miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00682;mir-144;BAAF04033966.1/3629-3714 8090:Oryzias latipes
(Japanese medaka)
Length = 86
Score = 159 bits (80), Expect = 6e-39
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 gagccctggacaggatatcatcttatactgtaagtttaataaagagacactacagtatag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gagccctggacaggatatcatcttatactgtaagtttaataaagagacactacagtatag 62
Query: 61 atgatgtactatccagggtt 80
||||||||||||||||||||
Sbjct: 63 atgatgtactatccagggtt 82
>RF00682;mir-144;BC152081.1/387-472 7955:Danio rerio (zebrafish)
Length = 86
Score = 99.6 bits (50), Expect = 5e-21
Identities = 65/70 (92%)
Strand = Plus / Plus
Query: 9 gacaggatatcatcttatactgtaagtttaataaagagacactacagtatagatgatgta 68
|||||||||||||| ||||||||||||| | || |||||||||||||||||||||||||
Sbjct: 11 gacaggatatcatcgtatactgtaagttcattattgagacactacagtatagatgatgta 70
Query: 69 ctatccaggg 78
||||||||||
Sbjct: 71 ctatccaggg 80
>RF00682;mir-144;ABQO010853698.1/933-849 9315:Macropus eugenii
(tammar wallaby)
Length = 85
Score = 79.8 bits (40), Expect = 5e-15
Identities = 62/68 (91%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 3 gccctggacaggatatcatcttatactgtaagtttaataaagagacactacagtatagat 62
||||||| |||||||||||| |||||||||||||| || |||||||||||||||||||
Sbjct: 5 gccctggccaggatatcatcgtatactgtaagttt-gcaatgagacactacagtatagat 63
Query: 63 gatgtact 70
||||||||
Sbjct: 64 gatgtact 71
>RF00682;mir-144;AADN02025858.1/339-423 9031:Gallus gallus
(chicken)
Length = 85
Score = 71.9 bits (36), Expect = 1e-12
Identities = 61/68 (89%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 3 gccctggacaggatatcatcttatactgtaagtttaataaagagacactacagtatagat 62
||||||| | |||||||||| ||||||||||||| | || |||||||||||||||||||
Sbjct: 5 gccctgggctggatatcatcatatactgtaagttcactat-gagacactacagtatagat 63
Query: 63 gatgtact 70
||||||||
Sbjct: 64 gatgtact 71
>RF00682;mir-144;AAGU02141945.1/2203-2119 9785:Loxodonta africana
(African savanna elephant)
Length = 85
Score = 69.9 bits (35), Expect = 5e-12
Identities = 54/59 (91%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 13 ggatatcatcttatactgtaagtttaataaagagacactacagtatagatgatgtacta 71
|||||||||| |||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct: 15 ggatatcatcatatactgtaagtttg-tgatgagacactacagtatagatgatgtacta 72
>RF00682;mir-144;AAFR03044825.1/5551-5467 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 85
Score = 67.9 bits (34), Expect = 2e-11
Identities = 53/58 (91%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 13 ggatatcatcttatactgtaagtttaataaagagacactacagtatagatgatgtact 70
|||||||||| |||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 15 ggatatcatcgtatactgtaagtttgc-aatgagacactacagtatagatgatgtact 71
>RF00682;mir-144;ABQF01026376.1/1068-984 59729:Taeniopygia guttata
Length = 85
Score = 63.9 bits (32), Expect = 3e-10
Identities = 54/60 (90%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 11 caggatatcatcttatactgtaagtttaataaagagacactacagtatagatgatgtact 70
|||||||||||| ||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 13 caggatatcatcgtatactgtaagttggctat-gagacactacagtatagatgatgtact 71
>RF00682;mir-144;AAVX01587350.1/53-138 7868:Callorhinchus milii
(ghost shark)
Length = 86
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 45 agacactacagtatagatgatgtacta 71
|||||||||||||||||||||||||||
Sbjct: 47 agacactacagtatagatgatgtacta 73
