miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00642;mir-23;AAPN01322484.1/282-356 9258:Ornithorhynchus
anatinus (platypus)
Length = 75
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 59 aaatcacattgccagggatttccaactg 86
||||||||||||||||||||||||||||
Sbjct: 45 aaatcacattgccagggatttccaactg 72
>RF00642;mir-23;ABRO01400204.1/368-441 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 74
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 59 aaatcacattgccagggatttccaactg 86
||||||||||||||||||||||||||||
Sbjct: 44 aaatcacattgccagggatttccaactg 71
>RF00642;mir-23;AANH01005378.1/81475-81399 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 58 taaatcacattgccagggatttccaac 84
|||||||||||||||||||||||||||
Sbjct: 46 taaatcacattgccagggatttccaac 72
>RF00642;mir-23;BAAE01159439.1/298-222 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 58 taaatcacattgccagggatttccaac 84
|||||||||||||||||||||||||||
Sbjct: 46 taaatcacattgccagggatttccaac 72
>RF00642;mir-23;AAPY01721327.1/893-821 37347:Tupaia belangeri
(northern tree shrew)
Length = 73
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 57 ataaatcacattgccagggatttccaactg 86
||||||||||||||||| ||||||||||||
Sbjct: 41 ataaatcacattgccagagatttccaactg 70
>RF00642;mir-23;ABRQ01065900.1/2548-2621 9813:Procavia capensis
(cape rock hyrax)
Length = 74
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 59 aaatcacattgccagggatttccaac 84
||||||||||||||||||||||||||
Sbjct: 44 aaatcacattgccagggatttccaac 69
>RF00642;mir-23;BX664751.9/59056-58982 7955:Danio rerio
(zebrafish)
Length = 75
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 59 aaatcacattgccagggatttccaac 84
||||||||||||||||||||||||||
Sbjct: 45 aaatcacattgccagggatttccaac 70
>RF00642;mir-23;AAWZ01000886.1/16013-15939 28377:Anolis
carolinensis (green anole)
Length = 75
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 60 aatcacattgccagggatttccaac 84
|||||||||||||||||||||||||
Sbjct: 46 aatcacattgccagggatttccaac 70
>RF00642;mir-23;BX908735.10/1674-1753 7955:Danio rerio (zebrafish)
Length = 80
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 aaatcacattgccagggatttcca 82
||||||||||||||||||||||||
Sbjct: 50 aaatcacattgccagggatttcca 73
>RF00642;mir-23;CAAB01001656.1/44110-44031 31033:Takifugu rubripes
Length = 80
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 aaatcacattgccagggatttcca 82
||||||||||||||||||||||||
Sbjct: 50 aaatcacattgccagggatttcca 73
>RF00642;mir-23;ABPM01028978.1/952-875 106582:Maylandia zebra
(zebra mbuna)
Length = 78
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 60 aatcacattgccagggatttccaa 83
||||||||||||||||||||||||
Sbjct: 49 aatcacattgccagggatttccaa 72
>RF00642;mir-23;AANH01003598.1/90472-90550 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 aaatcacattgccagggatttcca 82
||||||||||||||||||||||||
Sbjct: 49 aaatcacattgccagggatttcca 72
>RF00642;mir-23;BAAF04082680.1/5350-5271 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 aaatcacattgccagggatttcca 82
||||||||||||||||||||||||
Sbjct: 50 aaatcacattgccagggatttcca 73
>RF00642;mir-23;BAAE01102385.1/318-394 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 60 aatcacattgccagggatttccaa 83
||||||||||||||||||||||||
Sbjct: 48 aatcacattgccagggatttccaa 71
>RF00642;mir-23;AANN01357153.1/1425-1351 9365:Erinaceus europaeus
(western European hedgehog)
Length = 75
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 aaatcacattgccagggatttccaac 84
|||||||||||||||||||| |||||
Sbjct: 45 aaatcacattgccagggattaccaac 70
>RF00642;mir-23;AAPY01550614.1/2244-2174 37347:Tupaia belangeri
(northern tree shrew)
Length = 71
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 ataaatcacattgccagggatt 78
||||||||||||||||||||||
Sbjct: 39 ataaatcacattgccagggatt 60
>RF00642;mir-23;AAVX01508943.1/286-212 7868:Callorhinchus milii
(ghost shark)
Length = 75
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 aaatcacattgccagggatttccaac 84
|||||||||||||||||||| |||||
Sbjct: 45 aaatcacattgccagggattaccaac 70
