miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;BAAF04096587.1/14029-13948 8090:Oryzias latipes
          (Japanese medaka)
          Length = 82

 Score =  157 bits (79), Expect = 3e-38
 Identities = 81/82 (98%)
 Strand = Plus / Plus

                                                                      
Query: 6  gcaaggtgaggtagtaggttgtatagtttttggaataaagccgctcctgtaaaataacta 65
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gcaaggtgaggtagtaggttgtatagtttttggaataaagccgctcctgtaaaataacta 60

                                
Query: 66 tacagnttattacctttcttga 87
          ||||| ||||||||||||||||
Sbjct: 61 tacagtttattacctttcttga 82




>RF00027;let-7;CAAB01006742.1/7972-8057 31033:Takifugu rubripes
          Length = 86

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 6  gcaaggtgaggtagtaggttgtatagttt 34
          |||||||||||||||||||||||||||||
Sbjct: 1  gcaaggtgaggtagtaggttgtatagttt 29




>RF00027;let-7;CR847944.11/44965-45050 7955:Danio rerio
          (zebrafish)
          Length = 86

 Score = 56.0 bits (28), Expect = 8e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 7  caaggtgaggtagtaggttgtatagttt 34
          ||||||||||||||||||||||||||||
Sbjct: 2  caaggtgaggtagtaggttgtatagttt 29




>RF00027;let-7;BX897734.11/94677-94763 7955:Danio rerio
          (zebrafish)
          Length = 87

 Score = 56.0 bits (28), Expect = 8e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 7  caaggtgaggtagtaggttgtatagttt 34
          ||||||||||||||||||||||||||||
Sbjct: 2  caaggtgaggtagtaggttgtatagttt 29




>RF00027;let-7;ABQF01051678.1/9631-9544 59729:Taeniopygia guttata
          Length = 88

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 9  aggtgaggtagtaggttgtatagttt 34
          ||||||||||||||||||||||||||
Sbjct: 4  aggtgaggtagtaggttgtatagttt 29




>RF00027;let-7;AADN02044881.1/4561-4474 9031:Gallus gallus
          (chicken)
          Length = 88

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 9  aggtgaggtagtaggttgtatagttt 34
          ||||||||||||||||||||||||||
Sbjct: 4  aggtgaggtagtaggttgtatagttt 29




>RF00027;let-7;AANH01007473.1/5803-5888 69293:Gasterosteus
          aculeatus (three-spined stickleback)
          Length = 86

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 9  aggtgaggtagtaggttgtatagttt 34
          ||||||||||||||||||||||||||
Sbjct: 4  aggtgaggtagtaggttgtatagttt 29




>RF00027;let-7;BAAF04050050.1/5012-4932 8090:Oryzias latipes
          (Japanese medaka)
          Length = 81

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 10 ggtgaggtagtaggttgtatagtttt 35
          ||||||||||||||||||||||||||
Sbjct: 5  ggtgaggtagtaggttgtatagtttt 30




>RF00027;let-7;BAAE01055973.1/4881-4962 8090:Oryzias latipes
          (Japanese medaka)
          Length = 82

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 10 ggtgaggtagtaggttgtatagtttt 35
          ||||||||||||||||||||||||||
Sbjct: 5  ggtgaggtagtaggttgtatagtttt 30




>RF00027;let-7;Z70203.2/12451-12379 6239:Caenorhabditis elegans
          Length = 73

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 10 ggtgaggtagtaggttgtatagttt 34
          |||||||||||||||||||||||||
Sbjct: 4  ggtgaggtagtaggttgtatagttt 28




>RF00027;let-7;AAGD02006482.1/22892-22821 31234:Caenorhabditis
          remanei
          Length = 72

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 10 ggtgaggtagtaggttgtatagttt 34
          |||||||||||||||||||||||||
Sbjct: 4  ggtgaggtagtaggttgtatagttt 28




>RF00027;let-7;AC084471.1/10992-10920 6238:Caenorhabditis briggsae
          Length = 73

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 10 ggtgaggtagtaggttgtatagttt 34
          |||||||||||||||||||||||||
Sbjct: 4  ggtgaggtagtaggttgtatagttt 28




