miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00650;mir-153;BAAF04013663.1/2456-2371 8090:Oryzias latipes
(Japanese medaka)
Length = 86
Score = 170 bits (86), Expect = 2e-42
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 7 aacatctcccagtgtcatttttgtggtttgcagctagtactctggctccagttgcatagt 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aacatctcccagtgtcatttttgtggtttgcagctagtactctggctccagttgcatagt 60
Query: 67 cacaaaaatgagcattggcaggtgtg 92
||||||||||||||||||||||||||
Sbjct: 61 cacaaaaatgagcattggcaggtgtg 86
>RF00650;mir-153;BX323042.7/121254-121169 7955:Danio rerio
(zebrafish)
Length = 86
Score = 109 bits (55), Expect = 7e-24
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 18 gtgtcatttttgtggtttgcagctagtactctggctccagttgcatagtcacaaaaatga 77
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 12 gtgtcatttttgtggtttgcagctagtagtctggttccagttgcatagtcacaaaaatga 71
Query: 78 gca 80
|||
Sbjct: 72 gca 74
>RF00650;mir-153;ABRQ01035369.1/2287-2202 9813:Procavia capensis
(cape rock hyrax)
Length = 86
Score = 99.6 bits (50), Expect = 6e-21
Identities = 71/78 (91%)
Strand = Plus / Plus
Query: 15 ccagtgtcatttttgtggtttgcagctagtactctggctccagttgcatagtcacaaaaa 74
||||||||||||||||| | ||||||||||| ||| ||||||||||||||||||||||
Sbjct: 9 ccagtgtcatttttgtgatctgcagctagtattctcactccagttgcatagtcacaaaag 68
Query: 75 tgagcattggcaggtgtg 92
||| ||||||||||||||
Sbjct: 69 tgatcattggcaggtgtg 86
>RF00650;mir-153;ABQF01010730.1/5361-5446 59729:Taeniopygia
guttata
Length = 86
Score = 95.6 bits (48), Expect = 1e-19
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 20 gtcatttttgtggtttgcagctagtactctggctccagttgcatagtcacaaaaatgagc 79
|||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||| |
Sbjct: 14 gtcatttttgtgatttgcagctagtaatctggctccagttgcatagtcacaaaagtgatc 73
Query: 80 attggcag 87
|||||||
Sbjct: 74 gttggcag 81
>RF00650;mir-153;AANH01011406.1/2584-2499 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 86
Score = 95.6 bits (48), Expect = 1e-19
Identities = 57/60 (95%)
Strand = Plus / Plus
Query: 18 gtgtcatttttgtggtttgcagctagtactctggctccagttgcatagtcacaaaaatga 77
|||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 12 gtgtcattcttgtggtttgcaactagtagtctggctccagttgcatagtcacaaaaatga 71
>RF00650;mir-153;AAWZ01013157.1/56717-56632 28377:Anolis
carolinensis (green anole)
Length = 86
Score = 77.8 bits (39), Expect = 2e-14
Identities = 65/71 (91%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 16 cagtgtcatttttgtggtttgcagctagtact-ctggctccagttgcatagtcacaaaaa 74
|||||||||||||||| ||||||||||||| | ||||| ||||||||||||||||||||
Sbjct: 10 cagtgtcatttttgtgatttgcagctagtaatcctggc-ccagttgcatagtcacaaaag 68
Query: 75 tgagcattggc 85
||| |||||||
Sbjct: 69 tgatcattggc 79
>RF00650;mir-153;BAAE01047906.1/23-109 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 61.9 bits (31), Expect = 1e-09
Identities = 62/71 (87%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 15 ccagtgtcatttttgtggt-ttgcagctagtactctggctccagttgcatagtcacaaaa 73
||||||||||||||||| | |||||||||||| | || ||||||||||||||||||||
Sbjct: 9 ccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaa 68
Query: 74 atgagcattgg 84
||| ||||||
Sbjct: 69 gtgatcattgg 79
