miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EF567062.1/42666-42586 4565:Triticum aestivum
(bread wheat)
Length = 81
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 6 tactccctccgatccaaattaattgac 32
|||||||||||||||||||||||||||
Sbjct: 5 tactccctccgatccaaattaattgac 31
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 6 tactccctccgatccaaattaattga 31
||||||||||||||||||||||||||
Sbjct: 77 tactccctccgatccaaattaattga 52
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 106 gtcaattaatttgaatcggagggagtag 133
||||||||||||| ||||||||||||||
Sbjct: 31 gtcaattaatttggatcggagggagtag 4
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 107 tcaattaatttgaatcggagggagtag 133
|||||||||||| ||||||||||||||
Sbjct: 52 tcaattaatttggatcggagggagtag 78
>RF00906;MIR1122;AM932686.1/57613-57747 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 77 tagatacatctgtatctagacaaa 100
||||||||||||||||||||||||
Sbjct: 76 tagatacatctgtatctagacaaa 99
>RF00906;MIR1122;AF459639.1/191055-190921 4568:Triticum monococcum
Length = 135
Score = 44.1 bits (22), Expect = 5e-04
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 76 ctagatacatctgtatctagacaaagtggagtcaattaatttgaatcggagggagtag 133
||||||||||| ||||||||||||| || ||| ||||||| | ||||||||||||
Sbjct: 75 ctagatacatccgtatctagacaaatccaagacaagtaatttggaacggagggagtag 132
>RF00906;MIR1122;DQ123819.1/2832-2966 4571:Triticum turgidum
Length = 135
Score = 44.1 bits (22), Expect = 5e-04
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 84 atctgtatctagacaaagtggagtcaattaatttgaatcggagggagtag 133
||||||||||||||||| | || ||| ||||||| | ||||||||||||
Sbjct: 83 atctgtatctagacaaatcgaagacaagtaatttggaacggagggagtag 132
>RF00906;MIR1122;AY083682.1/10279-10145 4498:Avena sativa (oat)
Length = 135
Score = 44.1 bits (22), Expect = 5e-04
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 79 gatacatctgtatctagacaaagtggagtcaattaatttgaatcggagggagtagtat 136
||||||| |||||||||||||| | |||| |||| ||| | |||||||||||||||
Sbjct: 78 gatacatgtgtatctagacaaatctgcgtcatttaagttggaacggagggagtagtat 135
>RF00906;MIR1122;EF059989.1/352416-352302 29664:Brachypodium
sylvaticum
Length = 115
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 5 gtactccctccgatccaaattaattg 30
||||||||||||||||| ||||||||
Sbjct: 112 gtactccctccgatccatattaattg 87