>RF00027;let-7;AAFR03057393.1/5692-5610 13616:Monodelphis
          domestica (gray short-tailed opossum)
          Length = 83

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 10 ggtgaggtagtaggttgtatagttt 34
          |||||||||||||||||||||||||
Sbjct: 5  ggtgaggtagtaggttgtatagttt 29




>RF00027;let-7;AANN01118339.1/762-680 9365:Erinaceus europaeus
          (western European hedgehog)
          Length = 83

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 12 tgaggtagtaggttgtatagttttt 36
          |||||||||||||||||||||||||
Sbjct: 7  tgaggtagtaggttgtatagttttt 31




>RF00027;let-7;AAKN02054982.1/20495-20418 10141:Cavia porcellus
          (domestic guinea pig)
          Length = 78

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 10 ggtgaggtagtaggttgtatagttt 34
          |||||||||||||||||||||||||
Sbjct: 5  ggtgaggtagtaggttgtatagttt 29




>RF00027;let-7;ABRQ01826413.1/555-477 9813:Procavia capensis (cape
          rock hyrax)
          Length = 79

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 10 ggtgaggtagtaggttgtatagttt 34
          |||||||||||||||||||||||||
Sbjct: 5  ggtgaggtagtaggttgtatagttt 29




>RF00027;let-7;CAAB01000128.1/27883-27800 31033:Takifugu rubripes
          Length = 84

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 10 ggtgaggtagtaggttgtatagttt 34
          |||||||||||||||||||||||||
Sbjct: 5  ggtgaggtagtaggttgtatagttt 29




>RF00027;let-7;BAAE01151389.1/288-202 8090:Oryzias latipes
          (Japanese medaka)
          Length = 87

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 10 ggtgaggtagtaggttgtatagttt 34
          |||||||||||||||||||||||||
Sbjct: 5  ggtgaggtagtaggttgtatagttt 29




>RF00027;let-7;AAVX01007479.1/3161-3085 7868:Callorhinchus milii
          (ghost shark)
          Length = 77

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 10 ggtgaggtagtaggttgtatagttt 34
          |||||||||||||||||||||||||
Sbjct: 5  ggtgaggtagtaggttgtatagttt 29




>RF00027;let-7;AAVX01338774.1/620-544 7868:Callorhinchus milii
          (ghost shark)
          Length = 77

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 10 ggtgaggtagtaggttgtatagttt 34
          |||||||||||||||||||||||||
Sbjct: 5  ggtgaggtagtaggttgtatagttt 29




>RF00027;let-7;ABEP02005607.1/34812-34887 7739:Branchiostoma
          floridae (Florida lancelet)
          Length = 76

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 9  aggtgaggtagtaggttgtatagtt 33
          |||||||||||||||||||||||||
Sbjct: 4  aggtgaggtagtaggttgtatagtt 28




>RF00027;let-7;ABEP02005607.1/36672-36748 7739:Branchiostoma
          floridae (Florida lancelet)
          Length = 77

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 9  aggtgaggtagtaggttgtatagtt 33
          |||||||||||||||||||||||||
Sbjct: 4  aggtgaggtagtaggttgtatagtt 28




>RF00027;let-7;AANH01006181.1/186487-186407 69293:Gasterosteus
          aculeatus (three-spined stickleback)
          Length = 81

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 12 tgaggtagtaggttgtatagtttt 35
          ||||||||||||||||||||||||
Sbjct: 7  tgaggtagtaggttgtatagtttt 30




>RF00027;let-7;AAVX01108779.1/886-806 7868:Callorhinchus milii
          (ghost shark)
          Length = 81

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 12 tgaggtagtaggttgtatagtttt 35
          ||||||||||||||||||||||||
Sbjct: 7  tgaggtagtaggttgtatagtttt 30




>RF00027;let-7;AAVX01586337.1/294-214 7868:Callorhinchus milii
          (ghost shark)
          Length = 81

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 12 tgaggtagtaggttgtatagtttt 35
          ||||||||||||||||||||||||
Sbjct: 7  tgaggtagtaggttgtatagtttt 30




>RF00027;let-7;ABLA01021413.1/563-640 51029:Heterodera glycines
          Length = 78

