), Expect = 7e-09
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 9 agtactccctccgttccataattcttgtcgcaaatttagatgtatgtagacatattttgt 68
||||||||||||||||||||||||||||| ||| ||| || ||| |||||| ||||
Sbjct: 124 agtactccctccgttccataattcttgtctcaatattacatatatctagacactttttcg 65
Query: 69 gaatagatacatcc 82
||||| ||||||||
Sbjct: 64 gaataaatacatcc 51
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 17 ctccgttccataattcttgtcgcaaattt 45
||||||||||||||||||||| |||||||
Sbjct: 11 ctccgttccataattcttgtctcaaattt 39
>RF00906;MIR1122;EF059989.1/54267-54145 29664:Brachypodium
sylvaticum
Length = 123
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 10 gtactccctccgttccataattcttgtcgcaaattt 45
|||||||||||||| ||||||||||||| |||||||
Sbjct: 4 gtactccctccgtttcataattcttgtctcaaattt 39
Score = 50.1 bits (25), Expect = 7e-06
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 10 gtactccctccgttccataattcttgtcgcaaatttagatgtatgtagacatattttgtg 69
||||||||||||| |||||||||| |||| || ||| |||||| |||| || ||||
Sbjct: 120 gtactccctccgtcccataattctcgtcgaaatattacatgtatctagatatttttttaa 61
Query: 70 aatagatacatcc 82
|||||||||||||
Sbjct: 60 aatagatacatcc 48
>RF00906;MIR1122;EU730899.1/99199-99323 15368:Brachypodium
distachyon
Length = 125
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 10 gtactccctccgttccataattcttgtcgcaaattt 45
||||||| |||||||||||||||||||| |||||||
Sbjct: 122 gtactccttccgttccataattcttgtctcaaattt 87
Score = 54.0 bits (27), Expect = 5e-07
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 10 gtactccctccgttccataattcttgtcgcaaatttagatgtatgtagaca 60
||||| ||||||||||||||||||||||| || ||| |||||| ||||||
Sbjct: 4 gtacttcctccgttccataattcttgtcgaaatattacatgtatctagaca 54
>RF00906;MIR1122;EU730898.1/63863-63739 15368:Brachypodium
distachyon
Length = 125
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 11 tactccctccgttccataattcttgtcg 38
||||||||||||||||||||||||||||
Sbjct: 5 tactccctccgttccataattcttgtcg 32
>RF00906;MIR1122;AK252407.1/1225-1338 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 114
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 8 tagtactccctccgttccataattcttgtcg 38
||||||||||||||||| |||||||||||||
Sbjct: 2 tagtactccctccgttcaataattcttgtcg 32
>RF00906;MIR1122;EU730899.1/90906-91030 15368:Brachypodium
distachyon
Length = 125
Score = 54.0 bits (27), Expect = 5e-07
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 10 gtactccctccgttccataattcttgtcgcaaatttagatgtatgtagacatattttgtg 69
|||||||||||||| |||||||||||| | || ||| |||||| |||||| |||| |
Sbjct: 4 gtactccctccgtttcataattcttgttgaaatattacatgtatctagacactttttagg 63
Query: 70 aatagatacat 80
|||||||||||
Sbjct: 64 aatagatacat 74
Score = 54.0 bits (27), Expect = 5e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 11 tactccctccgttccataattcttgtcgcaaattt 45
|||||||||||||| |||||||||||| |||||||
Sbjct: 121 tactccctccgttcgataattcttgtctcaaattt 87
>RF00906;MIR1122;EU730902.1/94507-94383 15368:Brachypodium
distachyon
Length = 125
Score = 54.0 bits (27), Expect = 5e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 11 tactccctccgttccataattcttgtcgcaaattt 45
||||||||||||||||||||| ||||| |||||||
Sbjct: 5 tactccctccgttccataatttttgtctcaaattt 39
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 17 ctccgttccataattcttgtcg 38
||||||||||||||||||||||
Sbjct: 115 ctccgttccataattcttgtcg 94
>RF00906;MIR1122;EU730898.1/54746-54622 15368:Brachypodium
distachyon
Length = 125
Score = 54.0 bits (27), Expect = 5e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 11 tactccctccgttccataattcttgtcgcaaattt 45
||||||||||||| ||||||||||||| |||||||
Sbjct: 5 tactccctccgtttcataattcttgtctcaaattt 39
>RF00906;MIR1122;AF254799.1/46723-46588 4513:Hordeum vulgare
Length = 136
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 11 tactccctccgttccataattcttgtc 37
|||||||||||||||| ||||||||||
Sbjct: 132 tactccctccgttccaaaattcttgtc 106
>RF00906;MIR1122;DQ890018.1/183-48 77009:Hordeum vulgare subsp.
spontaneum
Length = 136
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 tactccctccgttccataattcttgtc 37
|||||||||||||||| ||||||||||
Sbjct: 5 tactccctccgttccaaaattcttgtc 31
>RF00906;MIR1122;EU730902.1/55282-55158 15368:Brachypodium
distachyon
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 11 tactccctccgttccataattcttgtcgcaaattt 45
||||| ||||||| ||||||||||||| |||||||
Sbjct: 5 tactctctccgtttcataattcttgtctcaaattt 39
>RF00906;MIR1122;EU730902.1/30283-30160 15368:Brachypodium
distachyon
Length = 124
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 11 tactccctccgttccataattcttgtcgcaaattt 45
|||||||||| || ||||||||||||| |||||||
Sbjct: 5 tactccctccatttcataattcttgtctcaaattt 39