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 7  caaggtgaggtagtaggttgtatagtt 33
          |||| ||||||||||||||||||||||
Sbjct: 2  caagctgaggtagtaggttgtatagtt 28




>RF00027;let-7;ABEG01002465.1/18268-18339 135651:Caenorhabditis
          brenneri
          Length = 72

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 12 tgaggtagtaggttgtatagttt 34
          |||||||||||||||||||||||
Sbjct: 6  tgaggtagtaggttgtatagttt 28




>RF00027;let-7;AAGU02067998.1/2847-2772 9785:Loxodonta africana
          (African savanna elephant)
          Length = 76

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 12 tgaggtagtaggttgtatagttt 34
          |||||||||||||||||||||||
Sbjct: 7  tgaggtagtaggttgtatagttt 29




>RF00027;let-7;BX284646.4/46451-46375 7955:Danio rerio (zebrafish)
          Length = 77

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 12 tgaggtagtaggttgtatagttt 34
          |||||||||||||||||||||||
Sbjct: 7  tgaggtagtaggttgtatagttt 29




>RF00027;let-7;BX663520.9/232739-232815 7955:Danio rerio
          (zebrafish)
          Length = 77

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 12 tgaggtagtaggttgtatagttt 34
          |||||||||||||||||||||||
Sbjct: 7  tgaggtagtaggttgtatagttt 29




>RF00027;let-7;AAZX01015868.1/1070-988 7425:Nasonia vitripennis
          (jewel wasp)
          Length = 83

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 10 ggtgaggtagtaggttgtatagt 32
          |||||||||||||||||||||||
Sbjct: 5  ggtgaggtagtaggttgtatagt 27




>RF00027;let-7;AADG05003176.1/75207-75290 7460:Apis mellifera
          (honey bee)
          Length = 84

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 10 ggtgaggtagtaggttgtatagt 32
          |||||||||||||||||||||||
Sbjct: 5  ggtgaggtagtaggttgtatagt 27




>RF00027;let-7;ABIR01000029.1/50721-50818 6334:Trichinella
          spiralis
          Length = 98

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 12 tgaggtagtaggttgtatagtt 33
          ||||||||||||||||||||||
Sbjct: 7  tgaggtagtaggttgtatagtt 28




>RF00027;let-7;AAQA01000457.1/25368-25290 6279:Brugia malayi
          Length = 79

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 12 tgaggtagtaggttgtatagtt 33
          ||||||||||||||||||||||
Sbjct: 7  tgaggtagtaggttgtatagtt 28




>RF00027;let-7;ABKE01000556.1/121-205 54126:Pristionchus pacificus
          Length = 85

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 12 tgaggtagtaggttgtatagtt 33
          ||||||||||||||||||||||
Sbjct: 6  tgaggtagtaggttgtatagtt 27




>RF00027;let-7;AAPN01191849.1/6200-6287 9258:Ornithorhynchus
          anatinus (platypus)
          Length = 88

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 11 gtgaggtagtaggttgtatagttttt 36
          |||||||||||| |||||||||||||
Sbjct: 6  gtgaggtagtagattgtatagttttt 31




>RF00027;let-7;AAWZ01027397.1/1152-1066 28377:Anolis carolinensis
          (green anole)
          Length = 87

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 6  gcaaggtgaggtagtaggttgt 27
          ||||||||||||||||||||||
Sbjct: 1  gcaaggtgaggtagtaggttgt 22




>RF00027;let-7;CAAB01004143.1/18701-18777 31033:Takifugu rubripes
          Length = 77

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 12 tgaggtagtaggttgtatagtt 33
          ||||||||||||||||||||||
Sbjct: 7  tgaggtagtaggttgtatagtt 28




>RF00027;let-7;AANH01000597.1/43752-43676 69293:Gasterosteus
          aculeatus (three-spined stickleback)
          Length = 77

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 12 tgaggtagtaggttgtatagtt 33
          ||||||||||||||||||||||
Sbjct: 7  tgaggtagtaggttgtatagtt 28




>RF00027;let-7;BAAE01285721.1/657-581 8090:Oryzias latipes
          (Japanese medaka)
          Length = 77

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 12 tgaggtagtaggttgtatagtt 33
          ||||||||||||||||||||||
Sbjct: 7  tgaggtagtaggttgtatagtt 28